mRNA_F-serratus_M_contig12.1568.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig12.1568.1
Unique NamemRNA_F-serratus_M_contig12.1568.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig12.1568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig12contigF-serratus_M_contig12:1172077..1174465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1943
Cds size1371
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig12.1568.1prot_F-serratus_M_contig12.1568.1Fucus serratus malepolypeptideF-serratus_M_contig12 1172586..1174402 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929100.9003773-UTR-F-serratus_M_contig12:1172076..11725851622929100.9003773-UTR-F-serratus_M_contig12:1172076..1172585Fucus serratus maleUTRF-serratus_M_contig12 1172077..1172585 -
1690962705.0718687-UTR-F-serratus_M_contig12:1172076..11725851690962705.0718687-UTR-F-serratus_M_contig12:1172076..1172585Fucus serratus maleUTRF-serratus_M_contig12 1172077..1172585 -
1622929100.9374273-UTR-F-serratus_M_contig12:1174402..11744651622929100.9374273-UTR-F-serratus_M_contig12:1174402..1174465Fucus serratus maleUTRF-serratus_M_contig12 1174403..1174465 -
1690962705.1108947-UTR-F-serratus_M_contig12:1174402..11744651690962705.1108947-UTR-F-serratus_M_contig12:1174402..1174465Fucus serratus maleUTRF-serratus_M_contig12 1174403..1174465 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929100.910729-CDS-F-serratus_M_contig12:1172585..11729951622929100.910729-CDS-F-serratus_M_contig12:1172585..1172995Fucus serratus maleCDSF-serratus_M_contig12 1172586..1172995 -
1690962705.0860572-CDS-F-serratus_M_contig12:1172585..11729951690962705.0860572-CDS-F-serratus_M_contig12:1172585..1172995Fucus serratus maleCDSF-serratus_M_contig12 1172586..1172995 -
1622929100.9231024-CDS-F-serratus_M_contig12:1173441..11744021622929100.9231024-CDS-F-serratus_M_contig12:1173441..1174402Fucus serratus maleCDSF-serratus_M_contig12 1173442..1174402 -
1690962705.0983684-CDS-F-serratus_M_contig12:1173441..11744021690962705.0983684-CDS-F-serratus_M_contig12:1173441..1174402Fucus serratus maleCDSF-serratus_M_contig12 1173442..1174402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig12.1568.1

>prot_F-serratus_M_contig12.1568.1 ID=prot_F-serratus_M_contig12.1568.1|Name=mRNA_F-serratus_M_contig12.1568.1|organism=Fucus serratus male|type=polypeptide|length=457bp
MTEAPVTETPAPEDQASKAPPTEAPPAESTAREAPVPDASSAEAPALETP
STETPATEVEAAEIPPIKAPMTEVSVPDVQATDIPSPETTTPESPATEAP
PKSPAPEVQHVEPPGTEAPPVEAPVSEATVPGGAPAETPVTETPDPETPI
TGASATEIPPAEAPTTEVSVPGAEATETPAPETPPTETPSTKTPAMVTPP
ADAPASETPSAEASSVEDEVTEAPPTMASPGETPAAEKLATKAPATEAPP
IESPATRALPTEPQPDEAPPTEAPMNEASPAEDTPAAVDLSAEPKEMPAA
ETESEGETAAHGESAESSSTGAVEGPPETGSELDGAVKALIGSASSAPSV
AEEQLADPGMVEDDDQQQDGDKSEETSSEAEPAGEQDPAGADEPEIDVVP
MEESSSSKEMVPSAEGVPNDGRSAVHLSPGSLMICLSVLSVCVTLGVFFA
HAPRSS*
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mRNA from alignment at F-serratus_M_contig12:1172077..1174465-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig12.1568.1 ID=mRNA_F-serratus_M_contig12.1568.1|Name=mRNA_F-serratus_M_contig12.1568.1|organism=Fucus serratus male|type=mRNA|length=2389bp|location=Sequence derived from alignment at F-serratus_M_contig12:1172077..1174465- (Fucus serratus male)
CCGACCTCCGAGGCCCCGCCCGCCGAGGCTTCAGCTGACAAGGCTCCCCC
CACTGAGTCTCTAATGACTGAGGCTCCGGTCACCGAGACTCCAGCCCCTG
AAGATCAGGCCTCCAAGGCGCCGCCTACCGAGGCTCCGCCCGCCGAATCT
ACAGCAAGGGAGGCTCCGGTACCCGATGCCTCGTCCGCTGAGGCTCCAGC
CTTAGAGACTCCTTCCACTGAAACCCCAGCCACAGAGGTTGAAGCTGCCG
AAATTCCGCCCATTAAGGCTCCGATGACCGAGGTTTCGGTGCCTGACGTT
CAGGCTACAGACATTCCGTCTCCTGAAACAACGACCCCTGAAAGTCCTGC
AACTGAGGCCCCACCCAAGTCTCCGGCACCCGAGGTCCAGCACGTTGAAC
CTCCAGGCACCGAGGCCCCGCCTGTCGAGGCTCCAGTAAGCGAGGCTACG
GTACCCGGGGGTGCACCCGCTGAGACTCCAGTCACAGAGACTCCGGATCC
TGAGACCCCGATAACGGGGGCTTCAGCTACCGAGATTCCGCCCGCTGAGG
CTCCGACGACCGAGGTTTCAGTGCCTGGTGCTGAGGCCACCGAGACTCCG
GCCCCCGAAACTCCGCCCACTGAGACCCCTTCCACCAAAACCCCGGCCAT
GGTGACTCCGCCTGCCGATGCTCCGGCCTCAGAGACTCCATCTGCAGAGG
CTTCATCCGTCGAAGATGAAGTAACTGAGGCCCCGCCGACGATGGCTTCG
CCCGGTGAGACACCAGCCGCAGAGAAATTGGCCACAAAGGCTCCAGCTAC
GGAGGCCCCACCCATCGAGTCTCCGGCAACACGCGCTCTTCCCACTGAAC
CACAGCCCGATGAGGCTCCGCCTACTGAGGCTCCGATGAACGAAGCTTCA
CCCGCCGAAGACACACCTGCTGCGGTAGATCTTTCGGCAGAACCGAAAGA
AATGCCTGCTGCGGAGACTGAATCTGAGGGAGAGACGGCGGCACATGGAG
AGAGTGCAGAATCTTCCTCCACTGGTGAGATTAAGTTTCTATTATATGTA
GAATCGTCTATGTGTTCACAAAACCGTAAAAAAAGTGGATGAGCGCGTCG
TACAGGCCGCGTACCCTCTGCTTGATGTTGGTTTTTGTTATTTTTGTCTC
CCGCCTATTTGTACGCCCTACCGCCACATCGGGGATAATATGAGTATAGA
GTGGGTGTAGAGCGAAGAAGTCCGTACGTCCGCGTCGTAATCAAGATTTC
CGACAGGGTCGTGTACGTTCTGTATCGTAGACGGATAACGTGCGCATTGT
GCACACGCGTCGACATAACGAAGACTTAACTTGCGCGTATGTCCCACCGT
TCGGCAACTGCGAGATAAGAATCGTCGTCGGACAAACGATTTCTCCAGTT
GTAACCCCTAAACCTCTCGCCCATCCTCCGCTCGTGATCCAAACAACCAA
ACCGGGCGAACACCTTCCAGGGGCTGTGGAAGGCCCACCGGAGACCGGTT
CCGAACTCGATGGGGCTGTGAAGGCGTTGATTGGATCGGCTTCCTCCGCG
CCTTCTGTGGCGGAGGAACAGCTGGCCGATCCTGGGATGGTAGAAGACGA
CGACCAGCAGCAGGATGGTGACAAGAGTGAAGAAACTTCGTCGGAGGCCG
AGCCGGCAGGAGAGCAAGACCCGGCAGGCGCCGACGAGCCCGAGATCGAC
GTGGTCCCGATGGAGGAAAGCTCGTCTTCCAAGGAGATGGTTCCTTCGGC
CGAAGGTGTGCCCAATGACGGCCGTTCGGCAGTGCACCTTTCCCCCGGAT
CTTTGATGATTTGTCTCAGCGTGCTTTCTGTCTGCGTGACGCTGGGTGTG
TTCTTCGCCCACGCCCCACGCTCGTCCTAGCTCCCCGGTGTATTCTGTCA
TGATCGAGATATCTTTTTAGAGGGGAGGGAGGCGGGGTCGTTGGCCTGGA
CGCTTGATTTGCGTAGATGCTGTTAAAACCATTTTTTGTTTTGTGCGGCA
TTCTGTGAGTGCTTGGGTGGCGGGTCGCGTTTAAACGCGAGCGATCAGCA
TGTGAAGGTATTATGTACCAGTATGTGAAATCTCATGGCGTGTTTCTCGT
CTGCGGTCTGTGGTGTGTTGGAAGAAAGCTCTTGCGCGTATTCTTCGAAA
CTCTGGCGTATCGTTCGACGTAGTAGTTGCTGCTGTAGGCGTTTTAGACG
TTTCATGGTTTTTATACTTAAAAAGAGTACTTATTTTCAGTCTATATTCC
GTGCTTTTCTCGGAGCTTTGATTTCCACGTGTTGCACGCTGGTGTCGAGG
CAAAAAGTCGCGAGAGCTCATGCATCGTGCTGCCATCCAATGGATCCATC
AATCGACTCATCAAATATTCGGAATCGCATCCCGACATA
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Coding sequence (CDS) from alignment at F-serratus_M_contig12:1172077..1174465-

>mRNA_F-serratus_M_contig12.1568.1 ID=mRNA_F-serratus_M_contig12.1568.1|Name=mRNA_F-serratus_M_contig12.1568.1|organism=Fucus serratus male|type=CDS|length=2742bp|location=Sequence derived from alignment at F-serratus_M_contig12:1172077..1174465- (Fucus serratus male)
ATGACTGAGGCTCCGGTCACCGAGACTCCAGCCCCTGAAGATCAGGCCTC
CAAGGCGCCGCCTACCGAGGCTCCGCCCGCCGAATCTACAGCAAGGGAGG
CTCCGGTACCCGATGCCTCGTCCGCTGAGGCTCCAGCCTTAGAGACTCCT
TCCACTGAAACCCCAGCCACAGAGGTTGAAGCTGCCGAAATTCCGCCCAT
TAAGGCTCCGATGACCGAGGTTTCGGTGCCTGACGTTCAGGCTACAGACA
TTCCGTCTCCTGAAACAACGACCCCTGAAAGTCCTGCAACTGAGGCCCCA
CCCAAGTCTCCGGCACCCGAGGTCCAGCACGTTGAACCTCCAGGCACCGA
GGCCCCGCCTGTCGAGGCTCCAGTAAGCGAGGCTACGGTACCCGGGGGTG
CACCCGCTGAGACTCCAGTCACAGAGACTCCGGATCCTGAGACCCCGATA
ACGGGGGCTTCAGCTACCGAGATTCCGCCCGCTGAGGCTCCGACGACCGA
GGTTTCAGTGCCTGGTGCTGAGGCCACCGAGACTCCGGCCCCCGAAACTC
CGCCCACTGAGACCCCTTCCACCAAAACCCCGGCCATGGTGACTCCGCCT
GCCGATGCTCCGGCCTCAGAGACTCCATCTGCAGAGGCTTCATCCGTCGA
AGATGAAGTAACTGAGGCCCCGCCGACGATGGCTTCGCCCGGTGAGACAC
CAGCCGCAGAGAAATTGGCCACAAAGGCTCCAGCTACGGAGGCCCCACCC
ATCGAGTCTCCGGCAACACGCGCTCTTCCCACTGAACCACAGCCCGATGA
GGCTCCGCCTACTGAGGCTCCGATGAACGAAGCTTCACCCGCCGAAGACA
CACCTGCTGCGGTAGATCTTTCGGCAGAACCGAAAGAAATGCCTGCTGCG
GAGACTGAATCTGAGGGAGAGACGGCGGCACATGGAGAGAGTGCAGAATC
TTCCTCCACTGATGACTGAGGCTCCGGTCACCGAGACTCCAGCCCCTGAA
GATCAGGCCTCCAAGGCGCCGCCTACCGAGGCTCCGCCCGCCGAATCTAC
AGCAAGGGAGGCTCCGGTACCCGATGCCTCGTCCGCTGAGGCTCCAGCCT
TAGAGACTCCTTCCACTGAAACCCCAGCCACAGAGGTTGAAGCTGCCGAA
ATTCCGCCCATTAAGGCTCCGATGACCGAGGTTTCGGTGCCTGACGTTCA
GGCTACAGACATTCCGTCTCCTGAAACAACGACCCCTGAAAGTCCTGCAA
CTGAGGCCCCACCCAAGTCTCCGGCACCCGAGGTCCAGCACGTTGAACCT
CCAGGCACCGAGGCCCCGCCTGTCGAGGCTCCAGTAAGCGAGGCTACGGT
ACCCGGGGGTGCACCCGCTGAGACTCCAGTCACAGAGACTCCGGATCCTG
AGACCCCGATAACGGGGGCTTCAGCTACCGAGATTCCGCCCGCTGAGGCT
CCGACGACCGAGGTTTCAGTGCCTGGTGCTGAGGCCACCGAGACTCCGGC
CCCCGAAACTCCGCCCACTGAGACCCCTTCCACCAAAACCCCGGCCATGG
TGACTCCGCCTGCCGATGCTCCGGCCTCAGAGACTCCATCTGCAGAGGCT
TCATCCGTCGAAGATGAAGTAACTGAGGCCCCGCCGACGATGGCTTCGCC
CGGTGAGACACCAGCCGCAGAGAAATTGGCCACAAAGGCTCCAGCTACGG
AGGCCCCACCCATCGAGTCTCCGGCAACACGCGCTCTTCCCACTGAACCA
CAGCCCGATGAGGCTCCGCCTACTGAGGCTCCGATGAACGAAGCTTCACC
CGCCGAAGACACACCTGCTGCGGTAGATCTTTCGGCAGAACCGAAAGAAA
TGCCTGCTGCGGAGACTGAATCTGAGGGAGAGACGGCGGCACATGGAGAG
AGTGCAGAATCTTCCTCCACTGGGGCTGTGGAAGGCCCACCGGAGACCGG
TTCCGAACTCGATGGGGCTGTGAAGGCGTTGATTGGATCGGCTTCCTCCG
CGCCTTCTGTGGCGGAGGAACAGCTGGCCGATCCTGGGATGGTAGAAGAC
GACGACCAGCAGCAGGATGGTGACAAGAGTGAAGAAACTTCGTCGGAGGC
CGAGCCGGCAGGAGAGCAAGACCCGGCAGGCGCCGACGAGCCCGAGATCG
ACGTGGTCCCGATGGAGGAAAGCTCGTCTTCCAAGGAGATGGTTCCTTCG
GCCGAAGGTGTGCCCAATGACGGCCGTTCGGCAGTGCACCTTTCCCCCGG
ATCTTTGATGATTTGTCTCAGCGTGCTTTCTGTCTGCGTGACGCTGGGTG
TGTTCTTCGCCCACGCCCCACGCTCGTCCTAGGGGCTGTGGAAGGCCCAC
CGGAGACCGGTTCCGAACTCGATGGGGCTGTGAAGGCGTTGATTGGATCG
GCTTCCTCCGCGCCTTCTGTGGCGGAGGAACAGCTGGCCGATCCTGGGAT
GGTAGAAGACGACGACCAGCAGCAGGATGGTGACAAGAGTGAAGAAACTT
CGTCGGAGGCCGAGCCGGCAGGAGAGCAAGACCCGGCAGGCGCCGACGAG
CCCGAGATCGACGTGGTCCCGATGGAGGAAAGCTCGTCTTCCAAGGAGAT
GGTTCCTTCGGCCGAAGGTGTGCCCAATGACGGCCGTTCGGCAGTGCACC
TTTCCCCCGGATCTTTGATGATTTGTCTCAGCGTGCTTTCTGTCTGCGTG
ACGCTGGGTGTGTTCTTCGCCCACGCCCCACGCTCGTCCTAG
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