mRNA_F-serratus_M_contig12.1539.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig12.1539.1
Unique NamemRNA_F-serratus_M_contig12.1539.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig12.1539.1 vs. uniprot
Match: D8LFD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD5_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.150e-32
Identity = 67/101 (66.34%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 GSPEAMLGLLDRSTLPDWYEKEYARLARSGRRVIALAHRTLGPSGGVKGVKEKEAMALPRHDVEREGFLTFDGFLSFHCKTRVDSHAVIRGLREVGGCAST 303
            GSPE+M  LLD   LPDWYE+EY RLARSGRRV+ALAHR+LGPS   KG K   A +L R + E+EG L FDGFLSFHCKTR DS  VIR LR  GGC+ T
Sbjct:  922 GSPESMKPLLDDEVLPDWYEEEYDRLARSGRRVVALAHRSLGPSKS-KGAKAALA-SLSRAEAEKEGSLVFDGFLSFHCKTRADSKRVIRDLRHAGGCSVT 1020
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BLAST of mRNA_F-serratus_M_contig12.1539.1 vs. uniprot
Match: A0A6H5KDZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ3_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.610e-29
Identity = 62/96 (64.58%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:   16 MLGLLDRSTLPDWYEKEYARLARSGRRVIALAHRTLGPSGGVKGVKEKEAMALPRHDVEREGFLTFDGFLSFHCKTRVDSHAVIRGLREVGGCAST 303
            M  LLD   LPDWYE+EY RLAR+GRRV+ALAHR+LGPS   KG K     +L R +VE+EG L FDGFLSFHCKTR DS  VIR LR  GGC+ T
Sbjct:    1 MKALLDNEGLPDWYEEEYDRLARTGRRVVALAHRSLGPSKS-KGAKAA-LTSLSRAEVEKEGSLVFDGFLSFHCKTRADSKRVIRDLRRAGGCSVT 94
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BLAST of mRNA_F-serratus_M_contig12.1539.1 vs. uniprot
Match: A0A0L0DKD0_THETB (P-type ATPase superfamily n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DKD0_THETB)

HSP 1 Score: 66.6 bits (161), Expect = 1.190e-10
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:    1 GSPEAMLGLL-DRSTLPDWYEKEYARLARSGRRVIALAHRTL-GPSGGVKGVKEKEAMAL-PRHDVEREGFLTFDGFLSFHCKTRVDSHAVIRGLRE 282
            GSPEA+  LL   S L  WY   Y RLA+ G+RV+ALAH+ + GP G        E +    R  +E +  L FDGF+ F C  R DS  V+  LRE
Sbjct:  732 GSPEAVAKLLAPTSGLSSWYNATYQRLAKDGKRVLALAHKVVSGPRGDAAVATAAEQLFEGSRSSIESD--LVFDGFIVFSCAVRADSRDVVAELRE 826
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig12.1539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFD5_ECTSI2.150e-3266.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDZ3_9PHAE2.610e-2964.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0L0DKD0_THETB1.190e-1043.30P-type ATPase superfamily n=1 Tax=Thecamonas trahe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig12contigF-serratus_M_contig12:493298..495069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue3.2e-25
Seed eggNOG ortholog2880.D8LFD5
KEGG koko:K14950
KEGG TC3.A.3.10
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001709,GO:0003674,GO:0003824,GO:0005215,GO:0005388,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0007154,GO:0007275,GO:0008150,GO:0008324,GO:0009267,GO:0009555,GO:0009605,GO:0009846,GO:0009856,GO:0009888,GO:0009987,GO:0009991,GO:0010073,GO:0010152,GO:0012505,GO:0015075,GO:0015085,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0016020,GO:0016021,GO:0016036,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0021700,GO:0022414,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030154,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0033554,GO:0034220,GO:0042592,GO:0042594,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044706,GO:0045165,GO:0046873,GO:0048229,GO:0048507,GO:0048856,GO:0048863,GO:0048865,GO:0048867,GO:0048869,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071496,GO:0071944,GO:0072503,GO:0072507,GO:0072511,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099131,GO:0099132
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0209@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons3
Model size305
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig12.1539.1prot_F-serratus_M_contig12.1539.1Fucus serratus malepolypeptideF-serratus_M_contig12 493298..495054 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929103.8209538-CDS-F-serratus_M_contig12:493297..4933361622929103.8209538-CDS-F-serratus_M_contig12:493297..493336Fucus serratus maleCDSF-serratus_M_contig12 493298..493336 -
1690962706.5504649-CDS-F-serratus_M_contig12:493297..4933361690962706.5504649-CDS-F-serratus_M_contig12:493297..493336Fucus serratus maleCDSF-serratus_M_contig12 493298..493336 -
1622929103.833001-CDS-F-serratus_M_contig12:493867..4939861622929103.833001-CDS-F-serratus_M_contig12:493867..493986Fucus serratus maleCDSF-serratus_M_contig12 493868..493986 -
1690962706.5639596-CDS-F-serratus_M_contig12:493867..4939861690962706.5639596-CDS-F-serratus_M_contig12:493867..493986Fucus serratus maleCDSF-serratus_M_contig12 493868..493986 -
1622929103.8429275-CDS-F-serratus_M_contig12:494924..4950541622929103.8429275-CDS-F-serratus_M_contig12:494924..495054Fucus serratus maleCDSF-serratus_M_contig12 494925..495054 -
1690962706.573484-CDS-F-serratus_M_contig12:494924..4950541690962706.573484-CDS-F-serratus_M_contig12:494924..495054Fucus serratus maleCDSF-serratus_M_contig12 494925..495054 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929103.8587773-UTR-F-serratus_M_contig12:495054..4950691622929103.8587773-UTR-F-serratus_M_contig12:495054..495069Fucus serratus maleUTRF-serratus_M_contig12 495055..495069 -
1690962706.5858276-UTR-F-serratus_M_contig12:495054..4950691690962706.5858276-UTR-F-serratus_M_contig12:495054..495069Fucus serratus maleUTRF-serratus_M_contig12 495055..495069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig12.1539.1

>prot_F-serratus_M_contig12.1539.1 ID=prot_F-serratus_M_contig12.1539.1|Name=mRNA_F-serratus_M_contig12.1539.1|organism=Fucus serratus male|type=polypeptide|length=96bp
MLGLLDRSTLPDWYEKEYARLARSGRRVIALAHRTLGPSGGVKGVKEKEA
MALPRHDVEREGFLTFDGFLSFHCKTRVDSHAVIRGLREVGGCAST
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mRNA from alignment at F-serratus_M_contig12:493298..495069-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig12.1539.1 ID=mRNA_F-serratus_M_contig12.1539.1|Name=mRNA_F-serratus_M_contig12.1539.1|organism=Fucus serratus male|type=mRNA|length=1772bp|location=Sequence derived from alignment at F-serratus_M_contig12:493298..495069- (Fucus serratus male)
GGCAGCCCGGAGGCGATGTTGGGGCTGCTGGACCGGTCGACGCTGCCCGA
CTGGTACGAGAAGGAGTACGCTCGACTTGCGAGGTCGGGCAGGAGGGTGA
TCGCCCTTGCTCACCGAACCCTAGGTCCTTCTGGTGGCGTCAAAGGTGGG
AGGGAAGGTTACAAGTTTTATTTAATACGTACTGTATTGTACTACATATG
TGTGTGTGTGTGTGTTTTCTTACGGAGGAGGTGCGTTCCTTTTCTGTAAA
ATAGCAATGCCACCTAAACACCACAGGCTTTCCGCCTTATCACGCTTCGA
ATGGCCCGTCATCACACACGTGCATGTTCTACTACGCCGAGAACGTAAAG
AATATGAAAAAGAAAACAGTTTTATTTTTAATGCAAAGGTGGTACTTGTA
TATACCGGTATGCTGTAACGAAAAAAAAATGTCCCCTTCACGTCAGACTT
TTTTTTAAGAAAACGGCTTGCATTCGATGGCTCACGACTTCACGACGCGC
GTAGTTTCGACTGGAAATGCGCCATATGATGAGGATGAATCTATGCTCCT
TGTTTCGACGATCGCTGTGAAGCAAGTGCTAGGAAGAGGGCTGCTGTAAA
ATGACGCAGGTAATATTACACCGATTAACGGCGCACTGCGACACAACACT
TTATGGAAAGCCAGACAATGTGTCGGTTTCGCCGCAAATCTACGCTAACG
GTTGGTATCCGGCATCAGCATCTCTGTTCGAGGCCCATCGACGCAGAAAC
GAATGACCCTCCGATGCATTACAACAACCACGAAGCCATTCTCCGTTCAT
CGGTTTTGGTAGGCACGTCCGTCCAGATTACCTTTCCATCCTTCCAACAG
ACCAGAGACCAAGTTCTGAGGCGCGAACGCAGAAAGGGAAAGTTCATGTT
CATTTTCCCTGTTCAGCTGGCCACAAGCAGGATTGGCAACCTTACCCGGT
TGATCCATACTCTTGCTATATGTGTCACCATACATACATGCTCCGTACAG
TATATGGTAACTCGGGGACTTTTTTATCGCTGTCGCTTGATTAACCAACC
ATTTAGTTTTTTGTTTATTTTTGACATTTTCAGGCGTGAAGGAAAAAGAG
GCAATGGCGCTCCCGAGGCACGACGTAGAACGGGAGGGTTTCCTAACCTT
TGACGGATTTCTCTCCTTTCACTGCAAGACTAGGGTCGACAGTCACGCGG
TGGTGAGAGCTGGTTCCCCTTCGTAATACTATCAATATTAAATATTACTA
TTGTTAGTACACTTTTACGCCCGTGGCGTCTCAGTTGTGCTGTGTTGAGA
GTATATACAAGAATCGTTCTTATATATTTCTGGTTGAAATCACTAGATAT
TGTGTCATGTAACCATTTACTATGGTCACCTACCAAACGTTTTGCCGGGA
ACAGCAGGAGGACTTTCCCGCTTTTTTATTGTCTCCACGGCGACGGGTTT
TGGACTACCAAGCGAATATTTTGTGTCTGTGTGTGTGTGTGATAAACTCT
CCCCAGGAAAATAAACTATTAATATGTACTGTACCAGTACTACGTATATA
CTTTGGAACAAAGTTATAATAAGGCACGCGCGATCGATTATTGGAAGCCT
TCCTTCGAAAGGGTGGACGTTATCGAAGAAAGGGACAATATTGTACCTTT
TTCGTGATTCTCTTAGAAAAATATAGAGACTACATCCAGTATGAATATTG
GTCGTAGCTTGATCCACCCCCCTTTGGCCGCAGATCCGCGGGCTCAGGGA
GGTGGGTGGGTGTGCATCGACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig12:493298..495069-

>mRNA_F-serratus_M_contig12.1539.1 ID=mRNA_F-serratus_M_contig12.1539.1|Name=mRNA_F-serratus_M_contig12.1539.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig12:493298..495069- (Fucus serratus male)
ATGTTGGGGCTGCTGGACCGGTCGACGCTGCCCGACTGGTACGAGAAGGA
GTACGCTCGACTTGCGAGGTCGGGCAGGAGGGTGATCGCCCTTGCTCACC
GAACCCTAGGTCCTTCTGGTGGCGTCAAAGATGTTGGGGCTGCTGGACCG
GTCGACGCTGCCCGACTGGTACGAGAAGGAGTACGCTCGACTTGCGAGGT
CGGGCAGGAGGGTGATCGCCCTTGCTCACCGAACCCTAGGTCCTTCTGGT
GGCGTCAAAGGCGTGAAGGAAAAAGAGGCAATGGCGCTCCCGAGGCACGA
CGTAGAACGGGAGGGTTTCCTAACCTTTGACGGATTTCTCTCCTTTCACT
GCAAGACTAGGGTCGACAGTCACGCGGTGGCGTGAAGGAAAAAGAGGCAA
TGGCGCTCCCGAGGCACGACGTAGAACGGGAGGGTTTCCTAACCTTTGAC
GGATTTCTCTCCTTTCACTGCAAGACTAGGGTCGACAGTCACGCGGTGAT
CCGCGGGCTCAGGGAGGTGGGTGGGTGTGCATCGACCATCCGCGGGCTCA
GGGAGGTGGGTGGGTGTGCATCGACC
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