mRNA_F-serratus_M_contig1198.1517.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1198.1517.1
Unique NamemRNA_F-serratus_M_contig1198.1517.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1198.1517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1198contigF-serratus_M_contig1198:217265..217825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size561
Cds size369
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929097.7317262-UTR-F-serratus_M_contig1198:217264..2174561622929097.7317262-UTR-F-serratus_M_contig1198:217264..217456Fucus serratus maleUTRF-serratus_M_contig1198 217265..217456 +
1690962703.4143152-UTR-F-serratus_M_contig1198:217264..2174561690962703.4143152-UTR-F-serratus_M_contig1198:217264..217456Fucus serratus maleUTRF-serratus_M_contig1198 217265..217456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929097.7476242-CDS-F-serratus_M_contig1198:217456..2178251622929097.7476242-CDS-F-serratus_M_contig1198:217456..217825Fucus serratus maleCDSF-serratus_M_contig1198 217457..217825 +
1690962703.4236436-CDS-F-serratus_M_contig1198:217456..2178251690962703.4236436-CDS-F-serratus_M_contig1198:217456..217825Fucus serratus maleCDSF-serratus_M_contig1198 217457..217825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1198.1517.1prot_F-serratus_M_contig1198.1517.1Fucus serratus malepolypeptideF-serratus_M_contig1198 217457..217825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1198.1517.1

>prot_F-serratus_M_contig1198.1517.1 ID=prot_F-serratus_M_contig1198.1517.1|Name=mRNA_F-serratus_M_contig1198.1517.1|organism=Fucus serratus male|type=polypeptide|length=123bp
MLLVSPFPPSSVFLFRCVPHPLPLPLSSCLGCIPPLIGLPLLRSLLRSVS
CGCHQCFSSACDLVCVLCFLFIVTMSFAGCFLVRSLLSAFPAYFRTYFRL
DLVWFRLSCDPGWICGGSVDLR*
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mRNA from alignment at F-serratus_M_contig1198:217265..217825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1198.1517.1 ID=mRNA_F-serratus_M_contig1198.1517.1|Name=mRNA_F-serratus_M_contig1198.1517.1|organism=Fucus serratus male|type=mRNA|length=561bp|location=Sequence derived from alignment at F-serratus_M_contig1198:217265..217825+ (Fucus serratus male)
AAAATCCAGCCCTCTATCTTGTGTCCACTGCTGGATTCGTAGCGGATCAG
TTGATATTGTGAGATGAACAACAACGTCTGCGATTTTGTGTTATTTTGGT
GTTTTGTTTTCATTTGTCTTCTTCCTGCGATATAGGTGAGCCCGGTATGG
CTTCTGCCCCTCTTTTCGTTTTTGGGCGGTTAACCCATCGCGATGCTTCT
TGTGTCTCCTTTTCCTCCATCTTCTGTGTTTTTATTTCGCTGTGTGCCGC
ATCCGTTGCCGTTGCCCTTGTCTTCATGCCTGGGTTGTATTCCGCCGCTT
ATAGGGCTGCCTCTCTTGCGTAGCCTGCTGAGGAGCGTTTCATGTGGTTG
CCACCAGTGTTTTTCTTCTGCTTGTGATCTCGTTTGTGTTTTATGTTTCT
TGTTTATCGTGACCATGTCCTTTGCTGGCTGCTTTCTTGTCCGTTCTCTC
CTGTCTGCTTTCCCTGCTTATTTCCGAACGTATTTCCGTCTTGATTTGGT
TTGGTTTCGTCTTTCTTGTGACCCCGGCTGGATTTGTGGCGGATCAGTTG
ATCTGAGATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1198:217265..217825+

>mRNA_F-serratus_M_contig1198.1517.1 ID=mRNA_F-serratus_M_contig1198.1517.1|Name=mRNA_F-serratus_M_contig1198.1517.1|organism=Fucus serratus male|type=CDS|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig1198:217265..217825+ (Fucus serratus male)
ATGCTTCTTGTGTCTCCTTTTCCTCCATCTTCTGTGTTTTTATTTCGCTG
TGTGCCGCATCCGTTGCCGTTGCCCTTGTCTTCATGCCTGGGTTGTATTC
CGCCGCTTATAGGGCTGCCTCTCTTGCGTAGCCTGCTGAGGAGCGTTTCA
TGTGGTTGCCACCAGTGTTTTTCTTCTGCTTGTGATCTCGTTTGTGTTTT
ATGTTTCTTGTTTATCGTGACCATGTCCTTTGCTGGCTGCTTTCTTGTCC
GTTCTCTCCTGTCTGCTTTCCCTGCTTATTTCCGAACGTATTTCCGTCTT
GATTTGGTTTGGTTTCGTCTTTCTTGTGACCCCGGCTGGATTTGTGGCGG
ATCAGTTGATCTGAGATAAATGCTTCTTGTGTCTCCTTTTCCTCCATCTT
CTGTGTTTTTATTTCGCTGTGTGCCGCATCCGTTGCCGTTGCCCTTGTCT
TCATGCCTGGGTTGTATTCCGCCGCTTATAGGGCTGCCTCTCTTGCGTAG
CCTGCTGAGGAGCGTTTCATGTGGTTGCCACCAGTGTTTTTCTTCTGCTT
GTGATCTCGTTTGTGTTTTATGTTTCTTGTTTATCGTGACCATGTCCTTT
GCTGGCTGCTTTCTTGTCCGTTCTCTCCTGTCTGCTTTCCCTGCTTATTT
CCGAACGTATTTCCGTCTTGATTTGGTTTGGTTTCGTCTTTCTTGTGACC
CCGGCTGGATTTGTGGCGGATCAGTTGATCTGAGATAA
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