mRNA_F-serratus_M_contig1197.1505.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1197.1505.1
Unique NamemRNA_F-serratus_M_contig1197.1505.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1197.1505.1 vs. uniprot
Match: A0A6H5K8F6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F6_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.210e-23
Identity = 66/154 (42.86%), Postives = 87/154 (56.49%), Query Frame = 1 
Query:    1 PEVRCYASCLLRGAVDALRQSGWEFSVQCEQCSEWFHGLCIGFREESAVPDLWLCQACRSLPPQ-ALDQHSTRGRGSNVSGVRRGTFSSRGRGRVRGRAQGSGPSAGQDRPRHPVPGQDGG--AQEVGDGTTTSQSRNTLALRRSVSTPVEEAG 453
            PEV C+  CL+R  VDA++Q GWEFSVQCEQCS W+HGLC+GFR+E  +PDLW+C+ CR    Q  LD  +     + V+  R  T SS   G  RGR + S PSA  DR      GQ+G    + VG      +  N++     +S  V + G
Sbjct:  733 PEVACHVGCLVRRGVDAIQQ-GWEFSVQCEQCSTWYHGLCVGFRQEWEIPDLWICRPCRGESYQITLDPDAITEPAAIVARSR--TSSSSNHGSTRGR-RASAPSASHDRLPPSGSGQEGSEPGEVVGSRGQVPEQVNSIGDAPRISRSVSDGG 882
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BLAST of mRNA_F-serratus_M_contig1197.1505.1 vs. uniprot
Match: D7G8F9_ECTSI (Splicing factor, arginine/serine-rich 2,rnap interacting protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F9_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.110e-22
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 1 
Query:    1 PEVRCYASCLLRGAVDALRQSGWEFSVQCEQCSEWFHGLCIGFREESAVPDLWLCQACR------SLPPQALDQHSTR-GRGSNVSGVRRGTFSSRGRGRVRGRAQGSGPSAGQDRPRHPVPGQD 354
            PEV C+  CL+R  VDA++Q GWEFSVQCEQCS W+HGLC+GFR+E  +PDLW+C+ CR      +L P A+ + +    RG   SG   G+         RGR + S PSA  DR    V GQ+
Sbjct:  823 PEVACHVGCLVRRGVDAIQQ-GWEFSVQCEQCSTWYHGLCVGFRQEWEIPDLWICRPCRGESYQITLDPDAITEPAAIVARGRTSSGSNHGS--------TRGR-RASPPSASHDRLPPSVSGQE 937
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BLAST of mRNA_F-serratus_M_contig1197.1505.1 vs. uniprot
Match: S9PQW5_SCHOY (Histone deacetylase complex subunit Cti6 n=1 Tax=Schizosaccharomyces octosporus (strain yFS286) TaxID=483514 RepID=S9PQW5_SCHOY)

HSP 1 Score: 58.5 bits (140), Expect = 4.560e-7
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   79 VQCEQCSEWFHGLCIGFREESAVPDLWLCQACRSLPPQALDQHSTRGRGSNVS 237
            +QC+QCS W HG C+GF+EES VPD++ C+ CR   P+ L +   RGRG   S
Sbjct:   68 IQCDQCSVWQHGHCVGFQEESDVPDVYFCEVCR---PE-LHKLYQRGRGPKQS 116
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BLAST of mRNA_F-serratus_M_contig1197.1505.1 vs. uniprot
Match: A0A7D8V187_9TREE (SET domain-containing protein n=1 Tax=Vanrija humicola TaxID=5417 RepID=A0A7D8V187_9TREE)

HSP 1 Score: 58.5 bits (140), Expect = 5.380e-7
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   73 FSVQCEQCSEWFHGLCIGFREESAVPDLWLCQACRSLP--PQA 195
            F++QCE C+ W HGLC G+R+ES+VP+ + C+ C   P  PQA
Sbjct:   20 FTIQCEGCNAWEHGLCFGYRDESSVPETYFCELCEPRPVDPQA 62
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BLAST of mRNA_F-serratus_M_contig1197.1505.1 vs. uniprot
Match: A0A2H3J8F8_WOLCO (PHD domain-containing protein n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3J8F8_WOLCO)

HSP 1 Score: 58.2 bits (139), Expect = 6.690e-7
Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:   25 CLLRGAVDALRQSGWEFSVQCEQCSEWFHGLCIGFREESAVPDLWLCQACR-SLPPQALDQHSTRGRGSNVS 237
            C+ R   D    S  EF  QCE CS W HG C+GF + S +P+ + C+ CR  L P  L +H+ R R S+ +
Sbjct:  142 CICRDEED----SQGEFMAQCEMCSAWQHGQCMGFTDISELPNHYYCEQCRPDLYPDLLKKHAKRARQSSTN 209
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BLAST of mRNA_F-serratus_M_contig1197.1505.1 vs. uniprot
Match: A0A5M6BXP7_9TREE (SET domain-containing protein n=1 Tax=Kwoniella shandongensis TaxID=1734106 RepID=A0A5M6BXP7_9TREE)

HSP 1 Score: 57.4 bits (137), Expect = 1.360e-6
Identity = 18/42 (42.86%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   73 FSVQCEQCSEWFHGLCIGFREESAVPDLWLCQACRSLPPQAL 198
            F++QCE+C  W HG+C G+ +E++ PD + C+ CR  P  A+
Sbjct:  208 FTIQCEECGAWEHGMCFGYLDEASAPDTYFCELCRPRPVDAV 249
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BLAST of mRNA_F-serratus_M_contig1197.1505.1 vs. uniprot
Match: S9VW93_SCHCR (Histone deacetylase complex subunit Cti6 n=1 Tax=Schizosaccharomyces cryophilus (strain OY26 / ATCC MYA-4695 / CBS 11777 / NBRC 106824 / NRRL Y48691) TaxID=653667 RepID=S9VW93_SCHCR)

HSP 1 Score: 56.2 bits (134), Expect = 2.920e-6
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   79 VQCEQCSEWFHGLCIGFREESAVPDLWLCQACRSLPPQALDQHSTRGRGSNVS 237
            +QC+QCS W HG C+GF++ES VPD++ C+ CR   P+ L +   RGRG   S
Sbjct:   68 IQCDQCSVWQHGHCVGFQKESDVPDVYYCEICR---PE-LHKIYQRGRGPKQS 116
[Close]
BLAST of mRNA_F-serratus_M_contig1197.1505.1 vs. uniprot
Match: K1W827_TRIAC (Histone deacetylation-related protein n=1 Tax=Trichosporon asahii var. asahii (strain CBS 8904) TaxID=1220162 RepID=K1W827_TRIAC)

HSP 1 Score: 54.7 bits (130), Expect = 1.150e-5
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   73 FSVQCEQCSEWFHGLCIGFREESAVPDLWLCQACRSLPPQALDQHSTR 216
            F++QCE C+ W HGLC G+++E++VPD + C+ C    P+ +D    R
Sbjct:  197 FTIQCEGCNAWEHGLCFGYQDEASVPDTYFCELCM---PRKVDADRAR 241
[Close]
BLAST of mRNA_F-serratus_M_contig1197.1505.1 vs. uniprot
Match: A0A1E3PCG0_9ASCO (Glutamate--cysteine ligase n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PCG0_9ASCO)

HSP 1 Score: 54.7 bits (130), Expect = 1.150e-5
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:   79 VQCEQCSEWFHGLCIGFREESAVPDLWLCQACR 177
            +QCE C  W HG C+GF +ES+VPD++ C+ CR
Sbjct:   86 IQCETCDVWQHGFCVGFYQESSVPDVYFCEKCR 118
[Close]
BLAST of mRNA_F-serratus_M_contig1197.1505.1 vs. uniprot
Match: A0A1B9H6D8_9TREE (Uncharacterized protein n=2 Tax=Kwoniella heveanensis TaxID=89924 RepID=A0A1B9H6D8_9TREE)

HSP 1 Score: 54.7 bits (130), Expect = 1.170e-5
Identity = 19/42 (45.24%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:   73 FSVQCEQCSEWFHGLCIGFREESAVPDLWLCQACRSLPPQAL 198
            F++QCE C  W HGLC G+ +ES  P+ + C+ CR  P  A+
Sbjct:  193 FTIQCEGCGAWEHGLCFGYMDESQAPESYFCELCRPRPFDAV 234
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1197.1505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5K8F6_9PHAE3.210e-2342.86RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G8F9_ECTSI1.110e-2247.20Splicing factor, arginine/serine-rich 2,rnap inter... [more]
S9PQW5_SCHOY4.560e-750.94Histone deacetylase complex subunit Cti6 n=1 Tax=S... [more]
A0A7D8V187_9TREE5.380e-751.16SET domain-containing protein n=1 Tax=Vanrija humi... [more]
A0A2H3J8F8_WOLCO6.690e-740.28PHD domain-containing protein n=1 Tax=Wolfiporia c... [more]
A0A5M6BXP7_9TREE1.360e-642.86SET domain-containing protein n=1 Tax=Kwoniella sh... [more]
S9VW93_SCHCR2.920e-649.06Histone deacetylase complex subunit Cti6 n=1 Tax=S... [more]
K1W827_TRIAC1.150e-541.67Histone deacetylation-related protein n=1 Tax=Tric... [more]
A0A1E3PCG0_9ASCO1.150e-554.55Glutamate--cysteine ligase n=1 Tax=Nadsonia fulves... [more]
A0A1B9H6D8_9TREE1.170e-545.24Uncharacterized protein n=2 Tax=Kwoniella heveanen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1197contigF-serratus_M_contig1197:130312..131103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue8.7e-20
Seed eggNOG ortholog2880.D7G8F9
KEGG koko:K10631
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA topoisomerase binding
EggNOG OGsKOG4430@1,KOG4430@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko04121
Exons2
Model size482
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929094.693251-CDS-F-serratus_M_contig1197:130313..1307091622929094.693251-CDS-F-serratus_M_contig1197:130313..130709Fucus serratus maleCDSF-serratus_M_contig1197 130314..130709 -
1690962702.3838716-CDS-F-serratus_M_contig1197:130313..1307091690962702.3838716-CDS-F-serratus_M_contig1197:130313..130709Fucus serratus maleCDSF-serratus_M_contig1197 130314..130709 -
1622929094.7050428-CDS-F-serratus_M_contig1197:131019..1311031622929094.7050428-CDS-F-serratus_M_contig1197:131019..131103Fucus serratus maleCDSF-serratus_M_contig1197 131020..131103 -
1690962702.3997362-CDS-F-serratus_M_contig1197:131019..1311031690962702.3997362-CDS-F-serratus_M_contig1197:131019..131103Fucus serratus maleCDSF-serratus_M_contig1197 131020..131103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1197.1505.1prot_F-serratus_M_contig1197.1505.1Fucus serratus malepolypeptideF-serratus_M_contig1197 130314..131103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1197.1505.1

>prot_F-serratus_M_contig1197.1505.1 ID=prot_F-serratus_M_contig1197.1505.1|Name=mRNA_F-serratus_M_contig1197.1505.1|organism=Fucus serratus male|type=polypeptide|length=160bp
PEVRCYASCLLRGAVDALRQSGWEFSVQCEQCSEWFHGLCIGFREESAVP
DLWLCQACRSLPPQALDQHSTRGRGSNVSGVRRGTFSSRGRGRVRGRAQG
SGPSAGQDRPRHPVPGQDGGAQEVGDGTTTSQSRNTLALRRSVSTPVEEA
GSACPQQVLP
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mRNA from alignment at F-serratus_M_contig1197:130312..131103-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1197.1505.1 ID=mRNA_F-serratus_M_contig1197.1505.1|Name=mRNA_F-serratus_M_contig1197.1505.1|organism=Fucus serratus male|type=mRNA|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig1197:130312..131103- (Fucus serratus male)
CCGGAAGTGAGATGCTATGCCTCTTGCCTACTCCGTGGCGCCGTGGATGC
TTTGCGGCAGTCGGGCTGGGAATTCTCTGTGCAGGTAAAGCTTCTATGAG
ACTAGTAAAACTATCGGCCACGATTTCGTTTTCGGTTCAGTCGGAGACTA
GCTCTAGTGCTTTACTCATCAGGGATAGTGGCTGGCGGAGCAAATGATTT
GCGCTCTTGCACTACAAATGGCCATGAACAGTAGACTTTCACCTCATTAT
TCGGAAGAAACTCACTGAAAAGTACATGCCAGGGGATGCCATTATACGAG
AGGGGCGCGGCACCAACCCGCTTTAATGATCTTTTACGCTCTTATGAAAG
TAATGTGCACTTGCTCATTGTTGCTCTATCTGATTACTTCCCAGTGCGAG
CAATGCTCTGAGTGGTTTCACGGTCTCTGCATCGGATTCCGCGAGGAGTC
AGCCGTGCCAGACCTCTGGCTTTGCCAGGCATGCAGAAGTTTGCCACCTC
AAGCACTTGACCAACACTCGACAAGAGGGCGGGGTTCTAACGTATCAGGC
GTTCGTCGCGGGACATTCTCGAGCAGAGGGCGCGGGCGCGTCCGCGGTAG
GGCACAGGGCAGTGGACCTTCTGCTGGGCAAGACCGTCCCCGGCACCCGG
TTCCGGGCCAAGATGGCGGTGCGCAAGAAGTCGGAGACGGTACAACAACG
AGTCAAAGTAGGAACACGTTAGCCCTACGGCGATCGGTTAGCACTCCTGT
TGAGGAGGCCGGCTCGGCCTGTCCGCAGCAGGTACTTCCTAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1197:130312..131103-

>mRNA_F-serratus_M_contig1197.1505.1 ID=mRNA_F-serratus_M_contig1197.1505.1|Name=mRNA_F-serratus_M_contig1197.1505.1|organism=Fucus serratus male|type=CDS|length=960bp|location=Sequence derived from alignment at F-serratus_M_contig1197:130312..131103- (Fucus serratus male)
CCGGAAGTGAGATGCTATGCCTCTTGCCTACTCCGTGGCGCCGTGGATGC
TTTGCGGCAGTCGGGCTGGGAATTCTCTGTGCAGCCGGAAGTGAGATGCT
ATGCCTCTTGCCTACTCCGTGGCGCCGTGGATGCTTTGCGGCAGTCGGGC
TGGGAATTCTCTGTGCAGTGCGAGCAATGCTCTGAGTGGTTTCACGGTCT
CTGCATCGGATTCCGCGAGGAGTCAGCCGTGCCAGACCTCTGGCTTTGCC
AGGCATGCAGAAGTTTGCCACCTCAAGCACTTGACCAACACTCGACAAGA
GGGCGGGGTTCTAACGTATCAGGCGTTCGTCGCGGGACATTCTCGAGCAG
AGGGCGCGGGCGCGTCCGCGGTAGGGCACAGGGCAGTGGACCTTCTGCTG
GGCAAGACCGTCCCCGGCACCCGGTTCCGGGCCAAGATGGCGGTGCGCAA
GAAGTCGGAGACGGTACAACAACGAGTCAAAGTAGGAACACGTTAGCCCT
ACGGCGATCGGTTAGCACTCCTGTTGAGGAGGCCGGCTCGGCCTGTCCGC
AGCAGGTACTTCCTTGCGAGCAATGCTCTGAGTGGTTTCACGGTCTCTGC
ATCGGATTCCGCGAGGAGTCAGCCGTGCCAGACCTCTGGCTTTGCCAGGC
ATGCAGAAGTTTGCCACCTCAAGCACTTGACCAACACTCGACAAGAGGGC
GGGGTTCTAACGTATCAGGCGTTCGTCGCGGGACATTCTCGAGCAGAGGG
CGCGGGCGCGTCCGCGGTAGGGCACAGGGCAGTGGACCTTCTGCTGGGCA
AGACCGTCCCCGGCACCCGGTTCCGGGCCAAGATGGCGGTGCGCAAGAAG
TCGGAGACGGTACAACAACGAGTCAAAGTAGGAACACGTTAGCCCTACGG
CGATCGGTTAGCACTCCTGTTGAGGAGGCCGGCTCGGCCTGTCCGCAGCA
GGTACTTCCT
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