mRNA_F-serratus_M_contig12.1553.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig12.1553.1 vs. uniprot
Match: D8LFE3_ECTSI (Abortive infection protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE3_ECTSI) HSP 1 Score: 320 bits (820), Expect = 4.130e-100 Identity = 160/217 (73.73%), Postives = 186/217 (85.71%), Query Frame = 2
Query: 443 VVLLWSAVLAANAGFFEELLFRGVIQQWLLPLIGAWPALGITSVLFGLAHNPVPGASSFTEACYGANFGLLYMMSGGNIFVPIVAHIVYDLLTFVEVHNRATAQLQLTLKGRLPEDRKLQANVKKVTRDFKLPEKFVDMSYAVFKQLDLDGNGAIDQQELQLGLRTFGKFASDEETRQIMQKADLDENNALTFDEWVRLLALNYGALLKAINSEKLG 1093
VV LWS VLAANAGFFEE+LFRGVIQQ L LIG PAL I+SVLFGLAH+PVPGASSFTEACYGANFGLLYMMSGGN+ VPI+AH++YD+LTF+EVH RATAQL+ TL+G LP+ + + NV V + F L +KFVDMSY +F+QLDLD NG IDQ+ELQLGLRTFGKFAS EETRQIM++ADLD+NNALTFDEWVRLLALNY ALL+ +++G
Sbjct: 174 VVSLWSFVLAANAGFFEEVLFRGVIQQGLSTLIGGIPALVISSVLFGLAHSPVPGASSFTEACYGANFGLLYMMSGGNLLVPIIAHVLYDMLTFLEVHQRATAQLETTLRGDLPQKEQEKRNVATVVKKFNLSKKFVDMSYGIFQQLDLDKNGVIDQKELQLGLRTFGKFASAEETRQIMREADLDKNNALTFDEWVRLLALNYSALLQPKAGKQIG 390
BLAST of mRNA_F-serratus_M_contig12.1553.1 vs. uniprot
Match: A0A836CHD9_9STRA (CAAX protease self-immunity-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHD9_9STRA) HSP 1 Score: 193 bits (490), Expect = 2.230e-52 Identity = 103/211 (48.82%), Postives = 144/211 (68.25%), Query Frame = 2
Query: 446 VLLWSAVLAANAGFFEELLFRGVIQQWLLPLIGAWPALGITSVLFGLAHNPVPGASSFTEACYGANFGLLYMMSGGNIFVPIVAHIVYDLLTFVEVHNRATAQLQLTLKGRLPED-----------RKLQ-ANVKKVTRDFKLPEKFVDMSYAVFKQLDLDGNGAIDQQELQLGLRTFGKFASDEETRQIMQKADLDENNALTFDEWVRLL 1042
+L +A++AA+AG EE+LFRG+IQ L IG PAL + S+LFGLAHNPVPGASS EA YG FG LY+ +GGN+F PI++H +YDL TFVEVH RAT+++ + G P+ R LQ V+ V + + LP FV + VF LDLD NG +D++ELQLG+RTFG+F +DE+ I ++ADL+++ ++FDE+++LL
Sbjct: 114 ILPAAAIMAASAGIAEEILFRGIIQNGLSNYIGDVPALLVASLLFGLAHNPVPGASSLVEAIYGFTFGSLYIATGGNLFAPILSHFLYDLATFVEVHFRATSRIGVAAAGVPPQPAAASQASGMAARVLQDKRVQDVIKRYGLPAPFVKNAIGVFGMLDLDKNGTLDRRELQLGVRTFGRFTNDEQLDAIYKRADLNQDGEISFDEFLKLL 324
BLAST of mRNA_F-serratus_M_contig12.1553.1 vs. uniprot
Match: A0A7S1YIE3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YIE3_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 3.130e-11 Identity = 64/232 (27.59%), Postives = 108/232 (46.55%), Query Frame = 2
Query: 458 SAVLAANAGFFEELLFRG----VIQQWLLPLIGAWPA----LGITSVLFGLAH-NP---VPGASSFTEACY--------GANFGLLYMMSGGNIFVPIVAHIVYDLLTFVEVHNRATAQLQLTLKGRLPEDRKLQANVKKVTRDFKLPEKFVDMSYAVFKQLDLDGNGAIDQQELQLGLRTFGKFASDEETRQIMQKADLDENNALTFDEWVRLLALNYGALLKAINSEKLG 1093
S L G EE+ FRG + QW G + +++++F H NP + G +F + GA F LY+ S N+ VPI+AH +YD +TF + H Q++ +L + + K T E+FV+ + F +D + +G + ++EL++ L ++G S E+ I + ADLDE+ A+ F E++ + G+ KA+ LG
Sbjct: 159 SVFLGGITGLVEEVTFRGQLLPALAQWSTTAFGVDDGTLFGVALSTLIFAALHANPSGLLKGGDAFLDNLVLLGFQIVTGAIFATLYL-STQNLAVPIIAHSLYDFVTFYKTHLDIAGQMEYASNEKLMPSTEFREEGKWKTER---SEEFVEGARETFYLMDTNKDGVLSRKELRVALFSYGINLSKMESEMIRKVADLDESGAIDFGEFLEFVGPT-GSTRKAVKYAILG 385
BLAST of mRNA_F-serratus_M_contig12.1553.1 vs. uniprot
Match: L1IJ81_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IJ81_GUITC) HSP 1 Score: 72.8 bits (177), Expect = 1.010e-10 Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 2
Query: 479 AGFFEELLFRGVIQQWLLPLIGAWPALGITSVLFGLAH--NPVPGASSFTEACYGANFGLLYMMSGGNIFVPIVAHIVYD 712
AGF EELLFRGV+QQ L G PA+ +TSV FG AH P SF + + FG++ + S GN+ VPI+AH VYD
Sbjct: 143 AGFGEELLFRGVLQQKLAESAGLIPAISLTSVAFGAAHFLTPTYFLLSFIGSIF---FGVVLIQSNGNLLVPIIAHAVYD 219
BLAST of mRNA_F-serratus_M_contig12.1553.1 vs. uniprot
Match: A0A517TAZ8_9PLAN (CAAX amino terminal protease self-immunity n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517TAZ8_9PLAN) HSP 1 Score: 71.6 bits (174), Expect = 2.210e-10 Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 2
Query: 464 VLAANAGFFEELLFRGVIQQWLLPLIGAWPALGITSVLFGLAHNPVPGASSFTEACYGANFGLLYMMSGG-NIFVPIVAHIVYDLLTFVEVHNRATAQLQLTLKGRLP 784
+LA +AG EELLFRG +QQ L G WPAL I S+LFG+ H P + A G FG L +G N++VP++AH +YD L F+ + + + +L ++ P
Sbjct: 98 LLAISAGIGEELLFRGFVQQS-LEGFGYWPALVIASILFGIVHAVTP-TYAVLAALMGFYFGYLLDATGERNLWVPVIAHGLYDWLAFLWIAHEVKKRDKLRIQEDFP 203
BLAST of mRNA_F-serratus_M_contig12.1553.1 vs. uniprot
Match: A0A7S0HZJ2_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HZJ2_9CRYP) HSP 1 Score: 71.6 bits (174), Expect = 6.180e-10 Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 2
Query: 479 AGFFEELLFRGVIQQWLLPLIGAWPALGITSVLFGLAHNPVPGASSFTEACYGANF-GLLYMMSGGNIFVPIVAHIVYDLLTFVEVHNR 742
AGF EELLFRGV+QQ L G PA+ +TSV FG AH P F + +G+ F G + + S GN+ +PI+AH VYD + + N+
Sbjct: 208 AGFGEELLFRGVLQQKLAESAGLVPAVSLTSVAFGAAHFLTP--MYFILSFFGSIFFGAVLIQSNGNLLIPIIAHAVYDYVAIRLILNQ 294
BLAST of mRNA_F-serratus_M_contig12.1553.1 vs. uniprot
Match: A0A2E5QNI2_9BACT (CPBP family intramembrane metalloprotease n=2 Tax=Verrucomicrobiales TaxID=48461 RepID=A0A2E5QNI2_9BACT) HSP 1 Score: 67.0 bits (162), Expect = 5.560e-9 Identity = 43/105 (40.95%), Postives = 57/105 (54.29%), Query Frame = 2
Query: 464 VLAANAGFFEELLFRGVIQQWLLPLIGAWPALGITSVLFGLAHNPVPGASSFTEACYGANFGLLYMMSGGNIFVPIVAHIVYDLLTFVEVHNRATAQLQLTLKGR 778
V+A AG EELLFRG+IQ L G WPALG+ SV+FGLAH G + F G G L +M+G ++ IVAH YD + + + + L+GR
Sbjct: 100 VVALFAGVGEELLFRGLIQGGLARWWGEWPALGVASVVFGLAHCMTCGYAVFATVL-GLLLGWLVLMTG-DLTAAIVAHAGYDFVALLLLTKKGGQDEVPGLEGR 202
BLAST of mRNA_F-serratus_M_contig12.1553.1 vs. uniprot
Match: A0A6N2DZE4_9SPIO (CPBP family intramembrane metalloprotease n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A6N2DZE4_9SPIO) HSP 1 Score: 66.6 bits (161), Expect = 6.370e-9 Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 2
Query: 449 LLWSAVL--AANAGFFEELLFRGVIQQWLLPLIGAWPALGITSVLFGLAH--NPVPGASSFTEACYGANFGLLYMMSGGNIFVPIVAHIVYD 712
L W VL AA AGF EELLFRG++Q L G PAL TS++FGL H + +F + Y G++Y++SG NI VP++AH +YD
Sbjct: 87 LTWPRVLLIAAAAGFGEELLFRGLLQPLLALQFGVVPALIATSIVFGLLHFLSKAYVVFAFVFSLY---LGVIYLLSG-NILVPMLAHGIYD 174
BLAST of mRNA_F-serratus_M_contig12.1553.1 vs. uniprot
Match: UPI00167CA945 (CPBP family glutamic-type intramembrane protease n=2 Tax=Dactylosporangium TaxID=35753 RepID=UPI00167CA945) HSP 1 Score: 66.2 bits (160), Expect = 1.560e-8 Identity = 36/102 (35.29%), Postives = 55/102 (53.92%), Query Frame = 2
Query: 455 WSAVLAANAGFFEELLFRGVIQQWLLPLIGAWPA---LGITSVLFGLAHNPVPGASSFTEACYGANFGLLYMMSGGNIFVPIVAHIVYDLLTFVEVHNRATA 751
W + + A EE+LFRGV L ++G WPA L +T+V++GL H + + G FGLLY++ G N+ VP+VAH V +++ + R A
Sbjct: 128 WVVLASVGAAAAEEVLFRGVALHLLDRVLG-WPAAAALAVTAVVYGLNHLYFGAMTVAQKTLTGVGFGLLYLLGGHNVLVPLVAHAVQNIVVLTVLPRREGA 228
BLAST of mRNA_F-serratus_M_contig12.1553.1 vs. uniprot
Match: UPI001F24F15F (CPBP family intramembrane metalloprotease n=1 Tax=Pseudomonas anguilliseptica TaxID=53406 RepID=UPI001F24F15F) HSP 1 Score: 66.2 bits (160), Expect = 2.220e-8 Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 2
Query: 452 LWSAVLAANAGFFEELLFRGVIQQWLLPLIGAWPALGITSVLFGLAHNPVPGASSFTEACYGANFGLLYMMSGGNIFVPIVAHIVYDLL 718
LW AV A EELLFRG++Q++L+ +GAWP +G+T++LF H P + G +GL++ SG I + I H +LL
Sbjct: 153 LWLAVNLGVAVLAEELLFRGLLQRYLVSWLGAWPGIGLTTLLFAAVHIPFSPLFAMLAGVAGLGYGLIFHFSG-RISLAIALHGAVNLL 240 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig12.1553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig12.1553.1 >prot_F-serratus_M_contig12.1553.1 ID=prot_F-serratus_M_contig12.1553.1|Name=mRNA_F-serratus_M_contig12.1553.1|organism=Fucus serratus male|type=polypeptide|length=237bp MGCNVNQHGTATQVVLLWSAVLAANAGFFEELLFRGVIQQWLLPLIGAWPback to top mRNA from alignment at F-serratus_M_contig12:881908..885225+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig12.1553.1 ID=mRNA_F-serratus_M_contig12.1553.1|Name=mRNA_F-serratus_M_contig12.1553.1|organism=Fucus serratus male|type=mRNA|length=3318bp|location=Sequence derived from alignment at F-serratus_M_contig12:881908..885225+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig12:881908..885225+ >mRNA_F-serratus_M_contig12.1553.1 ID=mRNA_F-serratus_M_contig12.1553.1|Name=mRNA_F-serratus_M_contig12.1553.1|organism=Fucus serratus male|type=CDS|length=1422bp|location=Sequence derived from alignment at F-serratus_M_contig12:881908..885225+ (Fucus serratus male)back to top |