mRNA_F-serratus_M_contig12.1570.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig12.1570.1
Unique NamemRNA_F-serratus_M_contig12.1570.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig12.1570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig12contigF-serratus_M_contig12:1245959..1247537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929100.9746537-CDS-F-serratus_M_contig12:1245958..12461351622929100.9746537-CDS-F-serratus_M_contig12:1245958..1246135Fucus serratus maleCDSF-serratus_M_contig12 1245959..1246135 +
1690962705.1273212-CDS-F-serratus_M_contig12:1245958..12461351690962705.1273212-CDS-F-serratus_M_contig12:1245958..1246135Fucus serratus maleCDSF-serratus_M_contig12 1245959..1246135 +
1622929100.9880822-CDS-F-serratus_M_contig12:1247246..12475371622929100.9880822-CDS-F-serratus_M_contig12:1247246..1247537Fucus serratus maleCDSF-serratus_M_contig12 1247247..1247537 +
1690962705.1430116-CDS-F-serratus_M_contig12:1247246..12475371690962705.1430116-CDS-F-serratus_M_contig12:1247246..1247537Fucus serratus maleCDSF-serratus_M_contig12 1247247..1247537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig12.1570.1prot_F-serratus_M_contig12.1570.1Fucus serratus malepolypeptideF-serratus_M_contig12 1245959..1247537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig12.1570.1

>prot_F-serratus_M_contig12.1570.1 ID=prot_F-serratus_M_contig12.1570.1|Name=mRNA_F-serratus_M_contig12.1570.1|organism=Fucus serratus male|type=polypeptide|length=156bp
NGGDSGKEDEGGMENWHNKEAAREAKAAKSADSVMKQAEEIEDPYYRDCF
LRVHKLHHATWHQEGSAEGMPDEAGPRESGPPCCDFGVPDDRTDELDMMR
KKREGQKPRPSAFALERLPRLRKEDLPLFEEDVGAFAFRFFDLMFPREAR
EIIATK
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mRNA from alignment at F-serratus_M_contig12:1245959..1247537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig12.1570.1 ID=mRNA_F-serratus_M_contig12.1570.1|Name=mRNA_F-serratus_M_contig12.1570.1|organism=Fucus serratus male|type=mRNA|length=1579bp|location=Sequence derived from alignment at F-serratus_M_contig12:1245959..1247537+ (Fucus serratus male)
AATGGCGGGGATTCCGGTAAGGAAGATGAAGGAGGAATGGAGAACTGGCA
TAATAAGGAGGCAGCACGAGAAGCAAAGGCTGCTAAGTCGGCGGATAGCG
TGATGAAGCAGGCAGAAGAGATCGAGGATCCTTACTACCGGGACTGTTTC
CTGCGAGTTCACAAGCTTCACCACGCGGTAAGGTTTTTCATCGCTTTTAC
CGTCTCGAAGCGTGTGCATTGACCGGTGTGTGCACTAATCGTTGTGTGTA
CAGCCCACAAAACTTCATTTCTGTGCCCATAAAATTTCTATGCTCGTGAC
AAAAGCGAATTTCTCGGAGTTTGGAAGCCTAGGAAACAAAACACAGAAAT
TATACTCCTATTCATAGTACTGTATACAGTTAGTATATGTCATCGCTCTT
TGTGTTTGTGGTCGTGATTGATGCACACCAGTTGAATGTATGTTGTGCAA
AGCTACCATGGTACCATATTTCAGCTGACAGGTGTCTTATTTGTGCGGCA
GTTCGCTTGTTATCTGCCCGCAGTTGTTTATTTTCACACCCAACCTGCGA
ACCTCTGCTGTTGTTTCGTTCGCCTCCACAAAAAGTATTTGTAGCTACCC
CACTATTAATAGTACATAGAAACTGTTGACTGTTTTTACCCTCGGCGTGC
GGCTTGTCTGCTGTTCGTGTACATATGTATCATCGGTCATTGATAATTGA
TACTGGTAGGGTACAGACATCCGTAAAACACAGCACCTGCGTCACCGCGT
CGCCTGCGTTTTGTCTGCCGCCAGGCCAGACTGTACGTACGTGCGTAAGT
ATAAGAAACTCTTCTTCGGTATTAATAGTACTAATCTGTAGCGGTTAGAT
CTGCTCAAAAGCTGGGACATACGCACGGTGACCATGTGTACATAGATCGG
CGTTATAGTCTGGCGAAATTTGAAGAAAATATACAGAAGCAAAAATGAGA
TACTGGGATGGAAGGCCGCAACGAAGAGGGAGCGTAAGCTCTGCAACCCC
GGTTTTTTCTTGTCGCACGTTAGGCCGTCAGAAAATATAAGCACATACAT
TTTTCAGAGTCCTTTCGGGCACAGGAAGTAACATATTTTTTCTGTGCTGT
AATGTTTTGTGCGCCGTTTTCTTACAACGATCGGCCTTATTATAGCTCAT
TACTGTAATATTTTGCCTGGAAACGTAGACAGAGTATTAGTATTATAGGA
TGCTTCCACGCGATAATCCAGCTCAACATTTCGAAAAAGTGTTTAGGTTC
ATACACCAAATGCTAGGTTTTATTTTTTGCCCTCGCAGACTTGGCACCAA
GAGGGTAGTGCCGAGGGAATGCCAGATGAAGCGGGGCCGCGAGAGAGCGG
ACCCCCCTGTTGCGACTTCGGAGTTCCCGACGACAGGACCGACGAGCTCG
ACATGATGCGCAAGAAGAGAGAAGGGCAGAAGCCACGACCGTCAGCTTTT
GCGTTAGAACGTTTACCACGACTTCGGAAGGAAGACCTGCCGCTTTTCGA
AGAGGATGTCGGCGCATTCGCATTCAGGTTCTTTGACTTGATGTTCCCAC
GAGAGGCGAGGGAAATAATTGCGACGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig12:1245959..1247537+

>mRNA_F-serratus_M_contig12.1570.1 ID=mRNA_F-serratus_M_contig12.1570.1|Name=mRNA_F-serratus_M_contig12.1570.1|organism=Fucus serratus male|type=CDS|length=936bp|location=Sequence derived from alignment at F-serratus_M_contig12:1245959..1247537+ (Fucus serratus male)
AATGGCGGGGATTCCGGTAAGGAAGATGAAGGAGGAATGGAGAACTGGCA
TAATAAGGAGGCAGCACGAGAAGCAAAGGCTGCTAAGTCGGCGGATAGCG
TGATGAAGCAGGCAGAAGAGATCGAGGATCCTTACTACCGGGACTGTTTC
CTGCGAGTTCACAAGCTTCACCACGCGAATGGCGGGGATTCCGGTAAGGA
AGATGAAGGAGGAATGGAGAACTGGCATAATAAGGAGGCAGCACGAGAAG
CAAAGGCTGCTAAGTCGGCGGATAGCGTGATGAAGCAGGCAGAAGAGATC
GAGGATCCTTACTACCGGGACTGTTTCCTGCGAGTTCACAAGCTTCACCA
CGCGACTTGGCACCAAGAGGGTAGTGCCGAGGGAATGCCAGATGAAGCGG
GGCCGCGAGAGAGCGGACCCCCCTGTTGCGACTTCGGAGTTCCCGACGAC
AGGACCGACGAGCTCGACATGATGCGCAAGAAGAGAGAAGGGCAGAAGCC
ACGACCGTCAGCTTTTGCGTTAGAACGTTTACCACGACTTCGGAAGGAAG
ACCTGCCGCTTTTCGAAGAGGATGTCGGCGCATTCGCATTCAGGTTCTTT
GACTTGATGTTCCCACGAGAGGCGAGGGAAATAATTGCGACGAAGACTTG
GCACCAAGAGGGTAGTGCCGAGGGAATGCCAGATGAAGCGGGGCCGCGAG
AGAGCGGACCCCCCTGTTGCGACTTCGGAGTTCCCGACGACAGGACCGAC
GAGCTCGACATGATGCGCAAGAAGAGAGAAGGGCAGAAGCCACGACCGTC
AGCTTTTGCGTTAGAACGTTTACCACGACTTCGGAAGGAAGACCTGCCGC
TTTTCGAAGAGGATGTCGGCGCATTCGCATTCAGGTTCTTTGACTTGATG
TTCCCACGAGAGGCGAGGGAAATAATTGCGACGAAG
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