mRNA_F-serratus_M_contig12.1575.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig12.1575.1
Unique NamemRNA_F-serratus_M_contig12.1575.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig12.1575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig12contigF-serratus_M_contig12:1421185..1421926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size553
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929101.0250714-CDS-F-serratus_M_contig12:1421186..14214371622929101.0250714-CDS-F-serratus_M_contig12:1421186..1421437Fucus serratus maleCDSF-serratus_M_contig12 1421187..1421437 -
1690962705.1529732-CDS-F-serratus_M_contig12:1421186..14214371690962705.1529732-CDS-F-serratus_M_contig12:1421186..1421437Fucus serratus maleCDSF-serratus_M_contig12 1421187..1421437 -
1622929101.037437-CDS-F-serratus_M_contig12:1421628..14219261622929101.037437-CDS-F-serratus_M_contig12:1421628..1421926Fucus serratus maleCDSF-serratus_M_contig12 1421629..1421926 -
1690962705.1686647-CDS-F-serratus_M_contig12:1421628..14219261690962705.1686647-CDS-F-serratus_M_contig12:1421628..1421926Fucus serratus maleCDSF-serratus_M_contig12 1421629..1421926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig12.1575.1prot_F-serratus_M_contig12.1575.1Fucus serratus malepolypeptideF-serratus_M_contig12 1421187..1421926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig12.1575.1

>prot_F-serratus_M_contig12.1575.1 ID=prot_F-serratus_M_contig12.1575.1|Name=mRNA_F-serratus_M_contig12.1575.1|organism=Fucus serratus male|type=polypeptide|length=183bp
LLVCVSPRALWLAGDFSYDCMFGDERGGGLSGQPVGPQVDTATIRTVLST
NRVDSRSFSSICWAFRRTHKSADPIRLLCIRLASPLTLSLPSGFVPSMYG
LLVCVSPRALWLAGDFSYDYMFGDERGGGLSGQPVGPQVDTATIRTVLST
NRVDSRSFSSIFWAFRRTHKSADPIRLLCIRLA
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mRNA from alignment at F-serratus_M_contig12:1421185..1421926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig12.1575.1 ID=mRNA_F-serratus_M_contig12.1575.1|Name=mRNA_F-serratus_M_contig12.1575.1|organism=Fucus serratus male|type=mRNA|length=742bp|location=Sequence derived from alignment at F-serratus_M_contig12:1421185..1421926- (Fucus serratus male)
CTTCTGGTTTGTGTTTCACCCCGGGCCCTATGGCTTGCGGGGGATTTTTC
GTATGACTGTATGTTTGGGGACGAGAGGGGAGGAGGACTTTCTGGGCAAC
CCGTGGGCCCACAGGTGGACACTGCAACCATTAGAACAGTATTGAGCACA
AATCGCGTGGATTCGAGAAGTTTTAGCTCAATATGTTGGGCGTTCCGGCG
TACACATAAGAGCGCAGACCCTATTCGGCTACTGTGTATCCGACTAGCTT
CACCCTTAACTCTCTCTTTGCCCTCAGGATTTGTGCCTAGTATGTATGGT
CATCACATATAGCAGAGTATGGATCAACCGTGTAAGGTTGCCAATCCTGC
TCGTGGTCAGCTGAACAGGGAAAATGAATATTCCCCTGTCCCCGTGCGTG
CCTGAGAATTTGGTCTCGCGAAACGGGTTCAGCCGTCCCGTCCCGCGTCA
GCCTGCTCATTCTCCATACCCAGGCTGAATCTGGTGTAGGACTTCTGGTT
TGTGTTTCACCCCGGGCCCTATGGCTTGCGGGGGATTTTTCGTATGACTA
TATGTTTGGGGACGAGAGGGGAGGAGGACTTTCTGGGCAACCCGTGGGCC
CACAGGTGGACACTGCAACCATTAGAACAGTATTGAGCACAAATCGCGTG
GATTCGAGAAGTTTTAGCTCAATATTTTGGGCGTTCCGGCGTACACATAA
GAGCGCAGACCCTATTCGGCTACTGTGTATCCGACTAGCTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig12:1421185..1421926-

>mRNA_F-serratus_M_contig12.1575.1 ID=mRNA_F-serratus_M_contig12.1575.1|Name=mRNA_F-serratus_M_contig12.1575.1|organism=Fucus serratus male|type=CDS|length=1098bp|location=Sequence derived from alignment at F-serratus_M_contig12:1421185..1421926- (Fucus serratus male)
CTTCTGGTTTGTGTTTCACCCCGGGCCCTATGGCTTGCGGGGGATTTTTC
GTATGACTGTATGTTTGGGGACGAGAGGGGAGGAGGACTTTCTGGGCAAC
CCGTGGGCCCACAGGTGGACACTGCAACCATTAGAACAGTATTGAGCACA
AATCGCGTGGATTCGAGAAGTTTTAGCTCAATATGTTGGGCGTTCCGGCG
TACACATAAGAGCGCAGACCCTATTCGGCTACTGTGTATCCGACTAGCTT
CACCCTTAACTCTCTCTTTGCCCTCAGGATTTGTGCCTAGTATGTATGCT
TCTGGTTTGTGTTTCACCCCGGGCCCTATGGCTTGCGGGGGATTTTTCGT
ATGACTGTATGTTTGGGGACGAGAGGGGAGGAGGACTTTCTGGGCAACCC
GTGGGCCCACAGGTGGACACTGCAACCATTAGAACAGTATTGAGCACAAA
TCGCGTGGATTCGAGAAGTTTTAGCTCAATATGTTGGGCGTTCCGGCGTA
CACATAAGAGCGCAGACCCTATTCGGCTACTGTGTATCCGACTAGCTTCA
CCCTTAACTCTCTCTTTGCCCTCAGGATTTGTGCCTAGTATGTATGGACT
TCTGGTTTGTGTTTCACCCCGGGCCCTATGGCTTGCGGGGGATTTTTCGT
ATGACTATATGTTTGGGGACGAGAGGGGAGGAGGACTTTCTGGGCAACCC
GTGGGCCCACAGGTGGACACTGCAACCATTAGAACAGTATTGAGCACAAA
TCGCGTGGATTCGAGAAGTTTTAGCTCAATATTTTGGGCGTTCCGGCGTA
CACATAAGAGCGCAGACCCTATTCGGCTACTGTGTATCCGACTAGCTGAC
TTCTGGTTTGTGTTTCACCCCGGGCCCTATGGCTTGCGGGGGATTTTTCG
TATGACTATATGTTTGGGGACGAGAGGGGAGGAGGACTTTCTGGGCAACC
CGTGGGCCCACAGGTGGACACTGCAACCATTAGAACAGTATTGAGCACAA
ATCGCGTGGATTCGAGAAGTTTTAGCTCAATATTTTGGGCGTTCCGGCGT
ACACATAAGAGCGCAGACCCTATTCGGCTACTGTGTATCCGACTAGCT
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