mRNA_F-serratus_M_contig120.1579.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig120.1579.1
Unique NamemRNA_F-serratus_M_contig120.1579.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig120.1579.1 vs. uniprot
Match: D7G5S2_ECTSI (Transmembrane protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S2_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 4.040e-85
Identity = 143/228 (62.72%), Postives = 166/228 (72.81%), Query Frame = 1 
Query:  538 GFHFFWACCTNLLVAGFIRLLVGAPRPFMFDSRLRPLTDRYDTSHGFPSLETHMATVVVGWWVESIDTRG---------GVQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSLITGAVGLFFGWRLSVHLDSFHLLFRHHVRGTIVVLIIVLGFVSYHVENNTSELMGIKKQEYVRVLANIINESGQTQNATFGASERDSQDSLRGKV----SDAPTDARVTSSGS 1182
            GFHFFWACC N+  A  +RL++ APRPFM+D RLRPLTDRY+TSHG PSLETHMATVV GWW ES  + G         GVQ + RLLA+ YI FVGFTRVYACSRFVHQV LS++TGAVGL +GWRLS HLD   L  RHHVRGT+VV+II LG V+Y VENN S+LMGI+K EY+RVL+NI+ ES Q Q+AT G +E  S+D   G        AP D R  SS S
Sbjct:   19 GFHFFWACCINMAGAALLRLVLSAPRPFMYDQRLRPLTDRYETSHGLPSLETHMATVVAGWWAESGGSNGSSTDSGGDDGVQPLVRLLALGYIAFVGFTRVYACSRFVHQVALSIVTGAVGLAWGWRLSTHLDGLALTMRHHVRGTVVVVIIALGMVAYQVENNDSQLMGIRKHEYLRVLSNIVKESQQAQSATVGGAE--SEDGAEGGEWLLHDGAPWDGRAVSSKS 244
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BLAST of mRNA_F-serratus_M_contig120.1579.1 vs. uniprot
Match: A0A7S3XSM3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSM3_HETAK)

HSP 1 Score: 154 bits (389), Expect = 2.590e-39
Identity = 93/213 (43.66%), Postives = 120/213 (56.34%), Query Frame = 1 
Query:  439 WMQRNLARVVSRQPLRDISVVTWFAFSMGCHRFGFHFFWACCTNLLVAGFIRLLVGAPRPFMFDSRLRPL--TDRYDTSHGFPSLETHMATVVVGWWVESIDTRGGVQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSLITGAVGLFFGWRLSVHLDSFHLLFRHHVRGTIVVLIIVLGFVSYHVENNTSELMGIKKQEYVRVLANIINES 1071
            W Q  + +VVS  P  DIS++TWF+F +    FGF F W C  NL  A  +R  +G  RPF FD RLR    TD+Y  S+GFPSLETHMA VV G     I    G   +  L   I I FVGFTRVYAC+RF+HQV LS  TGA+GL   +     L ++ + +R H     + L +VL  V    E+N    +G+ ++EY RVL  I+  S
Sbjct:   41 WFQPYIDKVVSSNPFADISMLTWFSFIIAVTEFGFPFLWICTGNLFFAQVLRWTLGCRRPFEFDGRLRKAVKTDKYIWSYGFPSLETHMAVVVYG----GIAFYSGKWQLLWLFTPI-IAFVGFTRVYACARFIHQVALSGGTGALGLALAFWAVRSLRAWGVRYRCHYYWAFLALTVVLVVVGLWAESNECSWLGVPREEYRRVLRGILETS 248
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BLAST of mRNA_F-serratus_M_contig120.1579.1 vs. uniprot
Match: F0Y7I7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7I7_AURAN)

HSP 1 Score: 108 bits (269), Expect = 2.100e-22
Identity = 77/225 (34.22%), Postives = 109/225 (48.44%), Query Frame = 1 
Query:  454 LARVVSRQPLRDISVVTWFAFSMGCHRFGFHFFWACCTNLLVAGFIRLLVGAPRPFMFDSRLRPLTDRYDTSHGFPSLETHMATVVVGWWVES--IDTRGGVQSIARLL----AVIYICFVGFTRVYACSRFVHQVLLSLITGAVGLFFG----------WRLSVHLDSFHLLFRH--HVRGTIVVLIIVLGFVSYHVENNTSELMGIKKQEYVRVLANIINESG 1074
            L  V+S+ P RD++ +TW AF  G    G+HF   C  NL      R ++ A RP  +D  L+ L DR   ++G P L THMA VV     E    D RG    I   L    A+  +  V  +R+ A SRFV+QV LSL TGA+G+             WR     D +H L  +  HV    ++   V  +V+++ E+N+S    I   E+ RV+  I N+ G
Sbjct:   45 LRHVISQNPTRDVTALTWVAFVAGIFYSGYHFTVNCAMNLGFVLLTRAVIAARRPVEYDVHLKQLADRTRGAYGSPDLATHMAVVVFLQLSEKGVDDARGTDYEIFEGLIWGGALALVALVALSRLVAGSRFVYQVALSLATGALGITAARTHVTSKIDPWR-----DEWHNLANNAGHVVWLTIIWSCVAAYVAHYAEDNSSHFFSIPNDEFTRVMKGIYNQPG 264
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BLAST of mRNA_F-serratus_M_contig120.1579.1 vs. uniprot
Match: A0A485LLT1_9STRA (Aste57867_22364 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLT1_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.160e-20
Identity = 65/212 (30.66%), Postives = 109/212 (51.42%), Query Frame = 1 
Query:  436 PWMQRNLARVVSRQPLRDISVVTWFAFSMGCHRFGFHFFWACCTNLLVAGFIRLLVGAPRPFMFDSRLRPLTDRYDTSHGFPSLETHMATVVVG--WWVESIDTRGGVQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSLITGAVGLFFGWRLSVHLDSFHLLFRHHVRGTIVVLIIVLGFVSYHVENNTSELMGIKKQEYVRVLANIIN 1065
            P + + +  VVSR   +DIS++ W  F       GF + W C  NLLVA  ++  + A RP  +D  L         + GFPS+++HMA VVV   ++++S+        +  L+ +  +  + F+RV+  +RF  Q++ S  TG +GL  G    V +  + +   +H    + V++  L  ++ +VE N S   G+ K E+ RVL +IIN
Sbjct:   48 PGVTQAIHSVVSRYRTQDISLLLWLIFFFLVPDLGFPYVWTCVGNLLVALVLQYAIDAKRPIDYDPDLHVYMCTDPDTRGFPSVDSHMAIVVVAPAFFLDSVSL------LTCLMLLACVGLIAFSRVFVAARFPSQIVASWATGVLGLCVGDFCHVTMQLYRIPAYYHRVALVCVIVGTLFCIAQYVERNESRSFGLPKAEFTRVLESIIN 253
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BLAST of mRNA_F-serratus_M_contig120.1579.1 vs. uniprot
Match: A0A7S3GX49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GX49_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 9.010e-20
Identity = 68/184 (36.96%), Postives = 106/184 (57.61%), Query Frame = 1 
Query:  592 RLLVGAPRPFMFDSRLRPLTDRYDTSHGFPSLETHMATVVVGWWVESIDTRGGVQSIARL-LAVIYICFVGFTRVYACSRFVHQVLLSLITGAVGLFFGW----RLSVHLDSFHLLFRHHVRGTIVVLIIVLGFV---SYHVENNTSELMGIKKQEYVRVLANIINESGQTQNATFGASERDSQ 1119
            R L+ A RP  +D RL+PLTD    S+GFPSLE++M+ V++G    S       ++I  L L  I +  +GF+RVY+ SRF HQ++ S + G VGL        R+++H  S      HH  G + V++IVLG +   + ++ENN S L  I ++E++RV++NII+      ++T   S  D +
Sbjct:    3 RCLIEAKRPVEYDIRLQPLTDTRADSYGFPSLESYMSVVIMGHLFLSF------KNIWLLPLGAIVVFVIGFSRVYSRSRFPHQIVGSWLAGFVGLLVSMHCCERMNIHKMS------HHQHG-VCVMVIVLGVLCNFALNLENNESRLAQIPREEFIRVMSNIISGGDNNISSTVDVSTTDEE 173
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BLAST of mRNA_F-serratus_M_contig120.1579.1 vs. uniprot
Match: A0A1V9ZKU1_9STRA (TFIIS N-terminal domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKU1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.990e-16
Identity = 81/266 (30.45%), Postives = 123/266 (46.24%), Query Frame = 1 
Query:  463 VVSRQPLRDISVVTWFAFSMGCHRFGFHFFWACCTNLLVAGFIRLLVGAPRPFMFDSRLR-PLTDRYDTSHGFPSLETHMATVVVGWWVESIDTRGGVQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSLITGAVGLFFGWRLSVHLDSFHLLFRHHVRGTIVVLIIV--LGFVSYHVENNTSELMGIKKQEYVRVLANIINESGQTQNATFGASERDSQDSLRGKVSDAPTDARVTSSGSSRRRFLEERKDSFHFLHKTIERR 1251
            + SR    D+SVV WF F       GF + W+C  N +V   ++ ++ A RP  +D+RL  P     DT  GFPSL++HMA V+VG           +  +  ++    I  VG +RV    RF  QV+ S +TGA+G+         +  F L     V   +++L+IV  L  V+  VE +   ++G+ K E+ RVL +I++  G                      SD  T A   +S S+ +R      DSF+FL K +  R
Sbjct:  474 LASRYRTHDVSVVLWFIFLFMTPELGFPYVWSCVGNFVVVLVMQNVIQARRPIDYDARLYLPACTDPDTM-GFPSLDSHMAIVIVG----PALVLPSISGVTSMVFAAVILLVGASRVVVGMRFPSQVVASWVTGAIGVGVASFCHAAVRPFQL--PAFVNRVVLLLVIVSALFCVAAWVERSECRVVGVPKAEFTRVLGSILHGDG----------------------SDGSTGAPKPTSASAHKR------DSFYFLMKALRSR 704
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BLAST of mRNA_F-serratus_M_contig120.1579.1 vs. uniprot
Match: A0A067CHI3_SAPPC (acidPPc domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CHI3_SAPPC)

HSP 1 Score: 87.4 bits (215), Expect = 1.910e-15
Identity = 66/208 (31.73%), Postives = 106/208 (50.96%), Query Frame = 1 
Query:  463 VVSRQPLRDISVVTWFAFSMGCHRFGFHFFWACCTNLLVAGFIRLLVGAPRPFMFDSRLR-PLTDRYDTSHGFPSLETHMATVVVG--WWVESIDTRGGVQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSLITGAVGLFFGWRLSVHLDSFHLLFRHHVRGTIVVLIIVLGF-VSYHVENNTSELMGIKKQEYVRVLANIINESG 1074
            + SR   +DISVV WF F       GF + W    N L    ++ ++ A RP  +DSRL  P     DT  GFPSL++HMA V+VG  ++V S+        +   +    +  +G+TRV+   RF  QV+ S  TG VG+  G      L ++ L   ++ R  +++L+    F ++  VE     ++G+ + E+ RVL+ I++  G
Sbjct:   37 LASRYRTQDISVVLWFIFVFMTPELGFRYVWNVVGNFLAVVALQYVLQAKRPIDYDSRLYLPECTDPDTM-GFPSLDSHMAVVIVGPTYFVSSVSP------VTCAIFTACVVLIGWTRVWIGMRFPSQVVASWATGIVGVIIGNLCHYTLVAYELP-AYYNRVCLLLLVASAAFCLATWVERAECRVVGVPRAEFTRVLSRILHGDG 236
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BLAST of mRNA_F-serratus_M_contig120.1579.1 vs. uniprot
Match: T0RZG9_SAPDV (acidPPc domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RZG9_SAPDV)

HSP 1 Score: 86.3 bits (212), Expect = 5.030e-15
Identity = 68/219 (31.05%), Postives = 110/219 (50.23%), Query Frame = 1 
Query:  430 WPPWMQRNLARVVSRQPLRDISVVTWFAFSMGCHRFGFHFFWACCTNLLVAGFIRLLVGAPRPFMFDSRLR-PLTDRYDTSHGFPSLETHMATVVVG--WWVESIDTRGGVQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSLITGAVGLFFGWRLSVHLDSFHLLFRHHVRGTIVVLIIVLGF-VSYHVENNTSELMGIKKQEYVRVLANIINESG 1074
            WP  +   L  + SR   +DIS+V WF F       GF + W    NL     ++ +V A RP  +D+RL  P     DT  GFPSL++HMA V+VG  ++V S+        +   +    +  +G+TRV+   RF  QV+ S  TG VG+  G      L ++ +   ++ R  +++LI    F ++  VE     ++G+ + E+ RVL+ I++  G
Sbjct:   28 WPS-LSVVLHSLTSRYRTQDISLVLWFIFVAMTPELGFRYVWNVVGNLFAVFALQYVVQAKRPIDYDARLHLPECTDPDTM-GFPSLDSHMAIVIVGPTYFVPSVSP------VTSAIFTACVLLIGWTRVWIGMRFPSQVVASWFTGIVGVIVGNLCHYTLLAYEVP-AYYNRVCLLLLIASAAFCLATWVERAECRVVGVPRAEFTRVLSRILHGDG 237
[Close]
BLAST of mRNA_F-serratus_M_contig120.1579.1 vs. uniprot
Match: W4GKK8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKK8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.680e-12
Identity = 69/212 (32.55%), Postives = 101/212 (47.64%), Query Frame = 1 
Query:  463 VVSRQPLRDISVVTWFAFSMGCHRFGFHFFWACCTNLLVAGFIRLLVGAPRPFMFDSRL--RPLTDRYDTSHGFPSLETHMATVVVGWWVESIDTRGGVQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSLITGAVGLFFGWRLSVHLDSFHLLFRHHVRGT-------IVVLIIVLGFV---SYHVENNTSELMGIKKQEYVRVLANII 1062
            +VSR   +DIS++ W  F       G  +F+ C  NL+VA  ++  + A RP  +D  L     TD  DT+ GFPS+++HMA VV+        T   V ++   L  +    + FTRV+   RF  Q++ S  TG VGL       V  +  H+   HH           IVV+  V+G V   +  VE + S   GI + E+ RVL  I+
Sbjct:   50 LVSRYRTQDISILLWLFFFYLVTDLGIPYFYTCVGNLVVAAALQHSINAKRPIDYDDSLYIHACTDP-DTT-GFPSIDSHMAIVVI----TPALTSNSVSALTFSLMAVSGFAIAFTRVFVGVRFPSQIVGSWGTGLVGL-------VVANFIHVSVLHHAAAAVPPSFHRIVVVCFVVGAVCCVASWVEASDSRNFGIPRHEFTRVLKAIV 248
[Close]
BLAST of mRNA_F-serratus_M_contig120.1579.1 vs. uniprot
Match: W4GMT4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMT4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.650e-9
Identity = 53/165 (32.12%), Postives = 79/165 (47.88%), Query Frame = 1 
Query:  463 VVSRQPLRDISVVTWFAFSMGCHRFGFHFFWACCTNLLVAGFIRLLVGAPRPFMFDSRL--RPLTDRYDTSHGFPSLETHMATVVVGWWVESIDTRGGVQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSLITGAVGLFFGWRLSVHLDSFHLLFRHHVRGTI 951
            +VSR   +DIS++ W  F       G  +F+ C  NL+VA  ++  + A RP  +D  L     TD  DT+ GFPS+++HMA VV+        T   V ++   L  +    + FTRV+   RF  Q++ S  TG VGL       V  +  H+   HH    +
Sbjct:   50 LVSRYRTQDISILLWLFFFYLVTDLGIPYFYTCVGNLVVAAALQHSINAKRPIDYDDSLYIHACTDP-DTT-GFPSIDSHMAIVVI----TPALTSNSVSALTFSLMAVSGFAIAFTRVFVGVRFPSQIVGSWGTGLVGL-------VVANFIHVSVLHHAAAAV 201
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig120.1579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G5S2_ECTSI4.040e-8562.72Transmembrane protein, putative n=1 Tax=Ectocarpus... [more]
A0A7S3XSM3_HETAK2.590e-3943.66Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0Y7I7_AURAN2.100e-2234.22Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A485LLT1_9STRA2.160e-2030.66Aste57867_22364 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3GX49_9STRA9.010e-2036.96Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A1V9ZKU1_9STRA1.990e-1630.45TFIIS N-terminal domain-containing protein n=1 Tax... [more]
A0A067CHI3_SAPPC1.910e-1531.73acidPPc domain-containing protein n=1 Tax=Saproleg... [more]
T0RZG9_SAPDV5.030e-1531.05acidPPc domain-containing protein n=1 Tax=Saproleg... [more]
W4GKK8_9STRA1.680e-1232.55Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4GMT4_9STRA4.650e-932.12Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig120contigF-serratus_M_contig120:87335..91043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.6
Seed ortholog evalue1.6e-71
Seed eggNOG ortholog2880.D7G5S2
Hectar predicted targeting categoryother localisation
EggNOG OGs2C31B@1,2S2SV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1690
Cds size1005
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929112.2517805-UTR-F-serratus_M_contig120:87334..875781622929112.2517805-UTR-F-serratus_M_contig120:87334..87578Fucus serratus maleUTRF-serratus_M_contig120 87335..87578 -
1690962710.4019895-UTR-F-serratus_M_contig120:87334..875781690962710.4019895-UTR-F-serratus_M_contig120:87334..87578Fucus serratus maleUTRF-serratus_M_contig120 87335..87578 -
1622929112.3749084-UTR-F-serratus_M_contig120:90602..910431622929112.3749084-UTR-F-serratus_M_contig120:90602..91043Fucus serratus maleUTRF-serratus_M_contig120 90603..91043 -
1690962710.4692895-UTR-F-serratus_M_contig120:90602..910431690962710.4692895-UTR-F-serratus_M_contig120:90602..91043Fucus serratus maleUTRF-serratus_M_contig120 90603..91043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929112.2681706-CDS-F-serratus_M_contig120:87578..877061622929112.2681706-CDS-F-serratus_M_contig120:87578..87706Fucus serratus maleCDSF-serratus_M_contig120 87579..87706 -
1690962710.414774-CDS-F-serratus_M_contig120:87578..877061690962710.414774-CDS-F-serratus_M_contig120:87578..87706Fucus serratus maleCDSF-serratus_M_contig120 87579..87706 -
1622929112.2817972-CDS-F-serratus_M_contig120:88147..882811622929112.2817972-CDS-F-serratus_M_contig120:88147..88281Fucus serratus maleCDSF-serratus_M_contig120 88148..88281 -
1690962710.4226165-CDS-F-serratus_M_contig120:88147..882811690962710.4226165-CDS-F-serratus_M_contig120:88147..88281Fucus serratus maleCDSF-serratus_M_contig120 88148..88281 -
1622929112.2966855-CDS-F-serratus_M_contig120:88813..889141622929112.2966855-CDS-F-serratus_M_contig120:88813..88914Fucus serratus maleCDSF-serratus_M_contig120 88814..88914 -
1690962710.4306345-CDS-F-serratus_M_contig120:88813..889141690962710.4306345-CDS-F-serratus_M_contig120:88813..88914Fucus serratus maleCDSF-serratus_M_contig120 88814..88914 -
1622929112.3138132-CDS-F-serratus_M_contig120:89135..892491622929112.3138132-CDS-F-serratus_M_contig120:89135..89249Fucus serratus maleCDSF-serratus_M_contig120 89136..89249 -
1690962710.4382339-CDS-F-serratus_M_contig120:89135..892491690962710.4382339-CDS-F-serratus_M_contig120:89135..89249Fucus serratus maleCDSF-serratus_M_contig120 89136..89249 -
1622929112.3304057-CDS-F-serratus_M_contig120:89468..896281622929112.3304057-CDS-F-serratus_M_contig120:89468..89628Fucus serratus maleCDSF-serratus_M_contig120 89469..89628 -
1690962710.445746-CDS-F-serratus_M_contig120:89468..896281690962710.445746-CDS-F-serratus_M_contig120:89468..89628Fucus serratus maleCDSF-serratus_M_contig120 89469..89628 -
1622929112.3488927-CDS-F-serratus_M_contig120:89904..901751622929112.3488927-CDS-F-serratus_M_contig120:89904..90175Fucus serratus maleCDSF-serratus_M_contig120 89905..90175 -
1690962710.453587-CDS-F-serratus_M_contig120:89904..901751690962710.453587-CDS-F-serratus_M_contig120:89904..90175Fucus serratus maleCDSF-serratus_M_contig120 89905..90175 -
1622929112.3606377-CDS-F-serratus_M_contig120:90505..906021622929112.3606377-CDS-F-serratus_M_contig120:90505..90602Fucus serratus maleCDSF-serratus_M_contig120 90506..90602 -
1690962710.4614832-CDS-F-serratus_M_contig120:90505..906021690962710.4614832-CDS-F-serratus_M_contig120:90505..90602Fucus serratus maleCDSF-serratus_M_contig120 90506..90602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig120.1579.1prot_F-serratus_M_contig120.1579.1Fucus serratus malepolypeptideF-serratus_M_contig120 87579..90602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig120.1579.1

>prot_F-serratus_M_contig120.1579.1 ID=prot_F-serratus_M_contig120.1579.1|Name=mRNA_F-serratus_M_contig120.1579.1|organism=Fucus serratus male|type=polypeptide|length=335bp
MQRNLARVVSRQPLRDISVVTWFAFSMGCHRFGFHFFWACCTNLLVAGFI
RLLVGAPRPFMFDSRLRPLTDRYDTSHGFPSLETHMATVVVGWWVESIDT
RGGVQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSLITGAVGLFFGWR
LSVHLDSFHLLFRHHVRGTIVVLIIVLGFVSYHVENNTSELMGIKKQEYV
RVLANIINESGQTQNATFGASERDSQDSLRGKVSDAPTDARVTSSGSSRR
RFLEERKDSFHFLHKTIERRAAEKAAVQRDNDIRGSRFTSRGVYLGLLKV
PRRPSLRRGLRLEHISAVVRRTLGHCPHLNGIGG*
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mRNA from alignment at F-serratus_M_contig120:87335..91043-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig120.1579.1 ID=mRNA_F-serratus_M_contig120.1579.1|Name=mRNA_F-serratus_M_contig120.1579.1|organism=Fucus serratus male|type=mRNA|length=3709bp|location=Sequence derived from alignment at F-serratus_M_contig120:87335..91043- (Fucus serratus male)
ACAGCTTTGCGTACAGCTCAAAGATGGTCGCTTCACGAGTTGTGGCGATC
TCTCGTCATATTTGATCTTGCACTTTTGTGGAGGTGAGAGCTATGTATAT
TGTAAAACAGACATTATTCCGCGCCCTCATCGGCGAAGAAACGCGCAAGA
CGACAAAAATAAGACTCCAGCGGAGGTAGAACCTATCCTGCGGTGACATG
TCAAAGTGCACTTTATCGCACATGGATACTATTAATAGTACGTGGTTGCA
AAATGGCCCTGTTAACCCAGTGAACGTTTGCGATGGCAACGCCAAAAAGC
CTTTCTCCATTTAACAACGATCAATACAATACAGCGTACATCGTCTAATT
GACGACAGAGCGCCGCCGCCCGCGCCCCACCGTGAGCTACTCGCATGACG
AAAACAGGATCCAAAATAGCGTTCGGCGATGGCCTCCTTGGATGCAGCGC
AATCTTGCTCGCGTCGTCTCGCGACAACCGCTTCGAGACATCTCCGTGGT
TACATGGTTCGCCTTTTCAATGGGCTGCCATCGATTCGGTGAGTATAATT
CCCGGAAAATTTCACGTGGCGCAACTCAATGGTTTCATTTAGTCCCTTTT
ATTTAAGTGCCTTAGGTAGCTATTATAGCATACAAGGCAATATTGAATAA
TTTTAAAGTCTGGTTTGGTGGTGGTAATGGTACAACCGTTGCGCAGCCCT
GACAGTCTGGGGCAGCGCCAGAGCTTGTCCCCAAAACGTAGGTACCCCAC
GACAGATGAATGAAAGCGAAACCTCGGTTCGAGACCCTGCGGCGCAACAG
CGAAACGCCATATAATCCCGACAATCCTCTGTAACGTAAGCTACCAGTTT
TGCCACGATGTTGCTCAGGGTTCCACTTCTTCTGGGCGTGCTGCACGAAC
CTCCTCGTTGCTGGCTTCATTCGTCTTCTAGTGGGGGCGCCACGCCCTTT
CATGTTCGACTCACGTCTGAGGCCCCTAACAGACCGTTACGACACGAGTC
ACGGTTTCCCTTCTCTAGAAACCCACATGGCGACAGTAGTGGTTGGTTGG
TGGGTGGAAAGCATCGACACACGAGGAGGAGTCCAGTCAATTGCGAGACT
TCTGGCCGTCATCTACATTTGCTTCGTTGGTTTCACGAGGTAGGTGCTTG
ACAAGATTGTCCATAGCAGAGTCAACATTACCGTGGTACAAGAGTAGTCC
CTGGGACTATGATGGCGGCTAAGGCTGTGCGACCTGCCATAAGTTTTTCT
GTTGGGAAAGGCTCTCACATGCGTGGTTACCATCAAGGGGGAAGATTGGC
ATTCTCGTACGCGACGACAAAAATGGAGTGGTGAGCGTCTCCACATTTAT
AAACCTCTGAGTTGCGTACCCATTGAAAATGTCAATTTCGAGAACCGGCG
ACCTCGCTCTTGCAGGGTGTACGCGTGCAGTCGGTTTGTGCACCAGGTGC
TGTTGAGCCTCATAACCGGGGCCGTAGGCCTTTTCTTTGGATGGCGGCTT
TCGGTCCACCTAGACAGCTTCCATCTCTTGTTTCGGCATCATGTTCGCGG
AACGATTGTGGTGCTCATCATTGTGGTAAGCGATGGCCTTCGAAGCTTCA
GGGCAACTGCTTGCTTTTGGGTGACCACCTAACCTAGATGTTATGTGGGA
TTCATAAGAGTTAGTCGCAGCCACTTCCTAGAGCTGTTAGGATTAAGTCG
TTTGGTATTTTCCGACAAAAATAGAGACGCCGCGATCCAATCATGAACTT
GAACCGTTTGAGGCAATGGTCGGACGGCACGTCCCTCGACGCAGCTGGGA
TTTGTTTCCTACCACGTGGAGAACAACACTAGCGAGCTGATGGGCATCAA
GAAGCAGGAATACGTGAGAGTATTGGCAAATATAATCAACGAGTCGGGTC
AAACGCAGGTGATCATAGGATTGGCGTCACTAGGTGATTACTTGCGCAGA
AGAGCCAACCCAAATTATACCGGCGTGGGCATGAGCACGGGCATCGCGCA
TTAGTTGCTGCACGGAATATGCTTCGAAACTATGGCGCAGATCCCATTTG
TTTTGCAATGCGCGCGGCCCACTTAAACGATCTCGATCATTGACCAAACC
ACGGTCGTGTGGTGTCGTGAACGATGAAGAACGCGACGTTTGGAGCTTCG
GAAAGAGATAGTCAGGATAGCTTGCGGGGAAAAGTTTCCGATGCTCCGAC
TGACGCCCGGGTGACCTCGTCAGGAAGTAGGTCAGACACGTGCCGCGGTA
GAACTGCCGCGTAGCGCATAACGTTCAGTCACACTTCCAGGCACATATTG
ACATCCGATTTGCGAGTCTAGAGCTTTACATAACACGTTAATTCCCTGCG
TGTGGCTACCCTGGACATAACATGCAGTGGTATATCTCAAAGAGATTGCC
ATCGTAAAGGATATCGCTCGCTCAGACAGTACGCGCCTTGATCGGTGTGG
GCTATATTCCAACTATCAAGGCTACGTTGTGTTAGGGAAACGGCCTAGAT
CTGCCGCCCGCTGCGCTTGAGGAAAAAACACACACATTTTATAAGGGGTC
TACGCGACACATTACACATGGAATGACCTACCCGCACACGTCTGGCATGA
AATTGAACACGCACATTGCGCATACCGGTACGCTCCAGTAAAATTTCTCC
CTCTTGTTAAGATATTTACGTTGCATTCAAACGCCTTCAAGCGATAGAAC
GAAAGCTACCGTGATTCCCCATCAAATTTGATTTCAACCCACAACATGCC
CTTGCGTTGCAGCCGGCGACGCTTCCTAGAGGAGCGCAAAGATTCTTTTC
ATTTTCTTCACAAGACTATCGAGCGCCGCGCCGCTGAGAAGGCGGCCGTC
CAACGAGACAACGACATCAGGGGCTCACGATTTACATCACGCGGCGGCAG
CTTCGATGGCGAGGTAGATGGGGTAGGGAGTTATGGAGAGCGACGAGGGA
CGGGAAGAAGGCGGCATGGGAACAGTGAACGCTTTTCTGCCGCGGCAGGA
CAGGCTTAAGGAGCTTCGTTTCAATACTATACTATCCGAGTTCTCGATAT
TAATAGTTGAGTATTCTAGACTCCTCCGCAGGTGGTTTGATTGATGTTAT
CACGTCAAAAGCTGCAATGCCAGCGTGAGCGAGCTCATTACATATAGGTA
CCTACAGTATAGACAGCGGGCAAGGAGGACATATGAGAGGGGGGGTGGGA
TTACTATTAATACTGCAGTGTAACGCCTTACACCTTTTGAAAGGAATTGA
AAAATGTAGAGTTCTTTACTGCCGATGGGATGGCCGTTGAAGTGCTGCAA
GCCGCATGATGTCGACTTCGACCTAGCAACGCGGAAGTTTACCTCGGTTT
ACTGAAGGTGCCAAGGCGCCCGTCACTTAGGCGTGGTCTTCGACTTGAGC
ATATTTCGGCGGTAGTTCGCCGTACTCTTGGCCATTGCCCGCATCTAAAC
GGAATCGGCGGATGACAGAAAACGTGTGCAGGTAACATATCCAACCCCGC
GGGTTAACTCGAACGTTTCACCGTTCTTTTAGTCCCACAGTTTGAACTCC
GCACTCTCCTGCTACAATACATACTCTTTGCGGCAATCTGTCGATATCTC
AACTAGCTCTATGGTACTAGGCCCACGAGAGAGTCAACAGAGACGGTAAT
AGAAACAAGTGCTGTGGATTAGCTAGAAAAGACATCAAGTAGGACGGAAT
GGCATTACT
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Coding sequence (CDS) from alignment at F-serratus_M_contig120:87335..91043-

>mRNA_F-serratus_M_contig120.1579.1 ID=mRNA_F-serratus_M_contig120.1579.1|Name=mRNA_F-serratus_M_contig120.1579.1|organism=Fucus serratus male|type=CDS|length=2010bp|location=Sequence derived from alignment at F-serratus_M_contig120:87335..91043- (Fucus serratus male)
ATGCAGCGCAATCTTGCTCGCGTCGTCTCGCGACAACCGCTTCGAGACAT
CTCCGTGGTTACATGGTTCGCCTTTTCAATGGGCTGCCATCGATTCGATG
CAGCGCAATCTTGCTCGCGTCGTCTCGCGACAACCGCTTCGAGACATCTC
CGTGGTTACATGGTTCGCCTTTTCAATGGGCTGCCATCGATTCGGGTTCC
ACTTCTTCTGGGCGTGCTGCACGAACCTCCTCGTTGCTGGCTTCATTCGT
CTTCTAGTGGGGGCGCCACGCCCTTTCATGTTCGACTCACGTCTGAGGCC
CCTAACAGACCGTTACGACACGAGTCACGGTTTCCCTTCTCTAGAAACCC
ACATGGCGACAGTAGTGGTTGGTTGGTGGGTGGAAAGCATCGACACACGA
GGAGGAGTCCAGTCAATTGCGAGACTTCTGGCCGTCATCTACATTTGCTT
CGTTGGTTTCACGAGGGTTCCACTTCTTCTGGGCGTGCTGCACGAACCTC
CTCGTTGCTGGCTTCATTCGTCTTCTAGTGGGGGCGCCACGCCCTTTCAT
GTTCGACTCACGTCTGAGGCCCCTAACAGACCGTTACGACACGAGTCACG
GTTTCCCTTCTCTAGAAACCCACATGGCGACAGTAGTGGTTGGTTGGTGG
GTGGAAAGCATCGACACACGAGGAGGAGTCCAGTCAATTGCGAGACTTCT
GGCCGTCATCTACATTTGCTTCGTTGGTTTCACGAGGGTGTACGCGTGCA
GTCGGTTTGTGCACCAGGTGCTGTTGAGCCTCATAACCGGGGCCGTAGGC
CTTTTCTTTGGATGGCGGCTTTCGGTCCACCTAGACAGCTTCCATCTCTT
GTTTCGGCATCATGTTCGCGGAACGATTGTGGTGCTCATCATTGTGGGTG
TACGCGTGCAGTCGGTTTGTGCACCAGGTGCTGTTGAGCCTCATAACCGG
GGCCGTAGGCCTTTTCTTTGGATGGCGGCTTTCGGTCCACCTAGACAGCT
TCCATCTCTTGTTTCGGCATCATGTTCGCGGAACGATTGTGGTGCTCATC
ATTGTGCTGGGATTTGTTTCCTACCACGTGGAGAACAACACTAGCGAGCT
GATGGGCATCAAGAAGCAGGAATACGTGAGAGTATTGGCAAATATAATCA
ACGAGTCGGGTCAAACGCAGCTGGGATTTGTTTCCTACCACGTGGAGAAC
AACACTAGCGAGCTGATGGGCATCAAGAAGCAGGAATACGTGAGAGTATT
GGCAAATATAATCAACGAGTCGGGTCAAACGCAGAACGCGACGTTTGGAG
CTTCGGAAAGAGATAGTCAGGATAGCTTGCGGGGAAAAGTTTCCGATGCT
CCGACTGACGCCCGGGTGACCTCGTCAGGAAGTAGAACGCGACGTTTGGA
GCTTCGGAAAGAGATAGTCAGGATAGCTTGCGGGGAAAAGTTTCCGATGC
TCCGACTGACGCCCGGGTGACCTCGTCAGGAAGTAGCCGGCGACGCTTCC
TAGAGGAGCGCAAAGATTCTTTTCATTTTCTTCACAAGACTATCGAGCGC
CGCGCCGCTGAGAAGGCGGCCGTCCAACGAGACAACGACATCAGGGGCTC
ACGATTTACATCACGCGGCGCCGGCGACGCTTCCTAGAGGAGCGCAAAGA
TTCTTTTCATTTTCTTCACAAGACTATCGAGCGCCGCGCCGCTGAGAAGG
CGGCCGTCCAACGAGACAACGACATCAGGGGCTCACGATTTACATCACGC
GGCGTTTACCTCGGTTTACTGAAGGTGCCAAGGCGCCCGTCACTTAGGCG
TGGTCTTCGACTTGAGCATATTTCGGCGGTAGTTCGCCGTACTCTTGGCC
ATTGCCCGCATCTAAACGGAATCGGCGGATGATTTACCTCGGTTTACTGA
AGGTGCCAAGGCGCCCGTCACTTAGGCGTGGTCTTCGACTTGAGCATATT
TCGGCGGTAGTTCGCCGTACTCTTGGCCATTGCCCGCATCTAAACGGAAT
CGGCGGATGA
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