mRNA_F-serratus_M_contig120.1587.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig120.1587.1
Unique NamemRNA_F-serratus_M_contig120.1587.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig120.1587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig120contigF-serratus_M_contig120:309849..310660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size812
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig120.1587.1prot_F-serratus_M_contig120.1587.1Fucus serratus malepolypeptideF-serratus_M_contig120 309956..310573 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.6893494-UTR-F-serratus_M_contig120:309848..3099551622929111.6893494-UTR-F-serratus_M_contig120:309848..309955Fucus serratus maleUTRF-serratus_M_contig120 309849..309955 +
1690962710.201353-UTR-F-serratus_M_contig120:309848..3099551690962710.201353-UTR-F-serratus_M_contig120:309848..309955Fucus serratus maleUTRF-serratus_M_contig120 309849..309955 +
1622929111.7138631-UTR-F-serratus_M_contig120:310573..3106601622929111.7138631-UTR-F-serratus_M_contig120:310573..310660Fucus serratus maleUTRF-serratus_M_contig120 310574..310660 +
1690962710.2194421-UTR-F-serratus_M_contig120:310573..3106601690962710.2194421-UTR-F-serratus_M_contig120:310573..310660Fucus serratus maleUTRF-serratus_M_contig120 310574..310660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.701706-CDS-F-serratus_M_contig120:309955..3105731622929111.701706-CDS-F-serratus_M_contig120:309955..310573Fucus serratus maleCDSF-serratus_M_contig120 309956..310573 +
1690962710.2117136-CDS-F-serratus_M_contig120:309955..3105731690962710.2117136-CDS-F-serratus_M_contig120:309955..310573Fucus serratus maleCDSF-serratus_M_contig120 309956..310573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig120.1587.1

>prot_F-serratus_M_contig120.1587.1 ID=prot_F-serratus_M_contig120.1587.1|Name=mRNA_F-serratus_M_contig120.1587.1|organism=Fucus serratus male|type=polypeptide|length=206bp
MVDHSHLRAASDGEKLEDGWKRQEGRSKRAPAGKHFEEHGHRSKRSTGDS
RRPTKHKGTSNSEVQTPDAVKARLGLLCSSITRGKESPQVGTTFLGHGRR
KEVPAESRSDGTARGNASNVLIAGKTTLSRRLVRNSRMLSDSLLRDIART
GDISASIEPLGARGGKHTCMRGLEGEIETEPSLRESDDSSTIVWYRTIVA
CLMTE*
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mRNA from alignment at F-serratus_M_contig120:309849..310660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig120.1587.1 ID=mRNA_F-serratus_M_contig120.1587.1|Name=mRNA_F-serratus_M_contig120.1587.1|organism=Fucus serratus male|type=mRNA|length=812bp|location=Sequence derived from alignment at F-serratus_M_contig120:309849..310660+ (Fucus serratus male)
AAGAGCTTAAGCGTTCTTCGCCGGAGAAGTGTCCAAGAGAAAGTTTGGGG
GAGACAAGTCAACGATCGAGAGATAAAGCAAAAACATTTGAGGCTCAGTC
AAGAGGTATGGTCGACCATAGCCATCTGCGAGCGGCGTCCGACGGGGAGA
AACTCGAGGATGGATGGAAAAGACAAGAAGGGCGCAGCAAGCGGGCGCCT
GCAGGGAAACACTTCGAGGAACACGGTCACCGCTCGAAGCGATCTACCGG
GGACAGTCGTCGCCCCACTAAGCACAAGGGAACATCCAACAGCGAAGTGC
AGACGCCGGATGCCGTCAAAGCACGCTTAGGTCTTCTGTGCAGTTCGATA
ACCCGGGGAAAAGAATCGCCTCAAGTCGGCACAACGTTTCTAGGTCACGG
GAGGAGGAAGGAAGTACCCGCGGAATCACGCTCGGATGGCACGGCGCGCG
GAAATGCCTCAAACGTACTTATTGCGGGAAAGACAACCCTTTCGAGGAGA
CTCGTCCGAAACAGCCGTATGCTATCGGACTCGCTTCTGAGAGACATAGC
TAGAACGGGAGATATATCTGCGTCTATTGAGCCTCTCGGCGCGAGGGGGG
GAAAACACACATGCATGCGCGGTCTTGAAGGGGAGATCGAAACGGAACCT
TCACTTAGGGAGAGCGACGACTCTAGCACCATCGTTTGGTACAGAACAAT
CGTGGCGTGTTTGATGACTGAATAGTGTTTGTCTTATCGACATCTTATTT
CGATTTTCGAAGGTCTCTTTATGGAAAGTCTGTGGGAATTCGTTGCAAGC
TCAAATACAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig120:309849..310660+

>mRNA_F-serratus_M_contig120.1587.1 ID=mRNA_F-serratus_M_contig120.1587.1|Name=mRNA_F-serratus_M_contig120.1587.1|organism=Fucus serratus male|type=CDS|length=1236bp|location=Sequence derived from alignment at F-serratus_M_contig120:309849..310660+ (Fucus serratus male)
ATGGTCGACCATAGCCATCTGCGAGCGGCGTCCGACGGGGAGAAACTCGA
GGATGGATGGAAAAGACAAGAAGGGCGCAGCAAGCGGGCGCCTGCAGGGA
AACACTTCGAGGAACACGGTCACCGCTCGAAGCGATCTACCGGGGACAGT
CGTCGCCCCACTAAGCACAAGGGAACATCCAACAGCGAAGTGCAGACGCC
GGATGCCGTCAAAGCACGCTTAGGTCTTCTGTGCAGTTCGATAACCCGGG
GAAAAGAATCGCCTCAAGTCGGCACAACGTTTCTAGGTCACGGGAGGAGG
AAGGAAGTACCCGCGGAATCACGCTCGGATGGCACGGCGCGCGGAAATGC
CTCAAACGTACTTATTGCGGGAAAGACAACCCTTTCGAGGAGACTCGTCC
GAAACAGCCGTATGCTATCGGACTCGCTTCTGAGAGACATAGCTAGAACG
GGAGATATATCTGCGTCTATTGAGCCTCTCGGCGCGAGGGGGGGAAAACA
CACATGCATGCGCGGTCTTGAAGGGGAGATCGAAACGGAACCTTCACTTA
GGGAGAGCGACGACTCTAGCACCATCGTTTGGTACAGAACAATCGTGGCG
TGTTTGATGACTGAATAGATGGTCGACCATAGCCATCTGCGAGCGGCGTC
CGACGGGGAGAAACTCGAGGATGGATGGAAAAGACAAGAAGGGCGCAGCA
AGCGGGCGCCTGCAGGGAAACACTTCGAGGAACACGGTCACCGCTCGAAG
CGATCTACCGGGGACAGTCGTCGCCCCACTAAGCACAAGGGAACATCCAA
CAGCGAAGTGCAGACGCCGGATGCCGTCAAAGCACGCTTAGGTCTTCTGT
GCAGTTCGATAACCCGGGGAAAAGAATCGCCTCAAGTCGGCACAACGTTT
CTAGGTCACGGGAGGAGGAAGGAAGTACCCGCGGAATCACGCTCGGATGG
CACGGCGCGCGGAAATGCCTCAAACGTACTTATTGCGGGAAAGACAACCC
TTTCGAGGAGACTCGTCCGAAACAGCCGTATGCTATCGGACTCGCTTCTG
AGAGACATAGCTAGAACGGGAGATATATCTGCGTCTATTGAGCCTCTCGG
CGCGAGGGGGGGAAAACACACATGCATGCGCGGTCTTGAAGGGGAGATCG
AAACGGAACCTTCACTTAGGGAGAGCGACGACTCTAGCACCATCGTTTGG
TACAGAACAATCGTGGCGTGTTTGATGACTGAATAG
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