mRNA_F-serratus_M_contig12.1562.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig12.1562.1
Unique NamemRNA_F-serratus_M_contig12.1562.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig12.1562.1 vs. uniprot
Match: D8LFF2_ECTSI (Ribosomal_L16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFF2_ECTSI)

HSP 1 Score: 405 bits (1041), Expect = 2.280e-138
Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLAKAIL 621
            PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVD FPMV HLVSDEKEQLTSEALEAARVSANKYM K+AGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKP GTTARV+IGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKY REEYV+GRKEGWLQKDGNSVKYIAQHGPLAKAIL
Sbjct:    5 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVSDEKEQLTSEALEAARVSANKYMAKFAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPQGTTARVAIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREEYVRGRKEGWLQKDGNSVKYIAQHGPLAKAIL 211
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BLAST of mRNA_F-serratus_M_contig12.1562.1 vs. uniprot
Match: A0A7S2Y043_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y043_9STRA)

HSP 1 Score: 355 bits (912), Expect = 1.940e-118
Identity = 168/202 (83.17%), Postives = 186/202 (92.08%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPL 606
            PARCYRFQKNKPFIKSRYCRGVPDPKIRIY+VG KKA VD FP V HLVSDEKEQLTSEALEAARV+ NKY+ KYAGK+ +H+RIRAHP+HV+RINKMLSCAGADRLQTGMRHAYGKP GT+ARV+IGQ+++S+R +DNH   AVEALRRAKFKFPGRQKIL+SNKWGFTK+ REEYV+GRKEGWLQ DGNSVKYIA HGPL
Sbjct:   33 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYDVGQKKAGVDYFPCVVHLVSDEKEQLTSEALEAARVACNKYLTKYAGKEAYHIRIRAHPYHVVRINKMLSCAGADRLQTGMRHAYGKPQGTSARVAIGQVLMSVRCRDNHAEIAVEALRRAKFKFPGRQKILRSNKWGFTKWEREEYVKGRKEGWLQADGNSVKYIASHGPL 234
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BLAST of mRNA_F-serratus_M_contig12.1562.1 vs. uniprot
Match: A0A7R9U1D6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D6_9STRA)

HSP 1 Score: 341 bits (874), Expect = 1.250e-112
Identity = 162/205 (79.02%), Postives = 180/205 (87.80%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLAKA 615
            PARCYRFQKNKP+IKSRYCRGVPDPKIRIYE GNK+  VD FP V HLVSDEKEQLTSEALEAARV ANKYM KYAGKD FH+R+R HPFH++RINKMLSCAGADRLQTGMRHAYGKP G +ARV+IGQII+SIR  D  +  A EALRRAKFKFPGRQKIL+SNKWGFT + R EYVQGR+EGW++KDGN  KY+++HGPLA A
Sbjct:   33 PARCYRFQKNKPYIKSRYCRGVPDPKIRIYECGNKRMGVDHFPYVIHLVSDEKEQLTSEALEAARVCANKYMVKYAGKDAFHLRVRCHPFHIIRINKMLSCAGADRLQTGMRHAYGKPMGVSARVAIGQIIMSIRCADKIKHLAREALRRAKFKFPGRQKILESNKWGFTPFDRSEYVQGRQEGWIEKDGNQAKYVSEHGPLAAA 237
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BLAST of mRNA_F-serratus_M_contig12.1562.1 vs. uniprot
Match: A0A835YXV3_9STRA (Ribosomal protein L10e/L16 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV3_9STRA)

HSP 1 Score: 329 bits (844), Expect = 1.550e-108
Identity = 157/204 (76.96%), Postives = 180/204 (88.24%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLAK 612
            PARC RFQKNKPFIKSRYCRGVPDPKIRI++ GNK ASVD+FP V HLVSDEKEQLTS ALEAARV+ANKY+ K+ GKD FH+RIRAHPFHV+R NKMLSCAGADRL +GMRH+YGKP  T ARVSIGQI++S+R+KD +  + +EALRRAKFKFPGRQKIL+S KWG TK+SRE+YV+GR+EGWL  DGN VKYI+QHGPL K
Sbjct:    5 PARCIRFQKNKPFIKSRYCRGVPDPKIRIFDCGNKAASVDLFPFVAHLVSDEKEQLTSNALEAARVTANKYLVKFGGKDAFHLRIRAHPFHVIRQNKMLSCAGADRLSSGMRHSYGKPTETAARVSIGQILMSVRAKDANGASCIEALRRAKFKFPGRQKILRSEKWGLTKWSREDYVRGRQEGWLVHDGNGVKYISQHGPLNK 208
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BLAST of mRNA_F-serratus_M_contig12.1562.1 vs. uniprot
Match: A0A5D6Y3Y7_9STRA (Ribosomal_L16 domain-containing protein n=4 Tax=Pythium TaxID=4797 RepID=A0A5D6Y3Y7_9STRA)

HSP 1 Score: 326 bits (835), Expect = 3.810e-107
Identity = 158/203 (77.83%), Postives = 172/203 (84.73%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLA 609
            PA+CYRFQ  KPFIKSR+CRGVPDPKIRIY+VGNKKASVD FP V HLVSDEKEQL+SEALEAAR++AN+Y+ KYAGKDNFHMRIR HPF VLRINKMLSCAGADRLQTGMRHAYGKP G  ARV+IGQ IIS+RSKD +    VEALRRAKFKFPGRQK+L S KWGFTKY RE Y Q R +G L  DGN  KY+  HGPLA
Sbjct:    5 PAKCYRFQNKKPFIKSRFCRGVPDPKIRIYDVGNKKASVDTFPFVAHLVSDEKEQLSSEALEAARIAANRYLSKYAGKDNFHMRIRCHPFQVLRINKMLSCAGADRLQTGMRHAYGKPAGVAARVAIGQPIISVRSKDQYGAAVVEALRRAKFKFPGRQKVLGSKKWGFTKYEREVYAQMRADGSLALDGNHEKYMPNHGPLA 207
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BLAST of mRNA_F-serratus_M_contig12.1562.1 vs. uniprot
Match: M4BZN7_HYAAE (Ribosomal_L16 domain-containing protein n=174 Tax=Oomycota TaxID=4762 RepID=M4BZN7_HYAAE)

HSP 1 Score: 323 bits (829), Expect = 2.580e-106
Identity = 158/202 (78.22%), Postives = 170/202 (84.16%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPL 606
            PA+CYRFQ  KPFIKSRYCRGVPDPKIRIY+VGNKKASVD FP V HLVSDEKEQL+SEALEAAR++AN+Y+ KY GKDNFHMRIR HPF VLRINKMLSCAGADRLQTGMRHAYGKP G  ARVSIGQ IIS+RSKD+  P+ VEALRRAKFKFPGRQK+L S KWGFTKY RE Y + R  G L  DGN  KY   HGPL
Sbjct:    5 PAKCYRFQNKKPFIKSRYCRGVPDPKIRIYDVGNKKASVDTFPFVAHLVSDEKEQLSSEALEAARIAANRYLTKYCGKDNFHMRIRCHPFQVLRINKMLSCAGADRLQTGMRHAYGKPAGVAARVSIGQPIISVRSKDSFGPSVVEALRRAKFKFPGRQKVLGSKKWGFTKYERELYAEMRANGSLAVDGNHEKYKPNHGPL 206
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BLAST of mRNA_F-serratus_M_contig12.1562.1 vs. uniprot
Match: F0WNC8_9STRA (60S ribosomal protein L10 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WNC8_9STRA)

HSP 1 Score: 322 bits (825), Expect = 1.040e-105
Identity = 156/202 (77.23%), Postives = 172/202 (85.15%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPL 606
            PA+CYRFQ  KPFI+SRYCRGVPD KIRIY+VGNKKASVD FP V HLVSDEKEQL++EALEAAR++AN+Y+ KY GKDNFHMRIR HPF VLRINKMLSCAGADRLQTGMRHAYGKP GT ARV+IGQ IIS+R+KDN  P  VEALRRAKFKFPGRQK+L S KWGFTKY REEY + R +G L  DGN  KY+  HGPL
Sbjct:    5 PAKCYRFQNKKPFIRSRYCRGVPDSKIRIYDVGNKKASVDAFPYVAHLVSDEKEQLSAEALEAARIAANRYLVKYCGKDNFHMRIRCHPFQVLRINKMLSCAGADRLQTGMRHAYGKPAGTAARVAIGQPIISVRTKDNFGPACVEALRRAKFKFPGRQKVLGSKKWGFTKYEREEYAKLRADGTLIVDGNHEKYMPLHGPL 206
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BLAST of mRNA_F-serratus_M_contig12.1562.1 vs. uniprot
Match: A0A6G0WLK8_9STRA (Ribosomal_L16 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLK8_9STRA)

HSP 1 Score: 322 bits (824), Expect = 1.880e-105
Identity = 156/204 (76.47%), Postives = 171/204 (83.82%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLAK 612
            PA+CYRFQ  KPFIKSRYCRGVPDPKIRIY++GNKKASVD FP V HLVSDEKEQL+SEALEAAR+SAN+Y+ K+ GKDNFHMRIR HPF VLRINKMLSCAGADRLQTGMRHAYGKP G  ARV+IGQ IIS+RSKD+  P  VEALRRAKFKFPGRQK+L S KWGFTKY R+ Y + R+EG L  DGN   Y   HGPL K
Sbjct:    5 PAKCYRFQNKKPFIKSRYCRGVPDPKIRIYDIGNKKASVDAFPFVAHLVSDEKEQLSSEALEAARISANRYLTKFCGKDNFHMRIRCHPFQVLRINKMLSCAGADRLQTGMRHAYGKPTGVAARVAIGQPIISVRSKDSFGPAVVEALRRAKFKFPGRQKVLGSKKWGFTKYERDTYAKMRQEGQLDYDGNHEIYRPAHGPLDK 208
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BLAST of mRNA_F-serratus_M_contig12.1562.1 vs. uniprot
Match: A0A2R5GSQ0_9STRA (60S ribosomal protein L10 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSQ0_9STRA)

HSP 1 Score: 311 bits (797), Expect = 2.010e-101
Identity = 148/202 (73.27%), Postives = 171/202 (84.65%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPL 606
            PARCYR+ KNKP+IKSRY RGVP+PK++IY+VG KKA VDVFP VCH+ SDE+EQ++SEALEAAR++ NKY+ K AGKD FHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKP G  ARV IGQI+IS+R+K    P A+EALRR+K KFPGRQKI+ S KWGFTKY   EYV+ RKEG+L  DGN  KY+ +HGPL
Sbjct:    5 PARCYRYCKNKPYIKSRYLRGVPEPKLKIYDVGAKKAGVDVFPAVCHMFSDEREQISSEALEAARIACNKYLVKNAGKDAFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPAGVVARVKIGQILISVRTKKQTLPVAMEALRRSKMKFPGRQKIVASKKWGFTKYDTAEYVRMRKEGFLIPDGNQAKYVPRHGPL 206
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BLAST of mRNA_F-serratus_M_contig12.1562.1 vs. uniprot
Match: A0A7S0Q982_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q982_9EUKA)

HSP 1 Score: 308 bits (788), Expect = 7.200e-100
Identity = 145/204 (71.08%), Postives = 175/204 (85.78%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLAK 612
            PARC RFQKNKP+IKSR+CRGVPD KIRIY+ G KK +VDVFP V HLVSDEKEQLT+ ALEAARV+ NKY+ K  GK+ +H+R RAHP+HV+R NKMLSCAGADRL +GMRH+YGKP    AR+SIGQII+S+RSKD +    +EALRRAKFKFPGRQKI++SNKWGFTK+ RE+YV+GRKEGW++ DG SVKYIA+HG +++
Sbjct:   14 PARCVRFQKNKPYIKSRFCRGVPDSKIRIYDCGAKKTNVDVFPFVAHLVSDEKEQLTACALEAARVACNKYLVKNTGKEGYHIRTRAHPYHVIRQNKMLSCAGADRLSSGMRHSYGKPMEMAARISIGQIIVSVRSKDVNANHVIEALRRAKFKFPGRQKIMKSNKWGFTKFDREDYVKGRKEGWIRPDGCSVKYIAEHGRISE 217
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig12.1562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFF2_ECTSI2.280e-13896.14Ribosomal_L16 domain-containing protein n=2 Tax=Ec... [more]
A0A7S2Y043_9STRA1.940e-11883.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U1D6_9STRA1.250e-11279.02Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835YXV3_9STRA1.550e-10876.96Ribosomal protein L10e/L16 n=2 Tax=Tribonema minus... [more]
A0A5D6Y3Y7_9STRA3.810e-10777.83Ribosomal_L16 domain-containing protein n=4 Tax=Py... [more]
M4BZN7_HYAAE2.580e-10678.22Ribosomal_L16 domain-containing protein n=174 Tax=... [more]
F0WNC8_9STRA1.040e-10577.2360S ribosomal protein L10 putative n=1 Tax=Albugo ... [more]
A0A6G0WLK8_9STRA1.880e-10576.47Ribosomal_L16 domain-containing protein n=1 Tax=Ap... [more]
A0A2R5GSQ0_9STRA2.010e-10173.2760S ribosomal protein L10 n=1 Tax=Hondaea fermenta... [more]
A0A7S0Q982_9EUKA7.200e-10071.08Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig12contigF-serratus_M_contig12:1034305..1040531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.9
Seed ortholog evalue3.6e-85
Seed eggNOG ortholog2880.D8LFF2
Preferred nameRPL10L
KEGG koko:K02866
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000027,GO:0002181,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009526,GO:0009536,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009790,GO:0009889,GO:0009941,GO:0009987,GO:0010224,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0012505,GO:0015934,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019953,GO:0022411,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030867,GO:0031090,GO:0031323,GO:0031326,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032984,GO:0032991,GO:0034248,GO:0034622,GO:0034641,GO:0034644,GO:0034645,GO:0036477,GO:0042175,GO:0042254,GO:0042255,GO:0042273,GO:0042788,GO:0043025,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045182,GO:0048232,GO:0048513,GO:0048568,GO:0048609,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060322,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071214,GO:0071478,GO:0071482,GO:0071493,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:0097458,GO:0098542,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098805,GO:0098827,GO:0104004,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990403,GO:1990904,GO:2000112
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0197@1,KOG0857@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons5
Model size1431
Cds size495
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929108.9509451-UTR-F-serratus_M_contig12:1034304..10351111622929108.9509451-UTR-F-serratus_M_contig12:1034304..1035111Fucus serratus maleUTRF-serratus_M_contig12 1034305..1035111 -
1690962708.7756636-UTR-F-serratus_M_contig12:1034304..10351111690962708.7756636-UTR-F-serratus_M_contig12:1034304..1035111Fucus serratus maleUTRF-serratus_M_contig12 1034305..1035111 -
1622929109.0313194-UTR-F-serratus_M_contig12:1040402..10405311622929109.0313194-UTR-F-serratus_M_contig12:1040402..1040531Fucus serratus maleUTRF-serratus_M_contig12 1040403..1040531 -
1690962708.8338897-UTR-F-serratus_M_contig12:1040402..10405311690962708.8338897-UTR-F-serratus_M_contig12:1040402..1040531Fucus serratus maleUTRF-serratus_M_contig12 1040403..1040531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929108.9618664-CDS-F-serratus_M_contig12:1035111..10352101622929108.9618664-CDS-F-serratus_M_contig12:1035111..1035210Fucus serratus maleCDSF-serratus_M_contig12 1035112..1035210 -
1690962708.788691-CDS-F-serratus_M_contig12:1035111..10352101690962708.788691-CDS-F-serratus_M_contig12:1035111..1035210Fucus serratus maleCDSF-serratus_M_contig12 1035112..1035210 -
1622929108.9730487-CDS-F-serratus_M_contig12:1035764..10359021622929108.9730487-CDS-F-serratus_M_contig12:1035764..1035902Fucus serratus maleCDSF-serratus_M_contig12 1035765..1035902 -
1690962708.799094-CDS-F-serratus_M_contig12:1035764..10359021690962708.799094-CDS-F-serratus_M_contig12:1035764..1035902Fucus serratus maleCDSF-serratus_M_contig12 1035765..1035902 -
1622929108.9928243-CDS-F-serratus_M_contig12:1036622..10366851622929108.9928243-CDS-F-serratus_M_contig12:1036622..1036685Fucus serratus maleCDSF-serratus_M_contig12 1036623..1036685 -
1690962708.8080113-CDS-F-serratus_M_contig12:1036622..10366851690962708.8080113-CDS-F-serratus_M_contig12:1036622..1036685Fucus serratus maleCDSF-serratus_M_contig12 1036623..1036685 -
1622929109.0066926-CDS-F-serratus_M_contig12:1037394..10375741622929109.0066926-CDS-F-serratus_M_contig12:1037394..1037574Fucus serratus maleCDSF-serratus_M_contig12 1037395..1037574 -
1690962708.8163865-CDS-F-serratus_M_contig12:1037394..10375741690962708.8163865-CDS-F-serratus_M_contig12:1037394..1037574Fucus serratus maleCDSF-serratus_M_contig12 1037395..1037574 -
1622929109.0191054-CDS-F-serratus_M_contig12:1040387..10404021622929109.0191054-CDS-F-serratus_M_contig12:1040387..1040402Fucus serratus maleCDSF-serratus_M_contig12 1040388..1040402 -
1690962708.8247387-CDS-F-serratus_M_contig12:1040387..10404021690962708.8247387-CDS-F-serratus_M_contig12:1040387..1040402Fucus serratus maleCDSF-serratus_M_contig12 1040388..1040402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig12.1562.1prot_F-serratus_M_contig12.1562.1Fucus serratus malepolypeptideF-serratus_M_contig12 1035112..1040402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig12.1562.1

>prot_F-serratus_M_contig12.1562.1 ID=prot_F-serratus_M_contig12.1562.1|Name=mRNA_F-serratus_M_contig12.1562.1|organism=Fucus serratus male|type=polypeptide|length=165bp
MVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVL
RINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPT
AVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSV
KYIAQHGPLAKAIL*
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mRNA from alignment at F-serratus_M_contig12:1034305..1040531-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig12.1562.1 ID=mRNA_F-serratus_M_contig12.1562.1|Name=mRNA_F-serratus_M_contig12.1562.1|organism=Fucus serratus male|type=mRNA|length=6227bp|location=Sequence derived from alignment at F-serratus_M_contig12:1034305..1040531- (Fucus serratus male)
CCGGCTCGTTGCTACCGCTTCCAAAAGAACAAGCCCTTCATCAAGTCGCG
TTACTGCCGTGGTGTACCCGACCCGAAAATCCGCATTTATGAGGTCGGAA
ACAAGAAGGCCTCTGTGGACGTCTTCCCCATGGTCTGTCACTTGGTGAGA
GAGAGAGATCCCAATGTGATAAAAGTTGTTGTTGGTCCGATTGATTAGTT
GTGGATATGCAAAATCGAGATCGGGTTTGCAAGCGACAGGGGGATGACCA
CACTGGTGATGAATGGATCACAGGACTTGTTTTGGACCGTCTATTTGATT
AATAGTGTGATACTACCACGCGTATTCCTCGGTGTTACTGGCCACTGTAA
GGTTTGGGAGTGTCATCTGGAGATCCGCGTGAACACAGTCGTCCTACTGA
CAATTCTTACATTGTAGGGACTTATTTGTACTCTCTACTCTTTTGAAGTT
ATCAATCAACTTGGCGAGGTTACGACTCCCACGTAATGCCGAGGCGACGC
TTGTGGTCTCTACGGAGTCGGCCCATCGCTTCCCGGACCACGCCTGGGAT
ATTTCATCGCTGTGCACGTCGAGCACGACAGCTTTCCACGATGGAAACGA
GATACTGCTGTATCAGATTTATCCACAGGTTCTTACTATACATATCATCA
AGTCCAATTAACGATACGCTTGTACAGGAGCCTCTTGAGTCCCTCCTACT
CACTAGTCGTAGTACGAAATGGATTGGGTTGCAACCGATTTCTGCATTCT
TTCTCACCACAGCTTATGATTTTATGGAAGAATCTGAACGCATCTCAACT
TTCCGAGCATCCTATCAATCAGAGGGGAAAATTGTCAAAACGAGCTCATC
ATCCAGGTACACATCTTCTTGCCCCGAGGGGGGGATAAATAAATGTGGTC
ACGAACGCTGTCTGCCGACAATAGTAAATTACCTAGTCTAATCCCACTTA
CTTTTCTTGCCCCGAGGGGGGATAAATAAATGTGGTCAGTAATATACCAG
TAGCCTATAATCATATCAATATTCACGTTTTCCATCCCGCCAGGGTTCAA
ATCATCTCTCCGCGGTCGGTTCATGGCCCATTTCTCCAATTGTTCGCGAG
GTGTTATGAAGAAGTTACCAGCATATTTCAGTATATTTCAATCCAGGGTG
AAACTCTGCTCGCTCTTGCTTTCCGCACGACTCGTCCCCCCGACTGGAGT
AAATTTGTGGCAACTGCACTGTAACCTCTCACAGTTACTTTTAATTTAGA
GCCTTTGGTGCACAGAGTCGCGAGTTCGATCCTTGACAGTAGTATCATAA
TAGTTTTTAATGTGTTCCGGTATCTCTTTCGTAGCGAAAAGCGCGAAAGC
GTGTGTAAGTAAAATCGAACTATTGGTTGACGAGGTGTAAGAAAAAATCG
TAGGCGAGAACCGGGCAGTCCGTGAGATAATAAACATGCCTCCCTCAAAA
AACTACCGAAAGTACCTAAATTGTACCAGGTATGGCCCTTTCTGTCCCTG
TTTCACTCCTTAACTCAAACCTCATGTATTTACCACTACCACTACAGTAC
CCGTCCGCTAGTAAGAAACACATTAGTAAGAAAGCCAGGCTCAGATTTTC
GTAGACAAAAGAAAGCGTGGAGCCTCAGAGTCGAGTGCCACACTAAAACC
GATATAACACGCAAGAAACTCAGCCTCAGACCGATTTTCCGTTTCTTACT
AGCGGGCCGGTACTGTAGCTGTCCTATACATCTGGTACCCTACTCATCAT
GCTGTGACGAAGGTACGACGTAGTGTGAAATACAAACACGTATTGAAATA
TTGATTAGACTACACGGCAACAAGTTATTATTAAAATAGAAAAAACTTCA
ACGCGCCTAGACCTTCTTAGCATCCCCCAGTCAGGGGGGAAAATGTCAAA
ACGTTCAGGTGGGAACATAGGCTGCAAACACAAAACCTAGAATGGCATTT
AAACGGGTTATGTTCCACGATGGTATTAATAGTAACATTGGGTCAACAGT
AAAATATCGGGGAAAAGCCCACCGTTATACTTTACACTTACATTAATCGC
CATGCAGGGACTGTCACACGATAAAAACTTAACGAAGTTGAACGAGTACC
ACTCTTGACCAATTAGATAATATCATAACGTTCGTTGTGTTGTATTACTG
TAATAGACTATAATCAGCCCCTCTTGTATTTAAAAGAAAAATCTGAACGC
GCCTAGTCATGAGAAATTGTTGAATTGATTTGATGGCACTATTATCAATA
TTACTAACCTATTTTATTGCCGGTATGTACTACAGCAGTATGATACATTG
TTTTCGTTTACAGTATAACGGTGGGTTTCTCCCCGACATTGTACTGTTGA
CCCAATGTTACCACCATCGGGGAGGGTTTCTCCCCGACGTAGTACTGTTG
ACCCAATGTTACTACCATCGGGGAACCCGTTTAAATGCCAAGAGGTTAGG
TCTTTGATCCTACCTGAACGATTTGACATTTTTTTTCCCTGACTGGGGGA
TGCTCAGAAGGTCTATAATTTTCATAGTATTTTTCTTTAAATAATACTAT
TAATAGACGACACCGTGGCAAATATTTCGCAAATATGGCAATATTAAAAA
AAAAAACTGAAGCATCTAGACCTTCCGATTATCCCTCAATCAGGGGGGGA
AAGTAGGTGTAGTACTGTACAGCACAGCATTATTTAATACCATGGTATTA
TTAGTACTTACCTCCGGACGTTCCGTGTTATCAAGGGAGCTAGTTTTGAT
CTGTGAAAAGCGAGGGTTTCAAGTATAATCAAGGGAGTTGGTTTTGCTCT
ATGAAGAGCGAGGGTTTCAAGTGTTATCAAGGGAGTTGGTTTTGATCGAT
AAAGAACAAAGGTTTCAAACCGCCAGAGATACATTCCTTCCAAGCCTTCA
ACATCTCATTTGGTCTTTAAACTTGCTCCCTCAATCCACGCGCGGGTATA
TCTATAGGTATCAGACGAGAAGGAGCAGCTGACGTCGGAGGCGTTGGAAG
CCGCTCGCGTGTCCGCGAACAAGTACATGGGCAAGTACGCCGGGAAGGAC
AACTTCCACATGCGCATTCGTGCCCACCCGTTCCACGTGCTCCGCATCAA
CAAGATGCTTTCGTGCGCCGGTGCCGATAGGCTGCAGGTGAACGCTGCGC
ACGGCAGCATGATGACGATTTGCCGCGGGCCTCAAAATAGCGCGCTAGCT
TTGTCCTTCCATCTTCTAAGTACTTATTACAAGATGTTTCATTTTTTTAT
TTATTTTTCTCACTTAAAGCCGATGGACCTCATGATTACCATCCTGCTTG
TGGTCACAAAGGATCTTCCCATCTCTCCCCGGTTCACGCCTTACATTTTT
TTATCGCGATGCAAGTTCAGCGTTCTTACAACTCGTCTACCAATGGTTGA
ATTCTACTCACTCACGACTTCCGCACTAGCAGGTGTGCAGGTTACCTACT
AGACCCGTTACTCTATAAAAAATAGAAATAGCGTTTGCTTGTTTGATACT
ACAGCTGTAGCCCTGTTTTGGCTGATATGGATCACCTGTCGAGGGACCTG
TTGTATATGGTTGTGGAAACACATAATGCGAAGGTGCATTCCCAACCCAT
CTTGTCAAAGCCTCCATCTCTCTATAATACTGCTGTAATTTTGAAAAGTA
CCCGGCGTGATGGTGGAAGCTTGGCCCTCGTTATCCCTTTTTCCGTATAC
TTTCGAGCTCACGCGAGGCATTACTTGCATGGCATTCATTTGCATGCTTC
CAATTTCTACTACGAATACTACGTCCCATACCTTTTTTCTGACTCGTGTT
TTGCTGCTGGCTGTCATTTTTTGTTGTTGTTTGTCAAACCTATCAGACCG
GCATGCGGCACGCGTACGGCAAGCCTCATGGGACCACGGCCCGTGTCTCT
ATCGGACAGGTGAGCATGAGATGAATCACTCCCCCCCTGGTATCGATTTA
TAATGAAAAGTACCTGTGGCATAGTAATTCTACCTCGCACTGGAGTGTTT
CATTACATTTTCCTTGTGTACCGTCAGCTCTACCTATTGATACCTTCAAA
TCACCCCCCCCCCTTTCAGGTTTTCCCGTGTTGATATGTTGAGACAAAGA
TAATATGTACAAAAATATAGGCATCATAATGGACTATGTATTAAACAGCC
AGACCGACAATCGGTTCTATTATTACGGCAGTACAAGTACAGTAGCCTTG
AGGCGTTTTTGAGGGGGGACGAGGGGTAGGCACCGAATCCCGTTCGCCCC
CGTGTTCATTGTAACATTTTCATCTATTGGTGCGGGGGAATATACCGCCG
GAATACTGAATACAAGCATGATTAATAGGAGTAGATTGAGTGTATTTTTA
ATTATCAATAAGATGCATTCAGATTTTTCTTTAAACTCCATGTTCACGGT
GTGGATGTGAAAGCCCCCGACAAAGATATTTTACCAAGTCGTTTGATTGT
TGTTGTATCGTTGGTGATCAGTAGTCTATGTGTTTTGTATTAAAAACATT
GAAAGCCTCGAGAGATACAAGTTGTTCCACGATGGTTGATTACAGTTTTT
ACGATAGCAGAAATCGACGCACGCACCCACGTCCAACCAGCGCGTGTCGA
CAACCAACCGATCCTTATGGTGTGTTCAGATTATCATCTCCATCCGCTCC
AAGGACAACCACCGTCCCACCGCGGTCGAGGCCCTCCGCCGAGCCAAGTT
TAAGTTCCCTGGTCGCCAGAAGATCCTCCAGTCCAACAAGTGGGGCTTCA
CCAAGTACTCGAGGGAGGTGAGACAAATGGCAAATAACGGCGCTCGGCAC
CGGTTACCGCGAAAGAGAGGGTTTAACTATTAATAACATATTCCGATACA
TGCACCAGCTTGAGGCGGGTTGAATTATATTACGATACAGTAGTTGAAGT
CGTGAAGGAGCATGACATAATACGATATGATGTGATATGCTAGCTTTGCT
TTCGAAATTATAGTGATGAGGAATGAAACTATGAAATTACGGTACATTAT
TCTTGACTTTGAAGAAAAATACTGATTTGGTGCCCTCGAAGGTTTTCATG
CTCTTGTATTACTGAAAACACACCTAGCCCCGGTATCCTCGCGCCTCAAA
TGGCTTGCGCTATCGCCGCTGTGGTACGGTATAATATGCACTGGGCAATC
CATTGTTACCGGAAGATACTAGTGATGCGTAATCCGTCGAGCCGGACCCG
TCTATCGTTGACGGATGCGACTGACATCGCATTATCCAACGCCTCGCGCT
CCCTTGTCTGTTTTTGATTGGCTTCCCCCCTGCTTCCCTTTCTCCCTCCC
TCCCCTTATCTGTGGTGGCAGGAGTACGTGCAAGGTCGTAAGGAGGGCTG
GCTGCAAAAGGACGGAAATTCGGTCAAGTACATTGCGCAGCACGGACCCC
TCGCAAAGGCCATCCTCTAAGGCGTTAGGCATTTTCCCTTCTGCTTTCCA
AGACTGACGACGACACGACGACTGTGTCCACTAAAACGCCTCACGTAGTT
TGTTGTGACCACCCGCTTCTCTGCCCTGAGACAAAGAGACCCGTTTCCCT
CGGTGGATCTATTTGGGGATCACGAACACTAGAGCTGCAAGCTAGTTCGA
CGTGCTTGGGATAGGACTCCTTGAGAATGCGTGCGGTTCTGTTTCTCGAC
GAGCATGGGGAATGGATGAAGCAGTAGATTTGTCGTTGGAAGTAACGGAA
GCAAAAGAAAAGGAAATGTTGTTGTCTGCCCGCTACCTGGTACCAATGAA
GCTACGGTGTTACAAGTGTGTGCCAGAACGTCCCTGTGTTGAGACGATCG
CTTGCAGCAATGCCCGGCATAGTCGTTCGTTGGACCCGTCTCGATGAGTC
TACTCTTCCACAAATATGATCAATCTACATTGTTCTGATTTGTTGCCGAC
GATAAACGTTTGTACGGCGATTTTTTTTTACATTTATTAAATAGTTGGCA
CTCAACAACTCCATGAAGATGTTTTATCTTTGCAGCCTATGATCCCACCT
AAACGTTTTGTCATTTTTCCCTCTTGACTGGGGTACAGTATAGTACAGTA
CAGTACAGTATGCTCAGAAGGTCTAGATGCGTTCAGATTTTTCTTTGAAT
ATTACCAGCACCCACCTGTATTTGGATGTCAAGTGATTATCGCTCTGCTA
CTTATACTACTACCCTATTCACTGGAAACGTCTCATCGTAATGTTCAATA
AAGAGGTGAACATATTTTTTGTTGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig12:1034305..1040531-

>mRNA_F-serratus_M_contig12.1562.1 ID=mRNA_F-serratus_M_contig12.1562.1|Name=mRNA_F-serratus_M_contig12.1562.1|organism=Fucus serratus male|type=CDS|length=990bp|location=Sequence derived from alignment at F-serratus_M_contig12:1034305..1040531- (Fucus serratus male)
ATGGTCTGTCACTTGATGGTCTGTCACTTGGTATCAGACGAGAAGGAGCA
GCTGACGTCGGAGGCGTTGGAAGCCGCTCGCGTGTCCGCGAACAAGTACA
TGGGCAAGTACGCCGGGAAGGACAACTTCCACATGCGCATTCGTGCCCAC
CCGTTCCACGTGCTCCGCATCAACAAGATGCTTTCGTGCGCCGGTGCCGA
TAGGCTGCAGGTATCAGACGAGAAGGAGCAGCTGACGTCGGAGGCGTTGG
AAGCCGCTCGCGTGTCCGCGAACAAGTACATGGGCAAGTACGCCGGGAAG
GACAACTTCCACATGCGCATTCGTGCCCACCCGTTCCACGTGCTCCGCAT
CAACAAGATGCTTTCGTGCGCCGGTGCCGATAGGCTGCAGACCGGCATGC
GGCACGCGTACGGCAAGCCTCATGGGACCACGGCCCGTGTCTCTATCGGA
CAGACCGGCATGCGGCACGCGTACGGCAAGCCTCATGGGACCACGGCCCG
TGTCTCTATCGGACAGATTATCATCTCCATCCGCTCCAAGGACAACCACC
GTCCCACCGCGGTCGAGGCCCTCCGCCGAGCCAAGTTTAAGTTCCCTGGT
CGCCAGAAGATCCTCCAGTCCAACAAGTGGGGCTTCACCAAGTACTCGAG
GGAGATTATCATCTCCATCCGCTCCAAGGACAACCACCGTCCCACCGCGG
TCGAGGCCCTCCGCCGAGCCAAGTTTAAGTTCCCTGGTCGCCAGAAGATC
CTCCAGTCCAACAAGTGGGGCTTCACCAAGTACTCGAGGGAGGAGTACGT
GCAAGGTCGTAAGGAGGGCTGGCTGCAAAAGGACGGAAATTCGGTCAAGT
ACATTGCGCAGCACGGACCCCTCGCAAAGGCCATCCTCTAAGAGTACGTG
CAAGGTCGTAAGGAGGGCTGGCTGCAAAAGGACGGAAATTCGGTCAAGTA
CATTGCGCAGCACGGACCCCTCGCAAAGGCCATCCTCTAA
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