mRNA_F-serratus_M_contig12.1540.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig12.1540.1
Unique NamemRNA_F-serratus_M_contig12.1540.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig12.1540.1 vs. uniprot
Match: D8LFD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD5_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 2.810e-41
Identity = 78/100 (78.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:    4 IDFGSTHDIRDQSKDAAYLLGFLVSFAALSCFHVVREGLKSKQVSAFRLLVQCVRIISSVVPEDLSLELNQCLRNGVMSLQRDHALACTEPFRIPLAGKV 303
            IDFG+ H +R +SKDA YLL FL++FAALS  HVVREGLKS+ VS FRLLVQCVRI+S+VVP DLS ELNQCLRNGV SLQ  HALACTEPFRIPLAGKV
Sbjct:  597 IDFGN-HGVRQESKDAGYLLAFLLTFAALSSAHVVREGLKSQAVSGFRLLVQCVRILSAVVPGDLSFELNQCLRNGVRSLQNGHALACTEPFRIPLAGKV 695
[Close]
BLAST of mRNA_F-serratus_M_contig12.1540.1 vs. uniprot
Match: A0A7R9TT92_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TT92_9VIRI)

HSP 1 Score: 84.3 bits (207), Expect = 1.700e-17
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:   16 STHDIRDQSKDAAYLLGFLVSFAALSCFHVVREGLKSKQVSAFRLLVQCVRIISSVVPEDLSLELNQCLRNGVMSLQRDHALACTEPFRIPLAGKV 303
            ST  +   S++    + FL+ FA  +  +V+REGL   Q S ++LL+QCV I++SVVP +L +EL+  + N ++ L R   + CTEPFRIPL GKV
Sbjct:   41 STERVSANSRETGLFILFLLGFAVAASAYVLREGLADPQRSRYKLLLQCVMIVTSVVPPELPMELSMAVNNSLVGLARQ-GVFCTEPFRIPLGGKV 135
[Close]
BLAST of mRNA_F-serratus_M_contig12.1540.1 vs. uniprot
Match: A0A061RLH1_9CHLO (Cation-transporting ATPase 13A1 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RLH1_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 1.020e-16
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:    1 MIDFGSTHDIRDQSKDAAYLLGFLVSFAALSCFHVVREGLKSKQVSAFRLLVQCVRIISSVVPEDLSLELNQCLRNGVMSLQRDHALACTEPFRIPLAGKV 303
            M++F ST  +    K+ A LLG L  FA  S  +V+ EGLK +  S ++LL++CV I++SVVP DL +++   ++  +MSL + + + CTEPFRIP AG+V
Sbjct:  510 MVEF-STEKVASDKKETAMLLGLLFCFACASSGYVLYEGLKDESRSRYQLLLRCVLILTSVVPPDLPMQMALAVQTALMSLHKAN-IFCTEPFRIPYAGRV 608
[Close]
BLAST of mRNA_F-serratus_M_contig12.1540.1 vs. uniprot
Match: A0A6B2KXG1_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KXG1_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 1.650e-15
Identity = 41/101 (40.59%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 MIDFGSTHDIRDQSKDAAYLLGFLVSFAALSCFHVVREGLKSKQVSAFRLLVQCVRIISSVVPEDLSLELNQCLRNGVMSLQRDHALACTEPFRIPLAGKV 303
            M+ + S H +R  S DA +L+ FL+ FA  +  +V+++GL++K  S F LL+ C  II++VVP +L ++    +   +M+L + H + CTEPFRIP AGK+
Sbjct:    1 MMQYSSEH-VRSDSWDAFFLVSFLMLFAVSTSSYVLKKGLENKDRSNFELLLHCTMIITNVVPPELPMQTALAVNTALMALMQLH-IFCTEPFRIPTAGKI 99
[Close]
BLAST of mRNA_F-serratus_M_contig12.1540.1 vs. uniprot
Match: A0A8J8NFN3_HALGN (Uncharacterized protein n=2 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NFN3_HALGN)

HSP 1 Score: 79.0 bits (193), Expect = 5.800e-15
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:   16 STHDIRDQSKDAAYLLGFLVSFAALSCFHVVREGLKSKQVSAFRLLVQCVRIISSVVPEDLSLELNQCLRNGVMSLQRDHALACTEPFRIPLAGKV 303
            ST  +  +SK+  + L  L+ FA  + +HV+ EGLK    S  +LL++CV II++VVP +L +EL+  +   ++ L +  A+ CTEPFRIP AGKV
Sbjct:  408 STERVTIESKETYFYLLILLCFALAASYHVLTEGLKDPDRSRQKLLLRCVLIITNVVPPELPMELSMAVNYSIIQLVKK-AIFCTEPFRIPFAGKV 502
[Close]
BLAST of mRNA_F-serratus_M_contig12.1540.1 vs. uniprot
Match: A0A024G346_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G346_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.820e-15
Identity = 38/96 (39.58%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:   16 STHDIRDQSKDAAYLLGFLVSFAALSCFHVVREGLKSKQVSAFRLLVQCVRIISSVVPEDLSLELNQCLRNGVMSLQRDHALACTEPFRIPLAGKV 303
            S+  +   + +A Y + FL+ FA  +  +V+ +GL+ +  S F+LL+ CV II+SVVP +L +EL+  + N +++L + H + CTEPFRIP AG++
Sbjct:  453 SSQRVTANNVEAMYFIAFLLVFALSAAGYVLSQGLQDQTRSRFKLLLHCVMIITSVVPPELPMELSLAVTNSLLALIK-HQIFCTEPFRIPFAGRI 547
[Close]
BLAST of mRNA_F-serratus_M_contig12.1540.1 vs. uniprot
Match: A0A7S3VLQ0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VLQ0_DUNTE)

HSP 1 Score: 78.6 bits (192), Expect = 7.930e-15
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:   16 STHDIRDQSKDAAYLLGFLVSFAALSCFHVVREGLKSKQVSAFRLLVQCVRIISSVVPEDLSLELNQCLRNGVMSLQRDHALACTEPFRIPLAGKV 303
            ST ++   S +A   + FL+ FA  + +HV+  GL+  +   F+LL+ CV II+SV+P +L +EL+  +   +M+L +     CTEPFRIP AGKV
Sbjct:  394 STENVTANSLEAGLFILFLLVFALAAAWHVLSNGLQDPERDRFKLLLNCVMIITSVIPPELPMELSMAVNASLMALAKKKVF-CTEPFRIPFAGKV 488
[Close]
BLAST of mRNA_F-serratus_M_contig12.1540.1 vs. uniprot
Match: A0A7S1X1D6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X1D6_9CHLO)

HSP 1 Score: 78.2 bits (191), Expect = 9.760e-15
Identity = 40/101 (39.60%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 MIDFGSTHDIRDQSKDAAYLLGFLVSFAALSCFHVVREGLKSKQVSAFRLLVQCVRIISSVVPEDLSLELNQCLRNGVMSLQRDHALACTEPFRIPLAGKV 303
            M++F ST  +    K+ A LL  L  FA  S  +V+ +GLK +  S ++LL++CV I++SVVP +L +++   +   +M+L + + + CTEPFRIP+ GKV
Sbjct:   92 MVEF-STEQVSADKKETAMLLCLLFCFACASSGYVLYQGLKDESRSKYQLLLRCVLILTSVVPPELPMQMGLAVNTALMALHKSN-IFCTEPFRIPMGGKV 190
[Close]
BLAST of mRNA_F-serratus_M_contig12.1540.1 vs. uniprot
Match: A0A1V9YCL1_9STRA (P-type ATPase (P-ATPase) Superfamily n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YCL1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.470e-14
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   40 SKDAAYLLGFLVSFAALSCFHVVREGLKSKQVSAFRLLVQCVRIISSVVPEDLSLELNQCLRNGVMSLQRDHALACTEPFRIPLAGKV 303
            ++++ Y + FL+ FA  +   V+ EG K    S F+L + CV II+SVVP +L +EL+  + N ++SL R  A+ CTEPFRIPLAGKV
Sbjct:  412 NRESMYFILFLLCFAVAASAVVLVEGAKDPSRSQFKLFLHCVMIITSVVPPELPMELSLAVTNSLLSLAR-MAVFCTEPFRIPLAGKV 498
[Close]
BLAST of mRNA_F-serratus_M_contig12.1540.1 vs. uniprot
Match: A0A7S1J4X1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J4X1_9EUGL)

HSP 1 Score: 77.8 bits (190), Expect = 1.490e-14
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:    1 MIDFGSTHDIRDQSKDAAYLLGFLVSFAALSCFHVVREGLKSKQVSAFRLLVQCVRIISSVVPEDLSLELNQCLRNGVMSLQRDHALACTEPFRIPLAGKV 303
            MI+F S   +   SK+    LG L+ FA +S  +V+++GL+ K  +   LL++CV II+SVVP  L +++   +   +MSL ++  + CTEPFR+P AGKV
Sbjct:  537 MIEF-SQQKVSSDSKETLMALGVLLIFALVSAGYVLKQGLEKKDRTTHELLLKCVIIITSVVPRQLPMQMAFAVNTALMSLMKN-GIFCTEPFRVPFAGKV 635
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig12.1540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFD5_ECTSI2.810e-4178.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9TT92_9VIRI1.700e-1743.75Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A061RLH1_9CHLO1.020e-1643.56Cation-transporting ATPase 13A1 n=2 Tax=Tetraselmi... [more]
A0A6B2KXG1_9EUKA1.650e-1540.59Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A8J8NFN3_HALGN5.800e-1542.71Uncharacterized protein n=2 Tax=Halteria grandinel... [more]
A0A024G346_9STRA5.820e-1539.58Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A7S3VLQ0_DUNTE7.930e-1540.63Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A7S1X1D6_9CHLO9.760e-1539.60Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A1V9YCL1_9STRA1.470e-1446.59P-type ATPase (P-ATPase) Superfamily n=1 Tax=Achly... [more]
A0A7S1J4X1_9EUGL1.490e-1440.59Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig12contigF-serratus_M_contig12:497440..498716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue3.6e-35
Seed eggNOG ortholog2880.D8LFD5
KEGG koko:K14950
KEGG TC3.A.3.10
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001709,GO:0003674,GO:0003824,GO:0005215,GO:0005388,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0007154,GO:0007275,GO:0008150,GO:0008324,GO:0009267,GO:0009555,GO:0009605,GO:0009846,GO:0009856,GO:0009888,GO:0009987,GO:0009991,GO:0010073,GO:0010152,GO:0012505,GO:0015075,GO:0015085,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0016020,GO:0016021,GO:0016036,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0021700,GO:0022414,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030154,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0033554,GO:0034220,GO:0042592,GO:0042594,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044706,GO:0045165,GO:0046873,GO:0048229,GO:0048507,GO:0048856,GO:0048863,GO:0048865,GO:0048867,GO:0048869,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071496,GO:0071944,GO:0072503,GO:0072507,GO:0072511,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099131,GO:0099132
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0209@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons3
Model size306
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig12.1540.1prot_F-serratus_M_contig12.1540.1Fucus serratus malepolypeptideF-serratus_M_contig12 497440..498716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929103.8930428-CDS-F-serratus_M_contig12:497439..4975861622929103.8930428-CDS-F-serratus_M_contig12:497439..497586Fucus serratus maleCDSF-serratus_M_contig12 497440..497586 -
1690962706.5978482-CDS-F-serratus_M_contig12:497439..4975861690962706.5978482-CDS-F-serratus_M_contig12:497439..497586Fucus serratus maleCDSF-serratus_M_contig12 497440..497586 -
1622929103.9058444-CDS-F-serratus_M_contig12:498302..4984091622929103.9058444-CDS-F-serratus_M_contig12:498302..498409Fucus serratus maleCDSF-serratus_M_contig12 498303..498409 -
1690962706.6098616-CDS-F-serratus_M_contig12:498302..4984091690962706.6098616-CDS-F-serratus_M_contig12:498302..498409Fucus serratus maleCDSF-serratus_M_contig12 498303..498409 -
1622929103.9201775-CDS-F-serratus_M_contig12:498664..4987161622929103.9201775-CDS-F-serratus_M_contig12:498664..498716Fucus serratus maleCDSF-serratus_M_contig12 498665..498716 -
1690962706.617721-CDS-F-serratus_M_contig12:498664..4987161690962706.617721-CDS-F-serratus_M_contig12:498664..498716Fucus serratus maleCDSF-serratus_M_contig12 498665..498716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig12.1540.1

>prot_F-serratus_M_contig12.1540.1 ID=prot_F-serratus_M_contig12.1540.1|Name=mRNA_F-serratus_M_contig12.1540.1|organism=Fucus serratus male|type=polypeptide|length=102bp
MIDFGSTHDIRDQSKDAAYLLGFLVSFAALSCFHVVREGLKSKQVSAFRL
LVQCVRIISSVVPEDLSLELNQCLRNGVMSLQRDHALACTEPFRIPLAGK
V*
back to top

mRNA from alignment at F-serratus_M_contig12:497440..498716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig12.1540.1 ID=mRNA_F-serratus_M_contig12.1540.1|Name=mRNA_F-serratus_M_contig12.1540.1|organism=Fucus serratus male|type=mRNA|length=1277bp|location=Sequence derived from alignment at F-serratus_M_contig12:497440..498716- (Fucus serratus male)
ATGATCGATTTCGGCAGCACCCACGACATTCGCGATCAGTCCAAGGATGC
TGGTGAGGCAGCTCGCCTTTGTTGTGACGGGCACACAAGACTGGTACGGA
TAGACAGTCTTCGAAGCGTTTTCGTGCATGAAGCAAGCGTCCGTGAAATT
CTCTTAAGGCCGTCTTCATTCATCTGCTTTGGTAATTCCCCCCAACTAGT
CCTGCGCCCCCCCCTCACCCCACTCCCTCTGTTGTACAGACGCCGTCTTA
AATGTGGAGATAATGACTGCCGTGTTTGTTCCCTGCCCTGCCCTGCATGT
GCGGCAGCTTACCTGCTGGGTTTCCTAGTGTCTTTTGCGGCGTTGTCGTG
TTTCCACGTCGTGAGGGAAGGGCTCAAGTCCAAGCAAGTTTCCGCCTTCA
GACTCCTCGTGCAGGTACGTGATGAAATGACACGCTGAAAAGACTCTCGG
GGAAGAATCGATCGAAATTCAACAGTATCGAAAAAGGGCATTTATAAATA
ACAAAACAAGGAAAACCAAACCAAAAACTGGTTGACAAGAAAAGGAAGCG
GAAATGATAACCAAAACAACCAAAACAACCAAATATACTTGTGTTGAAAA
CAGATTAGAAAATAGAAATCGATGGGATGATGCGGACGTTTATCCCCGAC
AATATTATATCGTCTTCTTCCACCCACATCCCTCCGTCGCACACATCCAT
CCGTCGATGTTCTTAACCTCGGAAGCGTGCTCGCACGTGTATCTAACAGC
ATTCCGCTAACATCCAATTAATACTACCAGGTATTCAATACCGTATCAGT
GCATATGTTTCCTACATCGTGTACAACTCTCGATTGAGGCTCACCTATCT
AACCCTAAATAATCCGCCCCGCCCCGCCCCCCAGAAAAAAAGCCTCTACA
GCAGTACGAGAACCGGGTAGAGTTTATTAAGATTTCAAGGAAATACTTCC
GTACAACTAGCATTCCGTTTCTGCGACTATGCCACGTTTATAAGCCGCCG
CGATCCAATTCTCAAACCCTGTCCCCGCTGAAGTCACCCCATATGGACAT
GCCTTAGAACTCCTCGACTCTTTTTTTCTTCGTTCCAAACGACCCCCTTA
CAAGACACAGCCCTTTCGTGTGCGACTCAGTGCGTACGAATAATTTCCTC
AGTTGTTCCCGAAGACCTGTCGCTCGAGCTGAACCAGTGCCTCAGGAACG
GAGTGATGTCGCTACAGAGGGATCACGCGCTGGCGTGCACGGAGCCCTTC
CGCATACCTCTCGCCGGAAAGGTGTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig12:497440..498716-

>mRNA_F-serratus_M_contig12.1540.1 ID=mRNA_F-serratus_M_contig12.1540.1|Name=mRNA_F-serratus_M_contig12.1540.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig12:497440..498716- (Fucus serratus male)
ATGATCGATTTCGGCAGCACCCACGACATTCGCGATCAGTCCAAGGATGC
TGATGATCGATTTCGGCAGCACCCACGACATTCGCGATCAGTCCAAGGAT
GCTGCTTACCTGCTGGGTTTCCTAGTGTCTTTTGCGGCGTTGTCGTGTTT
CCACGTCGTGAGGGAAGGGCTCAAGTCCAAGCAAGTTTCCGCCTTCAGAC
TCCTCGTGCAGCTTACCTGCTGGGTTTCCTAGTGTCTTTTGCGGCGTTGT
CGTGTTTCCACGTCGTGAGGGAAGGGCTCAAGTCCAAGCAAGTTTCCGCC
TTCAGACTCCTCGTGCAGTGCGTACGAATAATTTCCTCAGTTGTTCCCGA
AGACCTGTCGCTCGAGCTGAACCAGTGCCTCAGGAACGGAGTGATGTCGC
TACAGAGGGATCACGCGCTGGCGTGCACGGAGCCCTTCCGCATACCTCTC
GCCGGAAAGGTGTGATGCGTACGAATAATTTCCTCAGTTGTTCCCGAAGA
CCTGTCGCTCGAGCTGAACCAGTGCCTCAGGAACGGAGTGATGTCGCTAC
AGAGGGATCACGCGCTGGCGTGCACGGAGCCCTTCCGCATACCTCTCGCC
GGAAAGGTGTGA
back to top