mRNA_F-serratus_M_contig12.1565.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig12.1565.1
Unique NamemRNA_F-serratus_M_contig12.1565.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig12.1565.1 vs. uniprot
Match: D7FHP2_ECTSI (40S ribosomal protein SA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP2_ECTSI)

HSP 1 Score: 507 bits (1305), Expect = 5.820e-178
Identity = 275/342 (80.41%), Postives = 285/342 (83.33%), Query Frame = 1 
Query:    1 REEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAA---VSMEYQAPPAQAAGLGGGWDADPAAGGEVIGEPPVPEVQ---EAIPVEAGVPMXXXXXXXXXXXXXXXXAPQQPA-ADDGGWGDASGGAAGGGW 1005
            +EEDI KML+AQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDR   WDVPVDLFFYREPEELEKAEEAQAPFQ+P A AA GWGA+P+   AAPTPMEGFAAVDPAA   V +EYQAPP QAA +GGGWDA PA G E     PV +VQ   EA+PV+AGVP                   Q P  A  GGWG A    AGGGW
Sbjct:   13 KEEDIHKMLAAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPFQEPAAAAASGWGADPMAGGAAPTPMEGFAAVDPAAAAPVPVEYQAPP-QAAAMGGGWDAAPATGAEQ--GMPVEQVQPVAEAMPVDAGVPPAAGGGWDAQQAQAPVQQAQAPQQAQGGGWGGAPA-QAGGGW 350
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BLAST of mRNA_F-serratus_M_contig12.1565.1 vs. uniprot
Match: A0A7S4DAK2_HETAK (40S ribosomal protein SA n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAK2_HETAK)

HSP 1 Score: 384 bits (987), Expect = 6.800e-130
Identity = 201/268 (75.00%), Postives = 223/268 (83.21%), Query Frame = 1 
Query:    1 REEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQAAGLGGGWDADP 804
            +EEDIQKML+ Q HIGTRNS+++M DYIW RRQDG+H++N+GKTWEK+VLAARIIVAIENP+DVVAISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPRLL+ITDPR D+QAVKEASYVNVPVIAFCDSDSPL NVDVAIP+NNKGKLSIGLLYWLLAREVLRMRGTI R  PWDVPVDLFFYR+PEELEKA+EAQA   + Q  A  GWGA P   +AAP      A + P    M+Y AP A       G++A P
Sbjct:   37 KEEDIQKMLAGQCHIGTRNSENKMADYIWTRRQDGVHVMNLGKTWEKIVLAARIIVAIENPEDVVAISARPYGQRAVLKFAQYTGANSIAGRFTPGTFTNQITKQFREPRLLVITDPRTDSQAVKEASYVNVPVIAFCDSDSPLPNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTISRDAPWDVPVDLFFYRDPEELEKADEAQAAAYEEQVPA--GWGAAP--EAAAPA-----AEMAP----MDYVAPDAXXXXAAAGFEAPP 291
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BLAST of mRNA_F-serratus_M_contig12.1565.1 vs. uniprot
Match: A0A836CJ71_9STRA (40S ribosomal protein SA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ71_9STRA)

HSP 1 Score: 380 bits (975), Expect = 2.410e-128
Identity = 197/252 (78.17%), Postives = 212/252 (84.13%), Query Frame = 1 
Query:    1 REEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAP----TPMEGFAAVDPAAVSM 744
            +EEDIQKMLSAQ HIGTRNSD QM+DYIWRRR DGIHILNIGKTWEKLVLAARII AIENPQDV+AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPRLLIITDPR DAQAVKE+SYVNVPVIAFCDSDSPL  VDVAIP+NNKGKLSIGLLYW+LAREVLR+RGT+ R  PWDVPVDLFF+REPEELEK E  Q  F++P A  A GW A   + +AA      P +   +V PA   M
Sbjct:   13 KEEDIQKMLSAQAHIGTRNSDDQMKDYIWRRRHDGIHILNIGKTWEKLVLAARIIAAIENPQDVIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFREPRLLIITDPRTDAQAVKESSYVNVPVIAFCDSDSPLNYVDVAIPANNKGKLSIGLLYWMLAREVLRLRGTVPRDAPWDVPVDLFFHREPEELEKTEAEQ--FEEPAAPTA-GWDATAGMGAAAAGDYAVPTQPLTSVTPAEAEM 261
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BLAST of mRNA_F-serratus_M_contig12.1565.1 vs. uniprot
Match: F0Y9V2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9V2_AURAN)

HSP 1 Score: 373 bits (957), Expect = 4.310e-127
Identity = 177/208 (85.10%), Postives = 197/208 (94.71%), Query Frame = 1 
Query:    1 REEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQA 624
            +EEDIQKMLSAQ HIGTRNSD  M++YIWRRRQDGIHI+N+GKTWEKL+LAAR++ AIENPQD++AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQF+EPR+L+ITDPR D+QAVKEASYVN+PVIAFCDSDSP Q+VDVAIPSNNKGKLSIGLLYWLLARE+LRMRGT+ R  PWDVPVDLFFYR+PEELEKA+EAQA
Sbjct:    5 KEEDIQKMLSAQCHIGTRNSDHMMEEYIWRRRQDGIHIINVGKTWEKLMLAARVLTAIENPQDIIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFKEPRILVITDPRTDSQAVKEASYVNLPVIAFCDSDSPCQHVDVAIPSNNKGKLSIGLLYWLLAREMLRMRGTVARHAPWDVPVDLFFYRDPEELEKADEAQA 212
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BLAST of mRNA_F-serratus_M_contig12.1565.1 vs. uniprot
Match: A0A8J2SYU6_9STRA (40S ribosomal protein SA n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYU6_9STRA)

HSP 1 Score: 377 bits (968), Expect = 1.220e-126
Identity = 200/282 (70.92%), Postives = 223/282 (79.08%), Query Frame = 1 
Query:    1 REEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQA-----------------------PFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQAAG 777
            +EEDIQKML+AQ HIGTRNSD  M++YIWRRRQDG+HI+NIGKTWEKL+LAAR++ AIENPQDV+AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPR+L+ITDPR D+QAV EASYVN+PVIAFCDSDSPLQ+VDVAIPSNNKGKLSIGLLYWLLAREVLRMRGT+ R  PWDVPVDLFFYR+PEELEKAEEAQA                       P+ DP A+A  G+   P  +        GFAA  PAA   ++  P AQAAG
Sbjct:   82 KEEDIQKMLAAQCHIGTRNSDHMMEEYIWRRRQDGVHIINIGKTWEKLMLAARVLTAIENPQDVIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFREPRILVITDPRTDSQAVAEASYVNLPVIAFCDSDSPLQHVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTVSRLAPWDVPVDLFFYRDPEELEKAEEAQAFAAEQEQAQTWNASAGEAAPKEQPYSDPNAMA--GFEQAPAATG-------GFAA--PAAPEQQWD-PNAQAAG 351
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BLAST of mRNA_F-serratus_M_contig12.1565.1 vs. uniprot
Match: A0A1V9ZU98_9STRA (40S ribosomal protein SA n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZU98_9STRA)

HSP 1 Score: 374 bits (960), Expect = 1.260e-126
Identity = 192/267 (71.91%), Postives = 218/267 (81.65%), Query Frame = 1 
Query:    1 REEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQAAGLGGGWDAD 801
            REEDIQKML+A VHIGTRN+D+QM DYIWRRR DGIHI+N+GKTWEKL+LAA+IIVA+ENP DV+AISARPYGQRAVLKFAQYTGC +IAGRFTPGTFTNQITKQFREPRLLIITDPR DAQ V+E++YVNVPVIAFCDSDSPL+ VDVAIP+NNKGKLSIGLLYWLL+REVLR+RGTI R  PWDV VDLFFYR+PEELEKAEEAQ    D +++A  GW  E + + AA             A ++    P A+    GG W AD
Sbjct:    5 REEDIQKMLAAMVHIGTRNADAQMGDYIWRRRNDGIHIINVGKTWEKLMLAAKIIVAVENPADVIAISARPYGQRAVLKFAQYTGCQAIAGRFTPGTFTNQITKQFREPRLLIITDPRTDAQPVRESAYVNVPVIAFCDSDSPLRYVDVAIPANNKGKLSIGLLYWLLSREVLRLRGTISRALPWDVAVDLFFYRDPEELEKAEEAQTGAAD-ESMARAGWTNEAVAAEAATE-----------APTLYTAEPTAEWGTAGGEWGAD 259
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BLAST of mRNA_F-serratus_M_contig12.1565.1 vs. uniprot
Match: A0A0P1B4R0_PLAHL (40S ribosomal protein SA n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B4R0_PLAHL)

HSP 1 Score: 370 bits (949), Expect = 6.990e-125
Identity = 190/258 (73.64%), Postives = 218/258 (84.50%), Query Frame = 1 
Query:    1 REEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQAA 774
            REEDI+ ML+AQVHIGTRN+DS+M DYIWRRR DGIH++N+GKTWEKL+LAAR+IVA+ENP+DV+AISARPYGQRAVLKFAQ+TGC +IA RFTPGTFTNQITKQFREPRLLIITDPR D+QAV+E+S+VNVPVIA CDSDSPLQ VDVAIP+NNKGKLSIGLLYWLLAREVLR+RGTI R  PWDV VDLF YR+PEEL+KAEEAQA   D ++ A PGWG       A+P+P+E      PA  + E   P A AA
Sbjct:    8 REEDIKMMLAAQVHIGTRNADSKMADYIWRRRNDGIHVINVGKTWEKLMLAARVIVAVENPEDVIAISARPYGQRAVLKFAQHTGCNAIASRFTPGTFTNQITKQFREPRLLIITDPRTDSQAVRESSFVNVPVIALCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQAIAGD-ESQARPGWG------DASPSPVE------PALYAAEPSVPAATAA 252
[Close]
BLAST of mRNA_F-serratus_M_contig12.1565.1 vs. uniprot
Match: K3WLH6_GLOUD (40S ribosomal protein SA n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLH6_GLOUD)

HSP 1 Score: 370 bits (949), Expect = 1.550e-124
Identity = 199/281 (70.82%), Postives = 223/281 (79.36%), Query Frame = 1 
Query:    1 REEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVD----------------PAAVSMEYQAPPAQAAGLGGGWD 795
            REEDI+ ML+AQVHIGTRN+DS+M DYIWRRR DGIHI+NIG+TWEKL+LAAR+IVAIENP DV+AISARPYGQRAVLKFAQYTG  +IAGRFTPGTFTNQITKQFREPRLLIITDPR D+QAV+E+++VNVPVIAFCDSDSPLQ VDVAIPSNNKGKLSIGLLYWLLAREVLR+RGTI R  PWDV VDLF YR+PEEL+KAEEAQ+   D +AVA  GWG E    +A P      AAV+                 AA +  + AP   AA  G GWD
Sbjct:   32 REEDIKLMLAAQVHIGTRNADSKMGDYIWRRRNDGIHIINIGQTWEKLMLAARVIVAIENPADVIAISARPYGQRAVLKFAQYTGAAAIAGRFTPGTFTNQITKQFREPRLLIITDPRTDSQAVRESAFVNVPVIAFCDSDSPLQYVDVAIPSNNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQSGAAD-EAVARAGWG-ETAEVAAEPALFTAEAAVEWTSTTAXXXXXXEWSGDAAAAGSWDAP---AATTGSGWD 307
[Close]
BLAST of mRNA_F-serratus_M_contig12.1565.1 vs. uniprot
Match: A0A485LRJ6_9STRA (40S ribosomal protein SA n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LRJ6_9STRA)

HSP 1 Score: 368 bits (944), Expect = 3.250e-124
Identity = 195/272 (71.69%), Postives = 221/272 (81.25%), Query Frame = 1 
Query:    1 REEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQAAGLGGGWDADPAAGG 816
            REEDIQKML+A VHIGTRN+DSQM DYIWRRR DGIHI+N+G+TWEKL+LAA++IVA+ENP DV+AISARPYGQRAVLKFAQYTGC +IAGRFTPGTFTNQITKQFREPRLLIITDPR D+Q V+E++YVNVPVIAFCD+DSPL+ VDVAIP+NNKGKLSIGLLYWLL+REVLR+RGTI R  PW+V VDLFFYR+PEEL KAEEAQ    D   VA  GW  E   ++AA T  E      P   + E   P A+    GG W AD AAGG
Sbjct:    6 REEDIQKMLAAMVHIGTRNADSQMGDYIWRRRNDGIHIINVGQTWEKLMLAAKVIVAVENPADVIAISARPYGQRAVLKFAQYTGCQAIAGRFTPGTFTNQITKQFREPRLLIITDPRTDSQPVRESAYVNVPVIAFCDTDSPLRYVDVAIPANNKGKLSIGLLYWLLSREVLRLRGTISRALPWEVAVDLFFYRDPEELAKAEEAQTGAVDE--VARAGWTNE---AAAAETATE-----QPNLYTPE---PAAEWGTAGGEWGADAAAGG 264
[Close]
BLAST of mRNA_F-serratus_M_contig12.1565.1 vs. uniprot
Match: A0A5D6XMB2_9STRA (40S ribosomal protein SA n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMB2_9STRA)

HSP 1 Score: 365 bits (937), Expect = 3.750e-123
Identity = 199/279 (71.33%), Postives = 225/279 (80.65%), Query Frame = 1 
Query:    1 REEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQAA--------GLGGGWDADPAAG 813
            REEDI+ ML+AQVHIGTRN+DS+M DYIWRRR DG++I+NIGKTWEKL+LAAR+IVAIENP DV+AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPRLLIITDPR D+Q+V+E+S+VNVPVIAFCDSDSPLQ VDVAIP+NNKGKLSIGLLYWLLAREVLR+RGTI R  PWDV VDLF YR+PEEL+KAEEAQ+   + +A A  GWG     + A P P     AV  A  ++E+ A  A AA           G WDA PAAG
Sbjct:    5 REEDIKLMLAAQVHIGTRNADSKMADYIWRRRNDGVNIINIGKTWEKLMLAARVIVAIENPSDVIAISARPYGQRAVLKFAQYTGSSSIAGRFTPGTFTNQITKQFREPRLLIITDPRTDSQSVRESSFVNVPVIAFCDSDSPLQYVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQSGAAE-EAQARAGWG---DATEAQPEP-----AVFAAESAVEWTAGAAAAAPXXXXXXXXXAGSWDA-PAAG 273
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig12.1565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHP2_ECTSI5.820e-17880.4140S ribosomal protein SA n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S4DAK2_HETAK6.800e-13075.0040S ribosomal protein SA n=2 Tax=Heterosigma akash... [more]
A0A836CJ71_9STRA2.410e-12878.1740S ribosomal protein SA n=1 Tax=Tribonema minus T... [more]
F0Y9V2_AURAN4.310e-12785.10Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8J2SYU6_9STRA1.220e-12670.9240S ribosomal protein SA n=1 Tax=Pelagomonas calce... [more]
A0A1V9ZU98_9STRA1.260e-12671.9140S ribosomal protein SA n=3 Tax=Saprolegniaceae T... [more]
A0A0P1B4R0_PLAHL6.990e-12573.6440S ribosomal protein SA n=1 Tax=Plasmopara halste... [more]
K3WLH6_GLOUD1.550e-12470.8240S ribosomal protein SA n=1 Tax=Globisporangium u... [more]
A0A485LRJ6_9STRA3.250e-12471.6940S ribosomal protein SA n=2 Tax=Aphanomyces TaxID... [more]
A0A5D6XMB2_9STRA3.750e-12371.3340S ribosomal protein SA n=1 Tax=Pythium brassicum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig12contigF-serratus_M_contig12:1112712..1114940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score494.6
Seed ortholog evalue3.6e-137
Seed eggNOG ortholog2880.D7FHP2
Preferred nameRPS0
KEGG koko:K02998
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030686,GO:0031123,GO:0031125,GO:0031503,GO:0032991,GO:0033036,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0042255,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043628,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0065003,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097064,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0052@1,KOG0830@2759
Ec32 ortholog descriptionRibosomal protein S2, flavodoxin-like domain
Ec32 orthologEc-07_006200.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons5
Model size1119
Cds size987
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.6430175-UTR-F-serratus_M_contig12:1112711..11128221622929109.6430175-UTR-F-serratus_M_contig12:1112711..1112822Fucus serratus maleUTRF-serratus_M_contig12 1112712..1112822 -
1690962709.0989926-UTR-F-serratus_M_contig12:1112711..11128221690962709.0989926-UTR-F-serratus_M_contig12:1112711..1112822Fucus serratus maleUTRF-serratus_M_contig12 1112712..1112822 -
1622929109.7097156-UTR-F-serratus_M_contig12:1114919..11149401622929109.7097156-UTR-F-serratus_M_contig12:1114919..1114940Fucus serratus maleUTRF-serratus_M_contig12 1114920..1114940 -
1690962709.1578405-UTR-F-serratus_M_contig12:1114919..11149401690962709.1578405-UTR-F-serratus_M_contig12:1114919..1114940Fucus serratus maleUTRF-serratus_M_contig12 1114920..1114940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.6533809-CDS-F-serratus_M_contig12:1112822..11132841622929109.6533809-CDS-F-serratus_M_contig12:1112822..1113284Fucus serratus maleCDSF-serratus_M_contig12 1112823..1113284 -
1690962709.109876-CDS-F-serratus_M_contig12:1112822..11132841690962709.109876-CDS-F-serratus_M_contig12:1112822..1113284Fucus serratus maleCDSF-serratus_M_contig12 1112823..1113284 -
1622929109.6656747-CDS-F-serratus_M_contig12:1113524..11137041622929109.6656747-CDS-F-serratus_M_contig12:1113524..1113704Fucus serratus maleCDSF-serratus_M_contig12 1113525..1113704 -
1690962709.1218958-CDS-F-serratus_M_contig12:1113524..11137041690962709.1218958-CDS-F-serratus_M_contig12:1113524..1113704Fucus serratus maleCDSF-serratus_M_contig12 1113525..1113704 -
1622929109.677314-CDS-F-serratus_M_contig12:1114031..11142111622929109.677314-CDS-F-serratus_M_contig12:1114031..1114211Fucus serratus maleCDSF-serratus_M_contig12 1114032..1114211 -
1690962709.130241-CDS-F-serratus_M_contig12:1114031..11142111690962709.130241-CDS-F-serratus_M_contig12:1114031..1114211Fucus serratus maleCDSF-serratus_M_contig12 1114032..1114211 -
1622929109.686942-CDS-F-serratus_M_contig12:1114454..11145411622929109.686942-CDS-F-serratus_M_contig12:1114454..1114541Fucus serratus maleCDSF-serratus_M_contig12 1114455..1114541 -
1690962709.1384351-CDS-F-serratus_M_contig12:1114454..11145411690962709.1384351-CDS-F-serratus_M_contig12:1114454..1114541Fucus serratus maleCDSF-serratus_M_contig12 1114455..1114541 -
1622929109.6982257-CDS-F-serratus_M_contig12:1114841..11149191622929109.6982257-CDS-F-serratus_M_contig12:1114841..1114919Fucus serratus maleCDSF-serratus_M_contig12 1114842..1114919 -
1690962709.1484582-CDS-F-serratus_M_contig12:1114841..11149191690962709.1484582-CDS-F-serratus_M_contig12:1114841..1114919Fucus serratus maleCDSF-serratus_M_contig12 1114842..1114919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig12.1565.1prot_F-serratus_M_contig12.1565.1Fucus serratus malepolypeptideF-serratus_M_contig12 1112823..1114919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig12.1565.1

>prot_F-serratus_M_contig12.1565.1 ID=prot_F-serratus_M_contig12.1565.1|Name=mRNA_F-serratus_M_contig12.1565.1|organism=Fucus serratus male|type=polypeptide|length=329bp
MLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVA
IENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFR
EPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKG
KLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQ
APFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQA
AGLGGGWDADPAAGGEVIGEPPVPEVQEAIPVEAGVPMEAPVSADAGAGG
GWDAAPQQPAADDGGWGDASGGAAGGGW*
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mRNA from alignment at F-serratus_M_contig12:1112712..1114940-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig12.1565.1 ID=mRNA_F-serratus_M_contig12.1565.1|Name=mRNA_F-serratus_M_contig12.1565.1|organism=Fucus serratus male|type=mRNA|length=2229bp|location=Sequence derived from alignment at F-serratus_M_contig12:1112712..1114940- (Fucus serratus male)
AGGGAGGAAGACATCCAGAAGATGCTGTCCGCCCAGGTGCACATCGGCAC
CCGCAACAGCGACAGCCAGATGCAGGACTACATCTGGCGACGCCGCCAGG
TCAGGAAGCTGTTAATTTTGTGGTACTGCTTGACCCTGGCAGCTCTCGTC
ATAGAGTAATTTATGTGCTTGTTTGACCGCGTAAATCAAATCGTCCTGGC
CGTATCGTGTCTCGTCGTCTTCAACCACCTCCCTCATCCGATTGTTTGTT
AGTTGGTTGCGTTTTTTTACCACAACTCCAGCGGCTCTTGTCCCATTATG
GCTCTTCGGTGACGGGAGCCCGACTCACTACAGTAATTACCGTGCAGATT
GATGCTCATGCGTGGTGGATAACCGACGATTTCTTGAATGTTCCTCCAGG
ATGGCATCCACATCCTTAACATCGGAAAGACGTGGGAGAAGCTCGTGCTG
GCCGCCCGCATTATCGTGGCCATCGAGAATCCCCAGGTGGGCTTTCGTTG
TTGCATGATTTCGATCGCTGAGGCTGCTTAAGAATCACATAGATATAAAT
AATTTATTCATAGACATGCCCGCAAGATCACGCCGGCCGCCCTTAGCGTC
CTCCACTACGGTAGAGAGACGGTCTTTGCTATCGTGCGATAATTTCCACC
CAACGCTGTTTGGCCTCTTCCGTTCACTCACTCCCCTTGTGTACCTACCG
CCTCCGCACCCGAACGCGGTCACTTTCAGGACGTGGTGGCGATCTCTGCC
CGCCCCTATGGCCAGCGCGCTGTACTTAAGTTCGCCCAGTACACGGGCTG
CCTGTCCATCGCCGGCCGCTTCACTCCCGGAACGTTCACCAACCAGATCA
CCAAGCAGTTCCGCGAGCCTCGCCTTCTCATCATCACGGACCCGCGGCCC
GACGCCCAGGTGCTCATGCCCAGCGCACTTCACGTAGCAAGATAGTATAT
CGTCAGATTATGAGCCTCCCAAAGTTGATAATTGCAAAGGATCGCGAACG
GGTGAACCTCACGCTCTCGACAGGGGTATATTACGGTGTGTGAAGAAAAT
CTGGCTTTTCTTTTCCGACCAAGACACCTACGCCTTGGATGACTTTTTGA
AAGAAGACAGTTGCAAGAAATGACCGCGAGGTGCCGACGAATGGCTCGAG
ATCGTTCACCGAGTAAATTTGTTTTCATTGGAGCATTTCGCGTGTCAACC
TTTCTTCCGCTTCTCGGTCATTTTCCTCGTATACAGGCGGTCAAGGAGGC
GTCCTACGTTAACGTTCCGGTGATCGCCTTCTGTGACAGCGACTCGCCCC
TCCAGAATGTTGACGTCGCGATTCCCTCTAACAACAAGGGGAAGCTTTCC
ATCGGCCTCCTTTACTGGCTGCTCGCGAGGGAAGTGCTGCGCATGCGTGG
CACCATTGACCGCCAGGTACCACCTCTGACTTGCAGCCCTCTATCTGCCG
CGGCGCGCCGTCCGGTCGTGTTGGGCCTGATGTGCGCGTGCTTCCTCTCG
CGAGTTGTTTTTTTTATGGCAGATCTCAGCTGACTTTTTCGAACAAGAGG
AGGGTGCTAAGTAAGTCCTTACCCCCCCCAACTCTGCGCTGTTCTATTTC
GTGGTAATCTTGTGCCCTTCTCTGCATTGCTCCGATTGTTGTGGTACGCT
CTTTAGCAACCCTGGGATGTACCGGTGGACCTCTTCTTCTACCGAGAGCC
GGAAGAGCTCGAAAAGGCGGAGGAGGCCCAGGCGCCCTTCCAGGACCCTC
AGGCCGTCGCAGCTCCCGGCTGGGGAGCCGAACCCATCGTCTCAAGCGCT
GCTCCCACGCCGATGGAGGGCTTTGCGGCGGTGGACCCGGCCGCTGTGTC
CATGGAGTACCAGGCGCCCCCGGCCCAGGCGGCTGGGCTTGGCGGAGGCT
GGGACGCCGACCCAGCGGCGGGCGGTGAGGTTATCGGGGAGCCGCCGGTG
CCAGAAGTGCAGGAGGCAATCCCAGTGGAGGCCGGAGTGCCGATGGAGGC
CCCCGTGTCGGCGGATGCTGGCGCCGGAGGAGGGTGGGACGCCGCCCCCC
AACAGCCGGCCGCTGACGACGGCGGCTGGGGTGACGCGAGCGGGGGCGCA
GCTGGCGGAGGGTGGTGATTACGCCTTTCGAGTCACGTCATCGCAAGTCG
TCTCCACCGGTCTCGTGTCAACCCCGTCAGACAACTGTTGCGTGTAGGCT
TTCATTTAGCTGTCGGGCATAGCCTCCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig12:1112712..1114940-

>mRNA_F-serratus_M_contig12.1565.1 ID=mRNA_F-serratus_M_contig12.1565.1|Name=mRNA_F-serratus_M_contig12.1565.1|organism=Fucus serratus male|type=CDS|length=1974bp|location=Sequence derived from alignment at F-serratus_M_contig12:1112712..1114940- (Fucus serratus male)
ATGCTGTCCGCCCAGGTGCACATCGGCACCCGCAACAGCGACAGCCAGAT
GCAGGACTACATCTGGCGACGCCGCCAGATGCTGTCCGCCCAGGTGCACA
TCGGCACCCGCAACAGCGACAGCCAGATGCAGGACTACATCTGGCGACGC
CGCCAGGATGGCATCCACATCCTTAACATCGGAAAGACGTGGGAGAAGCT
CGTGCTGGCCGCCCGCATTATCGTGGCCATCGAGAATCCCCAGGATGGCA
TCCACATCCTTAACATCGGAAAGACGTGGGAGAAGCTCGTGCTGGCCGCC
CGCATTATCGTGGCCATCGAGAATCCCCAGGACGTGGTGGCGATCTCTGC
CCGCCCCTATGGCCAGCGCGCTGTACTTAAGTTCGCCCAGTACACGGGCT
GCCTGTCCATCGCCGGCCGCTTCACTCCCGGAACGTTCACCAACCAGATC
ACCAAGCAGTTCCGCGAGCCTCGCCTTCTCATCATCACGGACCCGCGGCC
CGACGCCCAGGACGTGGTGGCGATCTCTGCCCGCCCCTATGGCCAGCGCG
CTGTACTTAAGTTCGCCCAGTACACGGGCTGCCTGTCCATCGCCGGCCGC
TTCACTCCCGGAACGTTCACCAACCAGATCACCAAGCAGTTCCGCGAGCC
TCGCCTTCTCATCATCACGGACCCGCGGCCCGACGCCCAGGCGGTCAAGG
AGGCGTCCTACGTTAACGTTCCGGTGATCGCCTTCTGTGACAGCGACTCG
CCCCTCCAGAATGTTGACGTCGCGATTCCCTCTAACAACAAGGGGAAGCT
TTCCATCGGCCTCCTTTACTGGCTGCTCGCGAGGGAAGTGCTGCGCATGC
GTGGCACCATTGACCGCCAGGCGGTCAAGGAGGCGTCCTACGTTAACGTT
CCGGTGATCGCCTTCTGTGACAGCGACTCGCCCCTCCAGAATGTTGACGT
CGCGATTCCCTCTAACAACAAGGGGAAGCTTTCCATCGGCCTCCTTTACT
GGCTGCTCGCGAGGGAAGTGCTGCGCATGCGTGGCACCATTGACCGCCAG
CAACCCTGGGATGTACCGGTGGACCTCTTCTTCTACCGAGAGCCGGAAGA
GCTCGAAAAGGCGGAGGAGGCCCAGGCGCCCTTCCAGGACCCTCAGGCCG
TCGCAGCTCCCGGCTGGGGAGCCGAACCCATCGTCTCAAGCGCTGCTCCC
ACGCCGATGGAGGGCTTTGCGGCGGTGGACCCGGCCGCTGTGTCCATGGA
GTACCAGGCGCCCCCGGCCCAGGCGGCTGGGCTTGGCGGAGGCTGGGACG
CCGACCCAGCGGCGGGCGGTGAGGTTATCGGGGAGCCGCCGGTGCCAGAA
GTGCAGGAGGCAATCCCAGTGGAGGCCGGAGTGCCGATGGAGGCCCCCGT
GTCGGCGGATGCTGGCGCCGGAGGAGGGTGGGACGCCGCCCCCCAACAGC
CGGCCGCTGACGACGGCGGCTGGGGTGACGCGAGCGGGGGCGCAGCTGGC
GGAGGGTGGTGACAACCCTGGGATGTACCGGTGGACCTCTTCTTCTACCG
AGAGCCGGAAGAGCTCGAAAAGGCGGAGGAGGCCCAGGCGCCCTTCCAGG
ACCCTCAGGCCGTCGCAGCTCCCGGCTGGGGAGCCGAACCCATCGTCTCA
AGCGCTGCTCCCACGCCGATGGAGGGCTTTGCGGCGGTGGACCCGGCCGC
TGTGTCCATGGAGTACCAGGCGCCCCCGGCCCAGGCGGCTGGGCTTGGCG
GAGGCTGGGACGCCGACCCAGCGGCGGGCGGTGAGGTTATCGGGGAGCCG
CCGGTGCCAGAAGTGCAGGAGGCAATCCCAGTGGAGGCCGGAGTGCCGAT
GGAGGCCCCCGTGTCGGCGGATGCTGGCGCCGGAGGAGGGTGGGACGCCG
CCCCCCAACAGCCGGCCGCTGACGACGGCGGCTGGGGTGACGCGAGCGGG
GGCGCAGCTGGCGGAGGGTGGTGA
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