mRNA_F-serratus_M_contig120.1600.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig120.1600.1
Unique NamemRNA_F-serratus_M_contig120.1600.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig120.1600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig120contigF-serratus_M_contig120:800740..801249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size512
Cds size444
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.9701524-UTR-F-serratus_M_contig120:800739..8008051622929111.9701524-UTR-F-serratus_M_contig120:800739..800805Fucus serratus maleUTRF-serratus_M_contig120 800740..800805 +
1690962710.2759442-UTR-F-serratus_M_contig120:800739..8008051690962710.2759442-UTR-F-serratus_M_contig120:800739..800805Fucus serratus maleUTRF-serratus_M_contig120 800740..800805 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.9850028-CDS-F-serratus_M_contig120:800805..8012491622929111.9850028-CDS-F-serratus_M_contig120:800805..801249Fucus serratus maleCDSF-serratus_M_contig120 800806..801249 +
1690962710.2846146-CDS-F-serratus_M_contig120:800805..8012491690962710.2846146-CDS-F-serratus_M_contig120:800805..801249Fucus serratus maleCDSF-serratus_M_contig120 800806..801249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig120.1600.1prot_F-serratus_M_contig120.1600.1Fucus serratus malepolypeptideF-serratus_M_contig120 800806..801249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig120.1600.1

>prot_F-serratus_M_contig120.1600.1 ID=prot_F-serratus_M_contig120.1600.1|Name=mRNA_F-serratus_M_contig120.1600.1|organism=Fucus serratus male|type=polypeptide|length=148bp
MNFRGLGLHVTHQSLHSLIVVYTRPKQISNIISPECDSSPRLAAVLTESV
EPETPSALSPAISTGLPEANSISPECDPSPRLAAVVTGSEEPETPSASSP
EEVKMETDGFQYSKYVSLEDQYIWIRARKQYILRQLDVRVDDEEEPIA
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mRNA from alignment at F-serratus_M_contig120:800740..801249+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig120.1600.1 ID=mRNA_F-serratus_M_contig120.1600.1|Name=mRNA_F-serratus_M_contig120.1600.1|organism=Fucus serratus male|type=mRNA|length=510bp|location=Sequence derived from alignment at F-serratus_M_contig120:800740..801249+ (Fucus serratus male)
TTAACGAGAGGCAAAGGAGAGTCAATAAGTTCAGCTATCCTGTGTCGCTC
GAGATGATTCTTTTGAATGAATTTCCGCGGCCTAGGGCTTCATGTTACCC
ACCAGTCTCTTCACAGCCTGATAGTGGTGTACACCAGGCCGAAGCAAATA
TCAAATATCATATCGCCAGAGTGCGATTCATCGCCGCGACTCGCCGCGGT
CCTTACGGAGTCAGTCGAACCCGAAACACCGTCAGCCTTGTCGCCCGCGA
TCAGTACGGGTTTACCCGAAGCAAACAGCATATCGCCAGAGTGCGATCCA
TCGCCGCGACTCGCCGCGGTCGTTACGGGGTCAGAGGAACCCGAGACACC
GTCAGCCTCGTCGCCCGAAGAAGTAAAAATGGAGACTGATGGTTTTCAGT
ATTCTAAGTACGTAAGTCTTGAGGACCAGTATATTTGGATAAGAGCACGA
AAGCAGTACATTTTGCGTCAACTAGACGTCAGGGTGGACGACGAGGAAGA
ACCTATCGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig120:800740..801249+

>mRNA_F-serratus_M_contig120.1600.1 ID=mRNA_F-serratus_M_contig120.1600.1|Name=mRNA_F-serratus_M_contig120.1600.1|organism=Fucus serratus male|type=CDS|length=888bp|location=Sequence derived from alignment at F-serratus_M_contig120:800740..801249+ (Fucus serratus male)
ATGAATTTCCGCGGCCTAGGGCTTCATGTTACCCACCAGTCTCTTCACAG
CCTGATAGTGGTGTACACCAGGCCGAAGCAAATATCAAATATCATATCGC
CAGAGTGCGATTCATCGCCGCGACTCGCCGCGGTCCTTACGGAGTCAGTC
GAACCCGAAACACCGTCAGCCTTGTCGCCCGCGATCAGTACGGGTTTACC
CGAAGCAAACAGCATATCGCCAGAGTGCGATCCATCGCCGCGACTCGCCG
CGGTCGTTACGGGGTCAGAGGAACCCGAGACACCGTCAGCCTCGTCGCCC
GAAGAAGTAAAAATGGAGACTGATGGTTTTCAGTATTCTAAGTACGTAAG
TCTTGAGGACCAGTATATTTGGATAAGAGCACGAAAGCAGTACATTTTGC
GTCAACTAGACGTCAGGGTGGACGACGAGGAAGAACCTATCGCCATGAAT
TTCCGCGGCCTAGGGCTTCATGTTACCCACCAGTCTCTTCACAGCCTGAT
AGTGGTGTACACCAGGCCGAAGCAAATATCAAATATCATATCGCCAGAGT
GCGATTCATCGCCGCGACTCGCCGCGGTCCTTACGGAGTCAGTCGAACCC
GAAACACCGTCAGCCTTGTCGCCCGCGATCAGTACGGGTTTACCCGAAGC
AAACAGCATATCGCCAGAGTGCGATCCATCGCCGCGACTCGCCGCGGTCG
TTACGGGGTCAGAGGAACCCGAGACACCGTCAGCCTCGTCGCCCGAAGAA
GTAAAAATGGAGACTGATGGTTTTCAGTATTCTAAGTACGTAAGTCTTGA
GGACCAGTATATTTGGATAAGAGCACGAAAGCAGTACATTTTGCGTCAAC
TAGACGTCAGGGTGGACGACGAGGAAGAACCTATCGCC
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