mRNA_F-serratus_M_contig120.1601.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig120.1601.1
Unique NamemRNA_F-serratus_M_contig120.1601.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig120.1601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig120contigF-serratus_M_contig120:809100..813312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size319
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig120.1601.1prot_F-serratus_M_contig120.1601.1Fucus serratus malepolypeptideF-serratus_M_contig120 809144..813238 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.592223-UTR-F-serratus_M_contig120:809099..8091431622929111.592223-UTR-F-serratus_M_contig120:809099..809143Fucus serratus maleUTRF-serratus_M_contig120 809100..809143 +
1690962710.151602-UTR-F-serratus_M_contig120:809099..8091431690962710.151602-UTR-F-serratus_M_contig120:809099..809143Fucus serratus maleUTRF-serratus_M_contig120 809100..809143 +
1622929111.6272292-UTR-F-serratus_M_contig120:813238..8133121622929111.6272292-UTR-F-serratus_M_contig120:813238..813312Fucus serratus maleUTRF-serratus_M_contig120 813239..813312 +
1690962710.1845503-UTR-F-serratus_M_contig120:813238..8133121690962710.1845503-UTR-F-serratus_M_contig120:813238..813312Fucus serratus maleUTRF-serratus_M_contig120 813239..813312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.604013-CDS-F-serratus_M_contig120:809143..8092351622929111.604013-CDS-F-serratus_M_contig120:809143..809235Fucus serratus maleCDSF-serratus_M_contig120 809144..809235 +
1690962710.1598117-CDS-F-serratus_M_contig120:809143..8092351690962710.1598117-CDS-F-serratus_M_contig120:809143..809235Fucus serratus maleCDSF-serratus_M_contig120 809144..809235 +
1622929111.617919-CDS-F-serratus_M_contig120:813129..8132381622929111.617919-CDS-F-serratus_M_contig120:813129..813238Fucus serratus maleCDSF-serratus_M_contig120 813130..813238 +
1690962710.176057-CDS-F-serratus_M_contig120:813129..8132381690962710.176057-CDS-F-serratus_M_contig120:813129..813238Fucus serratus maleCDSF-serratus_M_contig120 813130..813238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig120.1601.1

>prot_F-serratus_M_contig120.1601.1 ID=prot_F-serratus_M_contig120.1601.1|Name=mRNA_F-serratus_M_contig120.1601.1|organism=Fucus serratus male|type=polypeptide|length=67bp
MSDHGHFSSYEGDKERRTGKIREAFSGMMCQASDGWILARAPGSSAQGLH
HHGPRYFNYSHFCTTV*
back to top

mRNA from alignment at F-serratus_M_contig120:809100..813312+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig120.1601.1 ID=mRNA_F-serratus_M_contig120.1601.1|Name=mRNA_F-serratus_M_contig120.1601.1|organism=Fucus serratus male|type=mRNA|length=4213bp|location=Sequence derived from alignment at F-serratus_M_contig120:809100..813312+ (Fucus serratus male)
GCGACTTTCGGTTGGTCGTAGAGATTTCTGAGGGAAAATAGGTGATGTCT
GACCACGGTCACTTTTCTTCCTACGAGGGCGACAAGGAGCGGCGAACGGG
CAAGATTCGTGAGGCTTTTTCAGGGATGATGTGTCAGTTATATACTTAAA
TAGCTTATTCTGATCAGTGGGGAAGAATCATGGAATAACCATGATTTTCT
ATGGAATTAGTTTCTCTGTTCTACCCGTAATGTAGGGTCATATCAGTACG
TATGTTCATGCCCTACTAGGTCAGTCTTCACCAGTCTTCTGGTCTTCAGG
AAGTCTTTTATAAGTCTTCACCAGTATTCTGGTCTAATGGAAAGTACTTG
TTAAGTCTTTACCTGGTGTCTGTCGACACCGATTGTTTCTCCCAATACTA
TGCTATTAATGCTATAAGTTCTACATCGATCTTCTCCCAAGACTCTTTGA
CCTTCCCTACTGGTGAGGGTTTCACATTACACACATAGAGTGTTATCAAT
ATACTAGTGGTTCCTCAGCGCTGAGGACTACCCTAACATGCCATGGAAGG
AAAGCGAGGATGTCTTCGAGGGCCAGGTACCCTCCATAGAGCAACTGCTT
CAGGCAATGGAGGACAGATTGAAGGAATCGGCGAAGAAAGACAACGAGGA
GTTAAGAGATCGCCTCCAAGCGCTGGAGCTGAAGATGGAGCGATCCCTCG
CTGGAAATACGGGCTCACAACAGAAGATTTCTGATGAAACGAGAACTTTG
GAACAGCATGCAGCAAGCCTTGAGCATGGCGCTCGGCAGCCACGTCTTGC
CATGGAGGCAGACGGGCCAGCAAACATGAAGACTCGCGAGCGCACGGAGG
GCGCCGCAACAGCAGTTCAAGCGATGCGTGGAGATAGCTTTTCTGCAAGC
TGGGTTGAACCCGGCCCGAAGACCAATCCGACCAGTTTCGGCATGGAAGC
CGAACCTCCCGATCTTCCTTTCATTGAAGACGTCGTGGTTGAGTGCGGTG
ATGCCGCACCCAAGTCGTGTCTACCATCTTTGGAGATGCGCCCATCAACA
GCCGCTGGTGGCTTAGTTCCCACCGGCGAAACCTCCACAACAACGGAGAC
CAGCTTTAACCAGCCACCTCTTCGGTTTTGCGTGACTGAGGAAAAATATT
CAGGGGCGAGCTCGAAGGGGTCAGACAAAAGGACTTCGGCTCTACACGTC
TCGCTTGACAGCAGCGTCTTCTTCCAGGAGGGTACCCTGCCTGCTTCTCC
TTACTGCCGGAGGGTCGTCGAGACAAAATCCAGGCAGAATACGACGTTTG
ATCCAGGTGGTTCGCAAGGTCATCACCGCGCCCGCCTATTTTTGGTATCG
CGGCGCGCGTTGGTTTGTGGCGAGGTTGTACGAGATGGAGACAGCTGGGG
ACGGTTGCAGCGTTTTTTCGCAAATTCGCTGTGCCTCTTTGTCAAAGCCA
GCTTTATACTGGGCCGCTGAGGGCGGCCCGAGGCTACAAAAATCGGACGA
ATAGAGGTCACGCCGTCGAGGCGACTCGAGATGATTGGAAGTTAGGGGCG
AGCGGTTTTCGAGGAGGAGCATCATGGAGCTAGGAGCGTCTTGGAGCCAG
CAGCTCGGCGGCAACTACGCGAGGATGACTCATGTCTTCTGGACACCTCT
CCTACTTCGATTACAGGGTATGCTAAATTTAGTGTACACAATTACTACTG
TTTGTAGTACAATCATCGTTTTGTCCTCATTCCGTTTTTCATGTGTAGCT
TCACCCCTACCCTTGAAATGTGTTCTCTCGGGGAGGGTAATTCTAATAGG
ACGCGAAACTTACGGCAATGATTGTTCTCTCGGAGAGGCAGTTCTAATCG
GACGCGTAAAATACGGCAGTGATAGTTCGTGGAAGGTTGCGACGCTTTGA
TCGTTCGTAATAGTACCCGCAGGACCCTAGGCTGGACTGAAAATGTTAGC
CTCTCGCGAGCGAAGCTCACGTATTAAGAATCACGAATCGTCTAAATTTC
TCGTTGAGCCCGAACAGCAGATATCATTGTGATAAAGCTTGTAGTGGGAA
GGAATGATCCCGTGCAGTAGCCCATTATGAATGCTTGTATTGGGGAGGAA
AGCCGTTTGTACCGCCTGTACCCTTATGATCCCGTGCAGGAGCTATGCTT
GCATTGGGGAGGAACGCCGTTTGTATCACTTGTGTCCTTTTGATCGCGTG
CAGTAGCTTCCTTGCATTGTGGAGGAATGCTGTTTATCGACTGCGTGTGT
TCACGACGTGCGCTGTGAAACGTTTCTGTTTGCAGATTGCAAAACTCGTT
TGTACCGCCCGAGCACATCTAATCATGTCCGTTGAAAATCTTGCAGCACT
TGTTGAGAATTCAGTAGCGAGTATTTTTAACTGAAAAATATTTTTCCTCT
TGACAGCCGCTTGAAAAATTGATCAGCCTGTTGTCGATGACTCGCTCAAT
CAAGCTGACAGGACGTGGATAGCCCGTACAGAATTGGGTGGGCCGATTGA
AATGTCAACAGTAGTCACTCATGGCGAGTGTTTGGACCCTGAAAGGTAGT
TGCATCTGATGTTCATTCGCTAGATTGTGCCAAAGTCTATCTGTAATCGC
CGCTTGAGAATTCTAAGTCACTTGAGTAGCTCAACCGAAAGACTCGCGAG
GTTGCCTCAATGCTCATCGTTCGCTTGTCTCCAAAGGATGTCTGTTATCG
CTTGTTTTTAAGTAAGTGGTTAGGACTCGTGATAGCTGCTTGAAGTCGTT
GAATCGAACGTACCAACATCTAGGAATTATGCATTTAGACTACTGCAACT
TGCGATGTTCTTTGAGAGTCTTTCCTCGAAAGTAGGTTGGATTATAGAAT
TTCTCTTGCCTTCGCAGGTGTTTAGTCGGTGATGTCTGATTGATTTTCCC
TTTCTCTAGCATGTTAGTTTTTACTGACTCATAATATACTAGGGAGGATG
TCAGTTATATACTTAAATAGCTTATTCTGATCAGTGGGGAAGAATCATGG
AATAACCATGATTTTCTATGGAATTAGTTTCTCTGTTCTACCCGTTATGT
AGGGTCATATCAGTACGTATGTTCATGCCCCTACTAGGTCAGTCTTCACC
AGTCTTCTAGTCTTCAGGAAGTCTTTTATAAGTCTTCACCAGTATTCTGG
TCTAATGGAAAATACTTGTTAAGTCTTTACCTGGTGTCTGTCGACACCGA
TTGTTTCTCCCAATACTATGCTATTAATGCTATAAGTTCTACATCGATCT
TCTCCCAAGACTCTTTGACCTTCCCTACAGGCTGGGCTGGCCAAGACGCT
GTACACATGGCGGAATAGTTTTTCCACGCGGTTTTTACGAATTTTTACCA
GAAATTTTGACACGTTATTAAGACTGCTTTTGCGGAGAGGACCACCACTG
CACATTTTGGTTTTAGTTTTTTTTTCGTAAGTTATGGTATGATAGCCGGA
TATAAGTAGATGTGGGAATATTTGTTTCGCGACGAAATGATGGAAAAAAT
AAAAATAAATAAAAATATGCAGTGGTGGTCCTCTCCGCAAGAGCGGTCTA
AATCACGTGTCAAAATTTCAGGTGAAAAATCGTAAAACTGCGTGGCAAAT
CGCGATACCCCCACATTTCCTCAGTTCACTTGTGTTTTGTGTCGGAATCT
TTACGAGGCCGCAACTCTTGATAGAAAACGAGGCGAGCCTTGTAACTACC
CCCCACGCTATTGCGGTGCTCCTGGGTACGTGTACACCAAATTTCAGCTT
GATCCGTGACACTTTTTTTCATACTGATTTTAGTATAGGAAGTATCCTCC
ACTACGCCGCCAATTGGTCATTGTTTACCAAAATCAACTCGGATTCGAAA
ATTCCGGCGCCTGCGCTTCCTTTTGCCGTATAGAGCAGCCTCCAAATTTC
AAGCTTTAACTCGTAGAAACGGCAGAGCGAGACATGAACGAACAGAAGTC
AGTTTCTTGGCCAGCCCAGCTTGTACTGGCGAGGGTTTCACATTACACAC
ATAGAGTGTTATCAATATGATGATGCACAGGGCTTCGGACGGCTGGATAT
TGGCTCGCGCGCCGGGTTCATCAGCTCAAGGCCTCCACCATCATGGACCT
CGGTATTTCAATTATTCTCATTTCTGTACGACTGTGTAGCCTTGAGAAAC
TTGGACTTGTTGATCAAAACTGATTGGAGCGGTATTTGTCCGGTTTGTTG
CTGAGAACGCTGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig120:809100..813312+

>mRNA_F-serratus_M_contig120.1601.1 ID=mRNA_F-serratus_M_contig120.1601.1|Name=mRNA_F-serratus_M_contig120.1601.1|organism=Fucus serratus male|type=CDS|length=402bp|location=Sequence derived from alignment at F-serratus_M_contig120:809100..813312+ (Fucus serratus male)
ATGTCTGACCACGGTCACTTTTCTTCCTACGAGGGCGACAAGGAGCGGCG
AACGGGCAAGATTCGTGAGGCTTTTTCAGGGATGATGTGTCAATGTCTGA
CCACGGTCACTTTTCTTCCTACGAGGGCGACAAGGAGCGGCGAACGGGCA
AGATTCGTGAGGCTTTTTCAGGGATGATGTGTCAGGCTTCGGACGGCTGG
ATATTGGCTCGCGCGCCGGGTTCATCAGCTCAAGGCCTCCACCATCATGG
ACCTCGGTATTTCAATTATTCTCATTTCTGTACGACTGTGTAGGGCTTCG
GACGGCTGGATATTGGCTCGCGCGCCGGGTTCATCAGCTCAAGGCCTCCA
CCATCATGGACCTCGGTATTTCAATTATTCTCATTTCTGTACGACTGTGT
AG
back to top