mRNA_F-serratus_M_contig1197.1502.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1197.1502.1
Unique NamemRNA_F-serratus_M_contig1197.1502.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1197.1502.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 1.010e-85
Identity = 186/359 (51.81%), Postives = 225/359 (62.67%), Query Frame = 1 
Query:  349 PTRAPRLYVGGNGLHLDVGQVVELSPDQTRYLMSVMRLREGSAVRIFDGFNGEYSAAVC---------------DVVGNSSKVRRGKTSRGT----QQVHLRVERLTRRQPSTSNAD----QQPEMPEIELIFAPIRKHRLKILVEKAVEVGASRLTPVLTTRTQAGA-ADQSALVKLGLTTAIEAAEQSERMTVPHVGVMAEP--LASILKEREVRQSNACQSDAAPSAAGGLMGDNIGSSTDDYRRKAGGQGNIQSPHVIFACKERDLDAPPLLDALAQWARLMRENRCP--------RPPLYPAFLVGPEGGFDREELDLLSASPVVHFVSLGSTVLRAETAALYALSCWSAFWAS 1323
            PTRAPR+Y+  NG +L VGQ V+L+P+QTRYL+SVMRLR+GS VR+FDG NGE+ AAV                + +G+    RRG+  R T    + V LRVE LTRRQP          +  + PEIEL+FAPIRK RLK+LVEKAVEVGASRLTPVLT RTQ GA +D S L +LG  TA+EAAEQ ERMTVP V   A P  LAS L+  E+RQS+ C                  SS     R  G  G++  P ++F CKERD+DAPPLL+ALA++ +   E R                AFL+GPEGGFD +E+  L+  P V FVSLG TVLRAETAA+YALS WSAFWAS
Sbjct:  140 PTRAPRVYL--NGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSSSTSSSSRLERSGEKIGSGRGGRRGRGKRSTVGADKVVELRVECLTRRQPGIGGGGDGEVEDVDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPV---ASPVTLASYLRSLELRQSS-CDL----------------SSIIGLARDRG--GDLSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEERRQDHVNSSDGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYALSSWSAFWAS 474
[Close]
BLAST of mRNA_F-serratus_M_contig1197.1502.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 3.090e-70
Identity = 161/322 (50.00%), Postives = 194/322 (60.25%), Query Frame = 1 
Query:  454 MRLREGSAVRIFDGFNGEYSAAVCDVVGNSSKVRR---------------GKTSRGTQQ--VHLRVERLTRRQPSTSNAD----QQPEMPEIELIFAPIRKHRLKILVEKAVEVGASRLTPVLTTRTQAGA-ADQSALVKLGLTTAIEAAEQSERMTVPHVGVMAEP--LASILKEREVRQSNACQSDAAPSAAGGLMGDNIGSSTDDYRRKAGGQGNIQSPHVIFACKERDLDAPPLLDALAQWARLMRENRCP--------RPPLYPAFLVGPEGGFDREELDLLSASPVVHFVSLGSTVLRAETAALYALSCWSAFWAS 1323
            MRLR+G+ VR+FDG NGE+ AAV     +SS++ R               GK S G  +  + LRVE LTRRQP          +  + PEIEL+FAPIRK RLK+LVEKAVEVGASRLTPVLT RTQ GA +D S L +LG  TA+EAAEQ ERMTVP    MA P  LAS L+  E+R S+ C                 GSS     R   G  ++  P ++F CKERD+DAPPLL+ALA++ +   E R                AFL+GPEGGFD +E+  L+  P V FVSLG TVLRAETAA+YALS WSAFWAS
Sbjct:    1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPP---MASPVTLASYLRSLELRHSS-CD----------------GSSIVGLARDRDGDRSL--PDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDNRNANAAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYALSSWSAFWAS 300
[Close]
BLAST of mRNA_F-serratus_M_contig1197.1502.1 vs. uniprot
Match: A0A835ZHN8_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN8_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.820e-37
Identity = 115/294 (39.12%), Postives = 154/294 (52.38%), Query Frame = 1 
Query:  454 MRLREGSAVRIFDGFNGEYSAAVCDVVGNSSKVRRGKTSRGTQQ-VHLRVERLTRRQPSTSNADQQPEMPEIELIFAPIRKHRLKILVEKAVEVGASRLTPVLTTRTQAGAADQSALVKLGLTTAIEAAEQSERMTVPHVGVMAEPLASILKEREVRQSNACQSDAAPSAAGGLMGDNIGSSTDDYRRKAGGQGNIQSPHV----IFACKERDLDAPPLLDALA--QWARLMRENRCPRPPLYPAFLVGPEGGFDREELDLLSASPVVHFVSLGSTVLRAETAALYALSCWSAF 1314
            MRLR+GS VR F+G +GEY   +    G+SS    GK  R  +  + L+VE+  R Q   S AD      ++ L+ API++ R+K+LVEKA E+G + + PVLT  TQ  A D     +L L  AIEAAEQ ER+++PH+   A PL  +L                                               PH     +F C+ER   +PPLL+ALA    AR +  +  P      AFLVGPEGGF  +E ++L+  P +  VSLG+TVLRAETAALYALSC+S+F
Sbjct:    1 MRLRDGSTVRAFNGRDGEYLCTLSQTDGSSSSKPAGKGRRSAKPALALQVEQQLRSQAEDSCADL-----DVWLLCAPIKRQRMKLLVEKATELGVTCIAPVLTAHTQE-ALDAEGTSRL-LPIAIEAAEQCERLSLPHLHPPA-PLPELLARWH-----------------------------------------SEPHTRARQLFVCQERSPQSPPLLEALAAASAARGVPSSAAPA-----AFLVGPEGGFSADEREMLAGLPWIQGVSLGATVLRAETAALYALSCYSSF 240
[Close]
BLAST of mRNA_F-serratus_M_contig1197.1502.1 vs. uniprot
Match: A0A7Y0HFA1_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Pacificispira spongiicola TaxID=2729598 RepID=A0A7Y0HFA1_9PROT)

HSP 1 Score: 120 bits (301), Expect = 1.500e-27
Identity = 104/306 (33.99%), Postives = 143/306 (46.73%), Query Frame = 1 
Query:  394 LDVGQVVELSPDQTRYLMSVMRLREGSAVRIFDGFNGEYSAAVCDVVGNSSKVRRGKTSRGTQQVHLRVERLTRRQPSTSNADQQPEMPEIELIFAPIRKHRLKILVEKAVEVGASRLTPVLTTRTQAGAADQSALVKLGLTTAIEAAEQSERMTVPHVGVMAEPLASILKEREVRQSNACQSDAAPSAAGGLMGDNIGSSTDDYRRKAGGQGNIQSPHVIFACKERDLDAPPLLDALAQWARLMRENRCPRPPLYPAFLVGPEGGFDREELDLLSASPVVHFVSLGSTVLRAETAALYALSCWSA 1311
            L  G+ VE  PDQ  YL  V+RL  G+ + +F+G +GE+ A V ++              G  +  LR E   R Q S+         P++ L FAP++K +   +V+KA E+G SRL P+LT RTQ+       L      TA+EAAEQ ER+ VP   V+ EP   I  +R +        D  P              TD                +++ C E   DA PL  A                P   AF+ GPEGGF ++ELDL+  SP+V  +SLG  +LRAETAA+ AL+ W A
Sbjct:   13 LQAGRPVEADPDQAHYLSRVLRLGAGAPLVLFNGRDGEWDAVVTEI--------------GKNRATLRPETQRRAQVSS---------PDVWLAFAPVKKTQTDFIVQKATELGVSRLIPILTDRTQSERVRTDRLTA----TAVEAAEQCERLDVP---VVVEP---IRLDRLI--------DTWP--------------TD---------------RMLYLCAEAG-DAQPLASAAK--------------PGPAAFVTGPEGGFSQQELDLMRRSPLVQPISLGPRILRAETAAMAALAVWQA 233
[Close]
BLAST of mRNA_F-serratus_M_contig1197.1502.1 vs. uniprot
Match: A0A4R3J6Z2_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Varunaivibrio sulfuroxidans TaxID=1773489 RepID=A0A4R3J6Z2_9PROT)

HSP 1 Score: 117 bits (292), Expect = 4.490e-26
Identity = 104/303 (34.32%), Postives = 143/303 (47.19%), Query Frame = 1 
Query:  394 LDVGQVVELSPDQTRYLMSVMRLREGSAVRIFDGFNGEYSAAVCDVVGNSSKVRRGKTSRGTQQVHLRVERLTRRQPSTSNADQQPEMPEIELIFAPIRKHRLKILVEKAVEVGASRLTPVLTTRTQAGAADQSALVKLGLTTAIEAAEQSERMTVPHVGVMAEPLASILKEREVRQSNACQSDAAPSAAGGLMGDNIGSSTDDYRRKAGGQGNIQSPHVIFACKERDLDAPPLLDALAQWARLMRENRCPRPPLYPAFLVGPEGGFDREELDLLSASPVVHFVSLGSTVLRAETAALYALSC 1302
            L  G  V L  +Q+ YL +VMR  + + V +F+G +GE+   +  +  +  +V             LR     RR+P+            + LIFAP++K RL  LVEK+VE+G SRL+PV+T  T  G  + + L       A EAAEQ ER+T+P V                          AP A   L+        D + R       + +P  +FA  ER L APP+  AL   A +             AFL+GPEGGF R+E+ LL  +P V  VSLG  +LRAETAAL AL+C
Sbjct:   21 LTAGARVALDHEQSHYLKNVMRAGKNAPVALFNGRDGEWLGELAALGKHHGEV-----------AILRQMHGQRREPN------------VRLIFAPLKKARLDFLVEKSVELGVSRLSPVITRHTDVGRVNVARL----RAQAREAAEQCERLTLPTVD-------------------------APIALAQLL--------DQWERLP-----VGAP-PLFAAVER-LSAPPIAQALQNVAEVQER----------AFLIGPEGGFSRDEVALLDKAPFVFPVSLGPRILRAETAALVALAC 246
[Close]
BLAST of mRNA_F-serratus_M_contig1197.1502.1 vs. uniprot
Match: A0A0F2R6G1_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rhodospirillaceae bacterium BRH_c57 TaxID=1629718 RepID=A0A0F2R6G1_9PROT)

HSP 1 Score: 116 bits (290), Expect = 5.900e-26
Identity = 108/306 (35.29%), Postives = 137/306 (44.77%), Query Frame = 1 
Query:  394 LDVGQVVELSPDQTRYLMSVMRLREGSAVRIFDGFNGEYSAAVCDVVGNSSKVRRGKTSRGTQQVHLRVERLTRRQPSTSNADQQPEMPEIELIFAPIRKHRLKILVEKAVEVGASRLTPVLTTRTQAGAADQSALVKLGLTTAIEAAEQSERMTVPHVGVMAEPLASILKEREVRQSNACQSDAAPSAAGGLMGDNIGSSTDDYRRKAGGQGNIQSPHVIFACKERDLDAPPLLDALAQWARLMRENRCPRPPLYPAFLVGPEGGFDREELDLLSASPVVHFVSLGSTVLRAETAALYALSCWSA 1311
            L  G  VEL+  Q  YL +VMR R G +V +F+G +GE+ A +  V    + +R G                 RR+P  S+       P++ L+FAP++K     +VEKA E+GA  L PVLT  T A   +   L      TAIEAAEQ ER+T+P                EVR       DAAP+    L G       D  RR             +F   E    AP            +    C   P   A L GPEGGF + ELDLLS +  V  V LG  +LRAETAAL AL+CW A
Sbjct:   14 LHAGANVELAAPQVHYLNTVMRARPGESVALFNGRDGEWLADLLLVTRKEAALRVG----------------ARRRPQGSD-------PDVWLLFAPLKKQTTDFVVEKATELGARVLWPVLTRHTNAARVNTERLTA----TAIEAAEQCERLTIP----------------EVR-------DAAPTLDAALAG------WDPSRR-------------LFVMDETGRGAP---------IHKVLGADCVGAPA--AILCGPEGGFAKSELDLLSQTTFVTAVGLGPRILRAETAALAALTCWQA 239
[Close]
BLAST of mRNA_F-serratus_M_contig1197.1502.1 vs. uniprot
Match: A0A2E4XSR1_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4XSR1_9PROT)

HSP 1 Score: 114 bits (285), Expect = 3.260e-25
Identity = 104/318 (32.70%), Postives = 145/318 (45.60%), Query Frame = 1 
Query:  364 RLYVGGNGLHLDVGQVVELSPDQTRYLMSVMRLREGSAVRIFDGFNGEYSAAVCDVVGNSSKVRRGKTSRGTQQVHLRVERLTRRQPSTSNADQQPEMPEIELIFAPIRKHRLKILVEKAVEVGASRLTPVLTTRTQAGA--ADQSALVKLGLTTAIEAAEQSERMTVPHVGVMAEPLASILKEREVRQSNACQSDAAPSAAGGLMGDNIGSSTDDYRRKAGGQGNIQSPHVIFACKERDLDAPPLLDALAQWARLMRENRCPRPPLYPAFLVGPEGGFDREELDLLSASPVVHFVSLGSTVLRAETAALYALSCWSA 1311
            RLYV      LD G+ V+LS +Q+ YL  V+RL  G+ V +F+G +GE+ A +         +RR   S G +         T+ +P  +        P++ L+FAPI++ RL +LV+KAVE+G SRL PVLT RT+     AD+        +  IEAAEQ ERMT+P + V   P+  +L +                                            +   +  C ER   A P+   L         +RC       A L GPEGGF   ELD       + FVSLG  +LRAETAA+ A++CW A
Sbjct:   10 RLYVD---QALDAGRSVDLSANQSHYLKHVLRLGPGAEVALFNGKDGEWRARI-------ETIRRNAGSLGVE---------TQIRPQITE-------PDLWLLFAPIKRARLDMLVQKAVELGVSRLVPVLTERTEVKRLNADRHR------SNLIEAAEQCERMTLPEI-VEPRPILDVLSD------------------------------------------FPTGRRLLVCAERG-HAAPINQILEDDTG--EADRC-------AILCGPEGGFAETELDAFQKLSFIRFVSLGPRILRAETAAISAVTCWQA 242
[Close]
BLAST of mRNA_F-serratus_M_contig1197.1502.1 vs. uniprot
Match: A0A259M1G2_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Hyphomonas sp. 34-62-18 TaxID=1970392 RepID=A0A259M1G2_9PROT)

HSP 1 Score: 113 bits (282), Expect = 8.290e-25
Identity = 103/319 (32.29%), Postives = 143/319 (44.83%), Query Frame = 1 
Query:  361 PRLYVGGNGLHLDVGQVVELSPDQTRYLMSVMRLREGSAVRIFDGFNGEYSAAVCDVVGNSSKVRRGKTSRGTQQVHLRVERLTRRQPSTSNADQQPEMPEIELIFAPIRKHRLKILVEKAVEVGASRLTPVLTTRTQAGAADQSALVKLGLTTAIEAAEQSERMTVPHVGVMAEPLASILKEREVRQSNACQSDAAPSAAGGLMGDNIGSSTDDYRRKAGGQGNIQSP--HVIFACKERDLDAPPLLDALAQWARLMRENRCPRPPLYPAFLVGPEGGFDREELDLLSASPVVHFVSLGSTVLRAETAALYALSCWSA 1311
            PRLYV      L    V+ L  +Q+ YL+ V+RL EG+ VR+F+G +GE+SAAV  V G  ++V                   TR+QP  + AD       + L+FAP++K +  +++EKA E+GA+R+ PVLT RTQ          K+    A+EAAEQ+ER+ +P +              E    +A      P  A  +  D  G   D+     GGQ     P   V+   K R                              A L GPEGGF   E   L    V + VSLG  +LRAETAA+ A++ W A
Sbjct:    5 PRLYVDAP---LAESGVIALDDEQSNYLLRVLRLEEGAPVRLFNGRDGEWSAAVRKVSGKRAEVIPAAQ--------------TRKQPEHAGAD-------LTLLFAPVKKDQTDLIIEKATELGAARMVPVLTERTQTRTVRTDRFRKI----ALEAAEQTERLGLPEIA-------------EAVSLDAALDGLEPGTAV-IFCDEAG---DEADAPWGGQTGRAGPMLEVVAGLKGRPA----------------------------AILTGPEGGFTPAERAFLRGRAVTYPVSLGPRILRAETAAISAMALWQA 250
[Close]
BLAST of mRNA_F-serratus_M_contig1197.1502.1 vs. uniprot
Match: A0A6A7KUY5_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KUY5_9PROT)

HSP 1 Score: 112 bits (281), Expect = 1.190e-24
Identity = 108/315 (34.29%), Postives = 139/315 (44.13%), Query Frame = 1 
Query:  361 PRLYVGGNGLHLDVGQVVELSPDQTRYLMSVMRLREGSAVRIFDGFNGEYSAAVCDVVGNSSKVRRGKTSRGTQQVHLRVERLTRRQPSTSNADQQPEMPEIELIFAPIRKHRLKILVEKAVEVGASRLTPVLTTRTQAGAADQSALVKLGLTTAIEAAEQSERMTVPHVGVMAEPLASILKEREVRQSNACQSDAAPSAAGGLMGDNIGSSTDDYRRKAGGQGNIQSPHVIFACKERDLDAPPLLDALAQWARLMRENRCPRPPLYPAFLVGPEGGFDREELDLLSASPVVHFVSLGSTVLRAETAALYALSCW 1305
            PRLYV  +   LD G+ V L+  Q  YL +VMRL  G+AV +F+G +GE+SA +     N+  V  G+  R TQ V                       P++ L+FAPI++  L  LV+KAVE+G SRL PV T  T     +   L       A+EAAEQ  R+++P VG +                      A  +A  G  G          RR             +  C E    A P+ D LA       E R        A + GPEGGF   ELD L   P V  VSLG  +LRAETAAL  L+CW
Sbjct:    7 PRLYVTDD---LDAGRTVGLAAGQAHYLKNVMRLAPGAAVVLFNGRDGEWSARIDAFGRNACAVSVGQRMR-TQAVE----------------------PDVWLLFAPIKRAPLDFLVQKAVELGVSRLQPVNTGHTDVSRVNTDRL----RANAMEAAEQCGRLSLPEVGDLV---------------------AFDAALDGWPGG---------RR-------------LLVCAESG-PARPIGDVLA-------ETRASEGGRAAALMTGPEGGFTTSELDALRKLPFVTPVSLGPRILRAETAALAVLACW 240
[Close]
BLAST of mRNA_F-serratus_M_contig1197.1502.1 vs. uniprot
Match: A0A2E7V032_9RICK (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7V032_9RICK)

HSP 1 Score: 110 bits (275), Expect = 8.530e-24
Identity = 99/308 (32.14%), Postives = 135/308 (43.83%), Query Frame = 1 
Query:  394 LDVGQVVELSPDQTRYLMSVMRLREGSAVRIFDGFNGEYSAAVCDVVGNSSKVRRGKTSRGTQQVHLRVERLTRRQPSTSNADQQPEMPEIELIFAPIRKHRLKILVEKAVEVGASRLTPVLTTRTQAGAADQSALVKLGLT----TAIEAAEQSERMTVPHVGVMAEPLASILKEREVRQSNACQSDAAPSAAGGLMGDNIGSSTDDYRRKAGGQGNIQSPHVIFACKERDLDAPPLLDALAQWARLMRENRCPRPPLYPAFLVGPEGGFDREELDLLSASPVVHFVSLGSTVLRAETAALYALSCW 1305
            LD GQ + LS +Q+ YL +V+RL   + V +F+G +GE+ A + D V   S             + L V RL R Q            PE+ L+FAPI++ RL I+V+KAVE+G SRL P+ T RT+        + +L L       +EAAEQ ER+T+P +                           P A   ++                   N      I  C ER  DA P+   L +   L    R        A L GPEGGF   ELD       + FVSLG  +LRAETA + A++CW
Sbjct:   17 LDTGQFINLSGNQSHYLKNVLRLAPDAEVALFNGKDGEWLARI-DRVSQRS-------------ISLEVRRLLRAQAVE---------PELWLMFAPIKRARLDIIVQKAVELGVSRLIPIFTERTE--------VKRLNLVRHRANIVEAAEQCERLTLPEI-------------------------VEPRAIFDVL------------------ANFPGDGCILVCVERG-DADPIHKVLQE--DLASVGRF-------AILCGPEGGFSDTELDAFGKLSFIRFVSLGPRILRAETAVISAVTCW 240
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1197.1502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9Y9_9PHAE1.010e-8551.8116S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
D7G8G1_ECTSI3.090e-7050.0016S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A835ZHN8_9STRA3.820e-3739.1216S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A7Y0HFA1_9PROT1.500e-2733.99Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A4R3J6Z2_9PROT4.490e-2634.32Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A0F2R6G1_9PROT5.900e-2635.29Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A2E4XSR1_9PROT3.260e-2532.70Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A259M1G2_9PROT8.290e-2532.29Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A6A7KUY5_9PROT1.190e-2434.29Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A2E7V032_9RICK8.530e-2432.14Ribosomal RNA small subunit methyltransferase E n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1197contigF-serratus_M_contig1197:109660..121385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.6
Seed ortholog evalue2.8e-60
Seed eggNOG ortholog2880.D7G8G1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.RNA methyltransferase
EggNOG OGs2SA8N@2759,COG1385@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1481
Cds size1317
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1197.1502.1prot_F-serratus_M_contig1197.1502.1Fucus serratus malepolypeptideF-serratus_M_contig1197 109744..121305 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929093.7888403-UTR-F-serratus_M_contig1197:109659..1097431622929093.7888403-UTR-F-serratus_M_contig1197:109659..109743Fucus serratus maleUTRF-serratus_M_contig1197 109660..109743 +
1690962702.2682805-UTR-F-serratus_M_contig1197:109659..1097431690962702.2682805-UTR-F-serratus_M_contig1197:109659..109743Fucus serratus maleUTRF-serratus_M_contig1197 109660..109743 +
1622929093.8222938-UTR-F-serratus_M_contig1197:121305..1213851622929093.8222938-UTR-F-serratus_M_contig1197:121305..121385Fucus serratus maleUTRF-serratus_M_contig1197 121306..121385 +
1690962702.297089-UTR-F-serratus_M_contig1197:121305..1213851690962702.297089-UTR-F-serratus_M_contig1197:121305..121385Fucus serratus maleUTRF-serratus_M_contig1197 121306..121385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929093.8026626-CDS-F-serratus_M_contig1197:109743..1098871622929093.8026626-CDS-F-serratus_M_contig1197:109743..109887Fucus serratus maleCDSF-serratus_M_contig1197 109744..109887 +
1690962702.2798097-CDS-F-serratus_M_contig1197:109743..1098871690962702.2798097-CDS-F-serratus_M_contig1197:109743..109887Fucus serratus maleCDSF-serratus_M_contig1197 109744..109887 +
1622929093.8128161-CDS-F-serratus_M_contig1197:120132..1213051622929093.8128161-CDS-F-serratus_M_contig1197:120132..121305Fucus serratus maleCDSF-serratus_M_contig1197 120133..121305 +
1690962702.28795-CDS-F-serratus_M_contig1197:120132..1213051690962702.28795-CDS-F-serratus_M_contig1197:120132..121305Fucus serratus maleCDSF-serratus_M_contig1197 120133..121305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1197.1502.1

>prot_F-serratus_M_contig1197.1502.1 ID=prot_F-serratus_M_contig1197.1502.1|Name=mRNA_F-serratus_M_contig1197.1502.1|organism=Fucus serratus male|type=polypeptide|length=439bp
MAGYRWCLLLSLWTFSMRECNVFGLVAPSTWRARARPHLLSTLHRHDHQI
ASPSWTSSAETAIPSADGASPSQRSLVLLGNGAEGAGSPTRAPRLYVGGN
GLHLDVGQVVELSPDQTRYLMSVMRLREGSAVRIFDGFNGEYSAAVCDVV
GNSSKVRRGKTSRGTQQVHLRVERLTRRQPSTSNADQQPEMPEIELIFAP
IRKHRLKILVEKAVEVGASRLTPVLTTRTQAGAADQSALVKLGLTTAIEA
AEQSERMTVPHVGVMAEPLASILKEREVRQSNACQSDAAPSAAGGLMGDN
IGSSTDDYRRKAGGQGNIQSPHVIFACKERDLDAPPLLDALAQWARLMRE
NRCPRPPLYPAFLVGPEGGFDREELDLLSASPVVHFVSLGSTVLRAETAA
LYALSCWSAFWASSRALERASRALSDDIGESLENREKW*
back to top

mRNA from alignment at F-serratus_M_contig1197:109660..121385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1197.1502.1 ID=mRNA_F-serratus_M_contig1197.1502.1|Name=mRNA_F-serratus_M_contig1197.1502.1|organism=Fucus serratus male|type=mRNA|length=11726bp|location=Sequence derived from alignment at F-serratus_M_contig1197:109660..121385+ (Fucus serratus male)
CCGTTTTAAAGCTTGGAGCAAGTGCATCACCGCTCTCCAAAGGCTAAGCT
TAACAAGTCTCGGATAATCAGGAGTATTTTTTTTATGGCGGGCTATAGAT
GGTGCTTACTGCTCAGCTTATGGACGTTTTCCATGCGAGAGTGTAACGTT
TTCGGTCTCGTGGCGCCAAGCACGTGGCGAGCTCGAGCTCGACCTCATCT
CCTCTCTACGCTACATAGACACGACCACGTGAGTTTCTTAGACGCCTCAA
TATATCCTCGGCTGATGCTCGTTCTCTTCAGAAATGTTTTCCTGGTTGTT
CGCGGGGATATTGCAATGATTTTGGGGTTCCAGGCGCATTATGCTCCTAC
CCGTATCGTACTTCCATTGTATATACAGTATACAAACAGTACTTCCGGTC
GCCCCGATCACGTTCAGTTGGTAACCTCGAAACCTTCTGATGTTGGGACG
TGAGTTCGAATCTCGGTGCAGTCACACGAACTGGGTTTTTTCCTCACAAA
ACAAAACAAAACAAAACAAAAACATGCCCAACAACGTGATGTGGAGAATG
ATTAATTCGTGGGTACACAAAGTTTGACCTCACGATCGACGAGGGAAAGG
GACGGCTGAATCCTTCTTGCGATAAAAATGAAGGCAAGCACCGCAGAAGG
AAGGTAGAGAAATCCTGTGTGACCCTCCTCCTGTGTGACCCCGCTAGTGC
GTCCACAAGTCCGACGTCCAGAATAAATGGCATGACAACACACACCCCCT
TGGGAGGATCAATGCGAGTGACAAAGAGTGACTAGGATGACAGGGCCGGA
TTGCGCGGTTATGTGCAATTTAATAAAAACACACACGCACACACACATAA
GTATGCTTTCCCCCTTTAGGGGGGATCAATGCGAGTGGCATGTGGCATAA
AATGACTATTTAGGACGACAGGGCCGGATTGCGCGGTTATGTGCAATTTA
ATACCGTAAAGGTTTTCGTAATAAGTATCATTGATCCCCCCTCGGGAGGA
TCAATGCGAGTGGCATAGAATGACTAGGATGACAGGGCCGGATTGCGTGG
TTATGTGCAATTTAATAAATACACACACACACACACACACACACACACAC
ACACACATACACTTTGTAATAAGTATCATTGATCCCCCCCCGGGAGGATC
AATGCGAGTGGCATAGAACGACTAGGATGACAGGGCCGGATTGCGCGGTT
ATGCGCAATTTAATAAATACACACACACACACACACACACACACAGGCAT
ATAATGACTATTAATAGGATGACCGGGCCGGAGTGCGCGGTTATGTACAA
TTCAATAAATCAATTGATAGTTATCATTAGCTGATTTGTTGTTAGTTCAC
GCCTTCAGCGTATTGTAGTAGTAGTAGTAGTAGTATTCTTAATTAAGATT
ATCTAGTAATACGCGGTTGCCAATTTGGTCACAAAGAGGTAGAAAGGTCA
ACGGGGCACATCATGGTGTTCTACTCAGACCAGTAGGGATCCAAATCGAC
AAAAAGCGCAATGACACCGACCAAACAAAACGGTTCATCAAACATCCTTA
CTCCATATCGAGATCCTTGCAACTGAAGAAACTACGGTGACACAACAAGT
CAGCCATAGACCTACCTAATGTCAATCCCGCTTGTGGTCACTAAGAGGTA
CCAAGGTCAACGTGTCACATCGTGGTGACAAGCCGCTACTGAGACCAACA
GGGATCCAAATCGCGACAAAAAGTTATGCGACTCTGCAAGCAATGGCACC
GACCAATATCTAAACGGTTCATCAAACCTCCTTACTCCACATCGAGAGCA
GCCTCGATCGATTCGGATTGTTATCGCCTACCAACGACCAGCGTTCTCAG
CAACAAAGTAGACAAATTACGCTCCAACCAGTTTTGATCAACAAGTGTCC
AAGTATCTCAAGGCCACACAATCGTACAAAAATAAGGGAAATTAAAATAC
CGAGGTCCATGGTGGTGGAGGCCTTGAGCAGGTGAAGCCGGCCCACGAGC
CAGCATTCAGCCGTTCAAAGCACTTTGCATCCTTGAAGAAGCCCCACGAA
TCTTTCCCGTTCGCCGCTCCTTGCGAAGAAAAAAGACCATGGTCAGACAT
CAGCCTTTCCTTCAGAAACCTCCCGGTTCACGCCTTTGATTCTCGCGCAC
AGGGGTTCAGCCCTCCCCTGGCTCGTCAAAGATCGAGCTGCCCTCCGCCT
TCGCCGAATCCGGTGCGTACCCACCCGATAGAGCACTACCAGGCTCTCAG
CGACGGTGCTCCCTGCCTCTCGCGTGCCGCCACCTCCCGAAGGGCACCAA
ATTGGAGCTCGGAAGGGGCGCACACCTGGGAACACCATCCTCAGCCCACC
ATACCGCCTCCGCGTCTTAACCGACAGGCCGAATCGCGAAGGCAGCCAGT
TGACTGCATCTCTCGAGAGTGAGCCCGGCCCTACATCCGCCGGAAAGACC
CTCCCACACTCATAGCCCGAAACCAGGTTTCGCAGGGAGAGGGTACGAGT
ATAGTCATCAATATATAGACTATTACTGAAGTAGTAGCAGACTTGGCATC
AACCGTTATGTTATCAATCCTGCTCGTGGTCAGCTGAACAGGGAAATTGA
AATTTCCCTGTCCCTGTTCGTGCCCGAGAATTTGGTCTCGCGAGACAGGT
TTCGCCGTCCCGTCCCGCGTCAGCCCGCTCCTTCTCCACACCCAGTTTGT
ATTAGGCGCTTACCCACGCCTTCCTCTCTTTCACCCCGCTTCCTGCGACG
GCAGTAGTCCATACCGTCAACCGCCAGCATCGATAGGGTCAGCCCCGAGT
TTATTAGGTCACTCAATTGCCTATCGACGACTTTCACCCCCAAGAGTCCG
GCGGTTCAGGGCCAGTAGTCCTCCTCAAGGTAGCTCGAGTAACGAACGGG
TGCTGCCGATTATGGTAACACCACGTGGACCAATTTTTGTGGACCCCTCT
TTCCCCACAAGCACGATTGGTAGAGAGGTAAGTGGACATACGCGATACAG
ACAGTAAGTATCGTAGCTGAGTTTGTCGCACTTTTTATCCTGTCGTCTTT
TGATAAAAAAATGTGGTACGAAGCAGAGATGCGTTCAGATTTCCTTGTTT
GGGCGTACCACGTACTGGTAGGCTTCAACAAACAGGATTAATAAAGTACA
AACAGTAGTATGCACCTGGGATTCCATCCAACTTGTTATATTACTGTATA
CTGCTGTACAGCAGCAGGAGATCTCTCGTAGTATAGACTTGTACGAAGTA
ATACAAACAGTACTCGTGCGGACAAATTATGCACTTTACGAGAATCGGCA
CAAGAGTCGAGAGAATATCTCAAGCCTACGCTTGTATGTTCAAATTGTTT
TAGTATCACGAAGCAATTAGATGTCGAGTTGAGTTATCTAGCACGAAGAA
GCGTACAAACGGATCAATTAGCAACAGCTACTAATAGTCGTGTCCGGATA
CGCTTATCAGCAACAGCTTTTTTTTTACGCAGATAGATGATGCTTGCCTT
GCGTAAGCAGTCTCCGCGGGCGTACAGACTCAATTCATTCATCTATTGTA
TGCTGCACAAACTTCGTATCCTTCGTTCATGAAGTTTGGGGTGAAACTGT
GTCTCACGGAAGAACTCGTGCGCTGAAGCGTGCTACTCCCACCAACTAGG
CTTCGCTGGAAAATTCCCCCTTGTCTCCAGGAGGCGAACAATATCTTGCC
ACGATTCGAGTCAACAGCAGACCGCTGCCAGTGGTGACCACAAACTATTG
CGATCTGGCCAGTTCATGAGTCTCCGCATCCGTTCGCTTTTCTATACGAA
ATTTCCAAGCCGAAGAGGCAGCCACCAGTCCCACCTGCGGTACCTCAGTA
CTGCCCATCCAAAGTGTGGTCCTAGTGAATCTACCACGTATCTCCCCGGT
TCACACCTACATTTTTTTACCGCAACTCCCGTACGCCGTTCTTCAACTCT
TCTTACACGTCATCCAAAAATATTTTGTACAGTACTTTGCTATTTCTTGT
CTTCTTGCGATATTCTGCTTCAATACAGAAGTTTTCCCGACATGATACTG
ACTGTACTCTTCTGCTCATGATGGTGCATTAATAACTTGTTTAGCCACCG
CGGCGCGGTGGTCTGTGCAACGTAAGGATCAAAAAGTCTCGCCCGTTTAG
GGGCTGATAATAAAAATAAACCTTTTTTTGACGTTTCGCAACCCAAGCTT
TTTGGGTACTACCAAACCCAGTATTTTCTGGTATTGAAATAAAGGGACTC
CGTTAAAATATAAGTACGAGCTTTGAAACGCAACAACGTTCGGGACGAAG
TAGGTACTTTGTTTTTGTTTATCTAGTTGAACCCGTGAGGGATTGGCACG
AATGCGTCAATATCATCACTACAGGAGCTCTCTACATAATTGAGACATAC
CGGTAATTGCACCTCTTCAACCAAGGACTTGTATTACGTTTCAATGCTAA
CTCGTTCAAGCCGTTCGTGTCGCTCGGGAGCGCCAAGACCCACCCATCTC
TTGTGAGGGACATGCTGTGTTGCCCAACCGCTAGGGCATCATAAAGATGC
ACACCCCTAATTTTTCAGCTCCATATACTGAAATGCCCAACCGCCATGGC
TTAAATCGCGATTTACACAATTGCGTTCGGGGATTTGGAGAGCAACAGAG
TCTGGAAGAGTTAAAGACAAATATGAATGCATGTAAACCTTCTGAGCATC
CCCCAATCAGGGGGGAAATTGTTAAAACGTTTAGTTGGGAATATGGACTG
CAAAGATAAAGGAAAATCTCCATGGCATTTAATCGAATTCCTCGGTGGTA
ATAATATGGAATTAACAATATAATATCGGGGAGAAACTCACCGTTATGTT
GTACTTCGAAGAACAATTTACAATTACCAAAACACAGGCAAAAGACACGA
TACACCTGGATATAACTCAATTTTTCATATTGGGTCTGGGATCGGGTGGG
TGCCATCACTAACTTTCATATTATTATATCATTTTCTTATATAAGCCATC
AAACAAATTATAGCCAGTAGATTAACAAGGAAGAAGACAAGGTTTGCTTT
CTGATAAATCATCAGGTGAATCCAGCTGCTAGAGACTAAGGAAGAGAAGT
GATACTATCTATCCTATCCAGTGCAGTTTTTGGTGCAATTAGTAGTTGGT
GATACGATACCAGGTACAATATATAGGTATAATACACGACCACCACAGTA
TAGTTTAGTATTATCTCTGTGAAAGCGAAAGAAATAAGACACATGATGAC
AGGAGTAGTTAACTAACTGTCAGCTGGAAGGGGCACAACGAGCCTACGAT
TATATTAATGTATGTTTAAGCAGGCAGAGATTAGAGTATGGCTCGAGGAA
GGGTTGAAGAAGAGGAGACAAAGAGGGCCACCACTCAAGTCTTGAACATA
GTGTAGTGTAATATAATCCAGAAAGTACCAGAAACCGTTATTCACCTGAA
ATTAGAGTAGACAAAGAGCAGTGGAGGGCCACAAGAAGGAACAAGGGGAG
GGGAGGGGAGGCAGGGAACACACCTATAATACCTGTCAGAGAGAACTACA
CACCCCTAGTGGTGGTGAATACATAGGGTTTGGATTAAACGATGTTTCGT
GGTCCAGAAGCTCAGGGTATATGCGAGATGGTCTGGATGGGGGCGGGCGA
TTCGTCCCTGCTGATATAGTTGGTGTACACACATTATCTTTATTAGCGCC
GTCCCGGGTAGCACATGACAATGTCGAGAACGTAACCACACACAGAAACA
CAGACACAGACACGTATAACCAACTCAACAGAGTTGCAGTACAAAAGTAT
TCTAGACAGGGGAGTAAGAAAGCCGTTCCCCTGTGAGTAACACATAAATA
CTGATAACAACTCCTTCGCACACGAAACGGTTGTAGATTCGTCTTTCCAC
ATCCCTCCCGATGCGTAAACCAGTTTCACACTAATTTCAAACGTTTTATC
CCCCCAGCTTTTTAGACGCAGCCCTCAATATCTGCAAGTAGTTCACAGAC
AAGACTTGCTTATTGGGAACTTTTAACACTCAAAACCGCGCGTAAAATAT
AACTCAGGATCCAGTACACTACACCGGAGGCATTTGTGAAAGTCATTTCA
ACTTTTCCAACCTGTGTACCAATTGTACGTATACCTACGTATAGAACTTT
CTTTTTTATTTTAGAACACGACAATCTTTCATGGCACGACATTTCATTTA
CTTTTGGCGCAGCTACATTATCCCCCGACTACATCATACGGGTCGTAAAG
TATGCAACTACTCAACGTATACGGATGGTTTTTCAGAGACGAGATTTGAA
TGGGTGACCGTAGGTTCACATTCCCATCTGATCGCTCGTCGATAGGGTTC
GTAAAAACACTTTCCAACCTTCTTATCTATCAACCGTTGTATAACTCAGA
ACTTTGACACCCAAAGTATACTCAAATGTACGTGACGGAAAATACGCAAT
AAAGTGCTCAAGGTGTAACGGTAGATCAAAGTCACAGTTAGGGCGAGCAG
GGTCTTGCTCGTTCACATCTGATGACAGGGTAAGACTTAAGTCGAATCTA
GCAACGGTCGTAGTTACCTCTTCATACCAATCAAATTACTCATACGTCAA
CAGAAAATGGGCTCTACTATTCTGACTTTGTTTACTCTTGTCGAGTTCAA
GGGAAAATACAAAACTTCGGGAATTCTCAAAATATTATGTTGAGTTGTGT
ATATCGTACCGTATCTTAAGCGTATACTCCCTTCAAGAGAATACAAAGAA
TATCGTTCAGCCAATTCGAGACAAAATAGTACATCGAGTGAGAATGTGAT
TGCTCTGGTAGCTCGGCGCGCTATTAGTGCGGACATGCAAGACTCGCTCG
CTCCGTCAATTAGTCTCTCTACTGTACCATACCCGATAAAAAAATCAATG
ACCTACTTTCAACTCTATACTTGTATGTGTACGAAGCATATTACCGCTGT
TTCAGCACCGTACTGTATATCAAAGAATGAGAAATTACTAGTGCATCACA
ATGCTCAAATGATTTTATCGGGTTGAGTACACCAGGCTTTAATTCCAGTA
TAAATAGGCTACGTAAAGAAAACACGAGCGACTATGCTGACCACAGGTAG
TTGCTAGAAAACCGAGCCAGATTTATCCTTCCCCCAAGCGTTTCGATACA
ACCGAACCGGAAATAGTAGTGTTCATCTTTGCGGGGTTGATCTTGCGCTC
CGGTTTTGTATATCAGCGACTTGATCCGCGTCTCCTCTCACGTTTTTCAG
CTCGCTGAACAAAATAATCACCTGATGGAACAGTAAAACAAAATACAACA
GGCACGCACAGACAAAAAACACGAAGCATAAGCAGCGGGCCTCCCATGGC
CAGCGTTCCCCCCAGAGAAAGAAAAGGCTATCCGTACAGCCGCTTTCCAG
GGCAGCGAGTCCTCTCCTATCTCTCCGGGGTTAAATTGCTTGTTCTCTTC
GCTGGCTGTCTTCTTGTCCTCGGGTTTGCGGCTTGCCTTCTGGAAGATGG
TGCTTGATAAATTTGCCGGTGTCTTAGCTGTACCGACTTGCGTACCAACG
CGTCCCGTGGGCGAAGAGGTGTCTCCCCCCTGATTCGAATCCCATGCCAA
CGAGCAAACAACGTTGGCGATGGCTCGTCCTGTCTCCCATATCGCCCCGG
GACACTGCTGTCCGGGTGTTTCGAGACCCATACCAGCCGATGGTGGTTCG
AGCTCCGGCAGCTCAAGGTTCATTCTACCCTCGTCGTGTTTTCCTCCAAA
CTAACACACACATCTGACGGTATCTTGGGATTGAGCGAGCGGGGGATACT
CGCCGGTACTTTCAACATGCCCACTTCATACCAATAGTGGGTGTGGAAAA
GAGAGACGTATATTAATTGGTCCATGGTGACCCGCTAGGGCAGCACTCGT
TCGGAACTACCTTGAGGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCAG
TGAACGCCATCGGTACGCAATTGCGTGACCCGATGAACTCGGGACTGACC
CGATGGTGGATGTCGGTTTAATATAAATATATGGACGCCGCCGCGGAACT
CGGGATGAATCCCGTAAGTAAGCACCAGATTCAGTTTGAGAATGGGGATG
AGCAGGCTGACGCGGGACGGGACGGCTGAACCTGTCTCGCGAGACTAAAT
TTTCAGGCACGCACGGAGACAGGGGAATATTTATTTTCCCTGTTCAGCTG
ACCACGAGCAGGATTGGCAACCTTACCAGGTTGATCCATAATGCTATATG
TGATGACCATACATACATACATACATACAGTGCTGGACTGTACTAACTGG
CGTGACAGTCACCTGTGCCGCTTCGCGACTTCGCCTCTCCACGTACCGCT
TGATCGCGGCGAGTTCTTCATCTGGGAGGTCCTCCTCAAGTCCACCAAGA
AGTTCCTTTGCCTTCTGCCAAGGTCTAGCCCTATCCGAAATCGCATCCTT
TAGCTCTTACAAATCAGACCACAAGCTCGCAGTGAGTTCTTGAGGCGATA
GGGGACGGGCACCGTACATCCAACGATCATCGCGATCGTAACCATAAGCC
TTCCTCCAGGTAACCAGCTTCTCAACTGCTTGGAGGTTCTTCATTTCCCT
TAGGCGGTAAGCTGCAACGGTCTCAGTTATCTTTGCCAACTACTGCCTAT
GCTTTCGGGCTTGTTCTGACTTGCCAAGTACAGCGGATATTTCATCCTCA
GAGTACTCAATTTTTACCACTCCAGTGCCATCGTTTGGGTCATTGTTTTA
CTCACGTTCTCAGGAGGAGCCTCTCACCCTCCTTGGTGTCGCTTCCACTC
CTGTACTCGGCATCCTCAGCGCCGGCTCTGATGGTCTCGTTAGTCGGGTC
GCTCCTGCGCCCGGTCCCGTCACTCCAACTGTCCTCTCAGCGGTGATGCT
TCGCCTTCTGCGGTACTCCCAATCCTTAGCCCTACCTCTCCATCGTATAT
AACAAGACACTATCTCGCGGGGTCTCTGGTTCGAGAAGGAGTCCTTTAAC
GCTTAGCGTGTTTCGTGGTCCCGAAGCTCAGGGTATACGCGAGATGGTCT
GGATGGGGGCGGGCGATTTATCCCTTCTGATATAGTTGGATTACACACAT
TGTCTTTATTAGCGTCGTCTTGAATAGCACATGACCATGCCACGGAGAAC
GTAACCACGCACAGGAACACAGACACGTATAACCAACTCAACAGAGTTAC
AGTACAAAAGCAATCTAGACAGGGGAGTAAGAAAGCCGTTTCCCTGTGAG
TAACACATAGATACTAATGTCAACTCCTTCACACATGAAACGGTTGTAGA
ATCGTATTTCTACAAACGAGACAGAGAGGGCCACCATGGTAGATATCTTC
AACATGGTCGAGAAAATACTAAACACTGGTATTCACCTGAAAGACTTGAA
GTAGACCAAGAGCCGAAAAGCAGTGAAGAGTCACAAGGAAGGAGGAATGA
AGGGCAGGTGGGCAGAGAACGCACTTATACGCGTCAAAGTACTTGTAATC
ATCGATATCAAACTTTTGCAGTCTGGAACTGGAACCCCCCAACGCAACCT
TTTGTACGGTACACTTACACGAAGTTGGTTTATATGCTCGCGTGTCACAC
TCCAGCAGTGGTACAACCCACCATCTATTAATGTCCTATTTTGGCTCTCT
GACCCCCGCGCTGGACCGAGGGGTACTGTATACTGTAGATTCTGCCACTC
CATATCGACGCTGTCGCTTACAGTACCAATATTGCGGCGCGTCTTTTCGT
AGCATCTCAACATGCTACGTGGCTCCTGCGAAGAGCGAAGCGCTGCTAGG
ATTGATGTCGCGATTTTAGCAACCATTACGATAGCTTTAGTAATATTACA
ACACACCGAGATTCGGGACCCGGCCAGCGCCCGAAGAATGTCTCTTCATC
AGTTGAGGCGTTGTACGTGAGTCCGGTCTGCGAAGGAACAGCTCGCCACT
GCTGCAGCGTGCAACCCACTGAAACGCAGCTGGTATGTAGACGGTGCAAG
TGTCGGCGCGAAGATCCTGGCGGAGCTAATTCGGTATTTCCTACTTGCTG
AAATCCCTCTACAATGTCCAAGCAATCGGGTTCAAGTTGTCAAGGTTTTT
GTGCCCAACCTTTTTAAAAATACGTTGGTGAGCGTTCGAATTTACTCCTG
CTTTAACAAAAAAGGCTACATGCCCCACCTACAGACCTGAAGAGCCTTGA
AATCCGGGCAATACTTGTGAAAGCACCAAAAGCCACTTGATGCGATTTTG
AACAGTTTACTAATCTGCTTCCTACGACGTGCGACAAGCATATTTTTATG
TCATATCTCCTTTCGTTAACCAAGACGCAGTGAAATACAATATTGTACAC
GTGAAGCGATGGAATCTCGTACAGAGAAAGCTACAAGGTATGGTTTTCGT
GCAGCTGCGATCTTGATATATAGCTTCCTCGCTCCCTTGGGTTCTCTTGG
CGATCAATCTTCTGCCCGTTCAGCAAATCGCTAGCCCTAGCTGGACTAGC
TCGGCGGAGACAGCGATTCCATCGGCAGATGGTGCGTCACCTTCTCAGAG
ATCACTTGTTCTCCTTGGAAACGGAGCAGAAGGGGCGGGGTCACCAACAC
GCGCCCCGAGATTATACGTGGGCGGTAACGGGTTACACCTTGATGTCGGC
CAGGTTGTTGAGCTATCACCTGACCAGACGCGATATCTAATGAGCGTTAT
GCGCCTGCGGGAAGGCAGCGCAGTGCGTATTTTTGACGGATTTAACGGAG
AATACAGCGCCGCCGTGTGCGACGTTGTCGGCAACAGCAGCAAGGTTCGG
AGAGGGAAGACATCGCGGGGCACCCAGCAGGTACATTTACGCGTGGAGCG
CCTCACTCGACGGCAGCCGTCGACTAGCAACGCAGACCAGCAACCGGAGA
TGCCCGAAATAGAGTTGATATTTGCGCCAATCCGGAAGCATAGGCTTAAG
ATTCTGGTTGAAAAGGCTGTCGAGGTTGGGGCTTCGCGGCTTACACCCGT
GCTCACAACCCGTACTCAGGCCGGCGCCGCCGACCAAAGCGCGCTCGTTA
AGCTCGGACTCACCACGGCTATCGAGGCTGCCGAACAATCGGAGCGGATG
ACAGTGCCCCACGTCGGAGTGATGGCTGAACCGCTCGCTTCTATCCTCAA
GGAGCGTGAAGTTCGGCAAAGTAACGCTTGTCAAAGCGATGCTGCCCCAA
GTGCTGCTGGCGGACTCATGGGTGATAACATAGGCAGCAGCACTGACGAC
TATCGCCGCAAGGCTGGCGGTCAGGGAAACATACAGTCTCCCCATGTCAT
TTTCGCTTGCAAGGAACGGGATCTTGATGCTCCGCCTCTTCTGGACGCGC
TCGCACAGTGGGCTCGTCTGATGCGAGAGAACAGGTGTCCACGTCCACCC
CTCTACCCTGCATTTTTAGTAGGCCCCGAAGGTGGTTTCGACCGAGAGGA
GCTAGATTTACTATCCGCTTCCCCCGTCGTACACTTTGTCTCGCTCGGGT
CTACCGTCTTGCGAGCCGAGACGGCTGCTTTATATGCCTTGAGTTGCTGG
AGCGCATTTTGGGCGTCCAGCCGAGCGCTAGAGCGGGCTTCGAGAGCGCT
TTCGGACGATATAGGCGAAAGCCTTGAAAACCGTGAGAAATGGTAACGAA
GATAGGGTAGCTATCGCTATACGCTCGCTAAAGGATAGTTTGGTAACTAT
CGTCAGCTTAACAAAGGTGTTGGTGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1197:109660..121385+

>mRNA_F-serratus_M_contig1197.1502.1 ID=mRNA_F-serratus_M_contig1197.1502.1|Name=mRNA_F-serratus_M_contig1197.1502.1|organism=Fucus serratus male|type=CDS|length=2634bp|location=Sequence derived from alignment at F-serratus_M_contig1197:109660..121385+ (Fucus serratus male)
ATGGCGGGCTATAGATGGTGCTTACTGCTCAGCTTATGGACGTTTTCCAT
GCGAGAGTGTAACGTTTTCGGTCTCGTGGCGCCAAGCACGTGGCGAGCTC
GAGCTCGACCTCATCTCCTCTCTACGCTACATAGACACGACCACATGGCG
GGCTATAGATGGTGCTTACTGCTCAGCTTATGGACGTTTTCCATGCGAGA
GTGTAACGTTTTCGGTCTCGTGGCGCCAAGCACGTGGCGAGCTCGAGCTC
GACCTCATCTCCTCTCTACGCTACATAGACACGACCACCAAATCGCTAGC
CCTAGCTGGACTAGCTCGGCGGAGACAGCGATTCCATCGGCAGATGGTGC
GTCACCTTCTCAGAGATCACTTGTTCTCCTTGGAAACGGAGCAGAAGGGG
CGGGGTCACCAACACGCGCCCCGAGATTATACGTGGGCGGTAACGGGTTA
CACCTTGATGTCGGCCAGGTTGTTGAGCTATCACCTGACCAGACGCGATA
TCTAATGAGCGTTATGCGCCTGCGGGAAGGCAGCGCAGTGCGTATTTTTG
ACGGATTTAACGGAGAATACAGCGCCGCCGTGTGCGACGTTGTCGGCAAC
AGCAGCAAGGTTCGGAGAGGGAAGACATCGCGGGGCACCCAGCAGGTACA
TTTACGCGTGGAGCGCCTCACTCGACGGCAGCCGTCGACTAGCAACGCAG
ACCAGCAACCGGAGATGCCCGAAATAGAGTTGATATTTGCGCCAATCCGG
AAGCATAGGCTTAAGATTCTGGTTGAAAAGGCTGTCGAGGTTGGGGCTTC
GCGGCTTACACCCGTGCTCACAACCCGTACTCAGGCCGGCGCCGCCGACC
AAAGCGCGCTCGTTAAGCTCGGACTCACCACGGCTATCGAGGCTGCCGAA
CAATCGGAGCGGATGACAGTGCCCCACGTCGGAGTGATGGCTGAACCGCT
CGCTTCTATCCTCAAGGAGCGTGAAGTTCGGCAAAGTAACGCTTGTCAAA
GCGATGCTGCCCCAAGTGCTGCTGGCGGACTCATGGGTGATAACATAGGC
AGCAGCACTGACGACTATCGCCGCAAGGCTGGCGGTCAGGGAAACATACA
GTCTCCCCATGTCATTTTCGCTTGCAAGGAACGGGATCTTGATGCTCCGC
CTCTTCTGGACGCGCTCGCACAGTGGGCTCGTCTGATGCGAGAGAACAGG
TGTCCACGTCCACCCCTCTACCCTGCATTTTTAGTAGGCCCCGAAGGTGG
TTTCGACCGAGAGGAGCTAGATTTACTATCCGCTTCCCCCGTCGTACACT
TTGTCTCGCTCGGGTCTACCGTCTTGCGAGCCGAGACGGCTGCTTTATAT
GCCTTGAGTTGCTGGAGCGCATTTTGGGCGTCCAGCCGAGCGCTAGAGCG
GGCTTCGAGAGCGCTTTCGGACGATATAGGCGAAAGCCTTGAAAACCGTG
AGAAATGGTAACAAATCGCTAGCCCTAGCTGGACTAGCTCGGCGGAGACA
GCGATTCCATCGGCAGATGGTGCGTCACCTTCTCAGAGATCACTTGTTCT
CCTTGGAAACGGAGCAGAAGGGGCGGGGTCACCAACACGCGCCCCGAGAT
TATACGTGGGCGGTAACGGGTTACACCTTGATGTCGGCCAGGTTGTTGAG
CTATCACCTGACCAGACGCGATATCTAATGAGCGTTATGCGCCTGCGGGA
AGGCAGCGCAGTGCGTATTTTTGACGGATTTAACGGAGAATACAGCGCCG
CCGTGTGCGACGTTGTCGGCAACAGCAGCAAGGTTCGGAGAGGGAAGACA
TCGCGGGGCACCCAGCAGGTACATTTACGCGTGGAGCGCCTCACTCGACG
GCAGCCGTCGACTAGCAACGCAGACCAGCAACCGGAGATGCCCGAAATAG
AGTTGATATTTGCGCCAATCCGGAAGCATAGGCTTAAGATTCTGGTTGAA
AAGGCTGTCGAGGTTGGGGCTTCGCGGCTTACACCCGTGCTCACAACCCG
TACTCAGGCCGGCGCCGCCGACCAAAGCGCGCTCGTTAAGCTCGGACTCA
CCACGGCTATCGAGGCTGCCGAACAATCGGAGCGGATGACAGTGCCCCAC
GTCGGAGTGATGGCTGAACCGCTCGCTTCTATCCTCAAGGAGCGTGAAGT
TCGGCAAAGTAACGCTTGTCAAAGCGATGCTGCCCCAAGTGCTGCTGGCG
GACTCATGGGTGATAACATAGGCAGCAGCACTGACGACTATCGCCGCAAG
GCTGGCGGTCAGGGAAACATACAGTCTCCCCATGTCATTTTCGCTTGCAA
GGAACGGGATCTTGATGCTCCGCCTCTTCTGGACGCGCTCGCACAGTGGG
CTCGTCTGATGCGAGAGAACAGGTGTCCACGTCCACCCCTCTACCCTGCA
TTTTTAGTAGGCCCCGAAGGTGGTTTCGACCGAGAGGAGCTAGATTTACT
ATCCGCTTCCCCCGTCGTACACTTTGTCTCGCTCGGGTCTACCGTCTTGC
GAGCCGAGACGGCTGCTTTATATGCCTTGAGTTGCTGGAGCGCATTTTGG
GCGTCCAGCCGAGCGCTAGAGCGGGCTTCGAGAGCGCTTTCGGACGATAT
AGGCGAAAGCCTTGAAAACCGTGAGAAATGGTAA
back to top