mRNA_F-serratus_M_contig1195.1495.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1195.1495.1
Unique NamemRNA_F-serratus_M_contig1195.1495.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1195.1495.1 vs. uniprot
Match: A0A6H5KV84_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV84_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 8.470e-74
Identity = 130/173 (75.14%), Postives = 151/173 (87.28%), Query Frame = 2 
Query:   80 SCGTGRHVERDKA---RKSASDLAIAAGHLPIAGIISADPKKINIMDMAAEGRVVMLNGLVKQGVSLSFVDASSPYYTPLIAASGNGRDEAVRIILQCPGVQVNRRNPKGETALMHAAASHSLRIVRMLTQAGANPLARDRRNRSAEHWAYKRGHLHMILVKVVVWLTPPQKS 589
            S G  RH +RDKA   RK+ASDLAIAAGHL IAGIISADPKK+++M++A+EGR+V+LNGLVKQ VSL++VD S+PY TPLIAAS NGRDE VRIILQCPGVQVNR N KGETALMH AAS S++IVRML + GANP ARDRRNR+AEHWAYK+GH+HMILVKVV+WL+PP K 
Sbjct: 1938 SHGAARH-KRDKAIVGRKTASDLAIAAGHLHIAGIISADPKKMDLMEIASEGRLVLLNGLVKQDVSLNYVDPSNPYLTPLIAASANGRDECVRIILQCPGVQVNRANSKGETALMHGAASGSVKIVRMLMKHGANPSARDRRNRTAEHWAYKQGHMHMILVKVVMWLSPPIKQ 2109
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BLAST of mRNA_F-serratus_M_contig1195.1495.1 vs. uniprot
Match: A0A835YQM7_9STRA (VPS9 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQM7_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.810e-32
Identity = 77/170 (45.29%), Postives = 110/170 (64.71%), Query Frame = 2 
Query:  104 ERDKARKSASDLAIAAGHLPIAGIISADPKKINIMDMAAEGRVVMLNGLVKQG--------VSLSFVDASSPYYTPLIAASGNGRDEAVRIILQCPGVQVNRRNPKGETALMHAAASHSLRIVRMLTQAGANPLARDRRNRSAEHWAYKRGHLHMILVKVVVWLTPPQKS 589
            +RD  R++A+DLAI  G L IAGII+ADP+++ ++++AAEG++V+  GL+KQG        V L   +   PY TPLIAA  NG +  V ++L+  GV VN+RN +GETALM AA + +L I R L QAGA     D +  SAEH AYK  H++M+L K +  +  P ++
Sbjct: 3055 KRDARRRTATDLAIQVGQLQIAGIINADPERVPLVEVAAEGKLVLALGLLKQGNMEAGGGDVQLCS-NRECPYGTPLIAACANGHERMVSLLLKQDGVDVNQRNRRGETALMRAAQAGALGICRKLIQAGAQKDLLDHKGLSAEHHAYKCSHVNMVLYKGLSGVAHPPRA 3223
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BLAST of mRNA_F-serratus_M_contig1195.1495.1 vs. uniprot
Match: A0A6V1W0T1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1W0T1_HETAK)

HSP 1 Score: 94.4 bits (233), Expect = 1.980e-21
Identity = 51/118 (43.22%), Postives = 73/118 (61.86%), Query Frame = 2 
Query:  215 AAEGRVVMLNGLVKQGVSLSFVDASSP--YYTPLIAASGNGRDEAVRIILQCPGVQVNRRNPKGETALMHAAASHSLRIVRMLTQAGANPLARDRRNRSAEHWAYKRGHLHMILVKVV 562
            AA GR+ ++  LV QG     +  + P    T LIAA+  GR   VR +L  PG+QVN+ N  GETALMHAAA   L + ++L Q GA+P   D +  +AEHWA K+G+++M+  K++
Sbjct:    7 AAAGRLALVRALVAQGADPDALHPAEPRGLQTALIAAARRGRRAVVRYLLGLPGLQVNKVNAAGETALMHAAAYGGLEMAKLLMQNGADPRIIDLKGSTAEHWAVKKGYINMLQYKLI 124
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BLAST of mRNA_F-serratus_M_contig1195.1495.1 vs. uniprot
Match: D7FJN4_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN4_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.160e-10
Identity = 54/126 (42.86%), Postives = 66/126 (52.38%), Query Frame = 1 
Query:    1 VDARDALGRTALMQAARFGSEGCVLRLLRHGAARRKR-QG*KERFRSGDCGGTSSHRR-------DHQRR-------------PQEDQHYGHGR*GTRGDAKRSGEARREPKLR*RLQPVLHPSHR 315
            VD RDALGRT LM AARFGSEGCVLRL+ HGAAR KR +    R  + D    + H         D ++              P           G  G A+R+ EARREP+LR  +QP+ HP+HR
Sbjct: 2107 VDVRDALGRTPLMHAARFGSEGCVLRLISHGAARHKRDKAIVGRKTASDLAIAAGHLHIAGIVSADPKKMDLMEIASQFFTTLPST---------GAAGTAQRAREARREPQLRGPVQPIPHPAHR 2223
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1195.1495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KV84_9PHAE8.470e-7475.14VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YQM7_9STRA2.810e-3245.29VPS9 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6V1W0T1_HETAK1.980e-2143.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FJN4_ECTSI2.160e-1042.86VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1195contigF-serratus_M_contig1195:283894..287168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-09_000460.2
Exons5
Model size595
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1195.1495.1prot_F-serratus_M_contig1195.1495.1Fucus serratus malepolypeptideF-serratus_M_contig1195 285372..287168 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929092.9263823-UTR-F-serratus_M_contig1195:283893..2839351622929092.9263823-UTR-F-serratus_M_contig1195:283893..283935Fucus serratus maleUTRF-serratus_M_contig1195 283894..283935 +
1690962701.6658046-UTR-F-serratus_M_contig1195:283893..2839351690962701.6658046-UTR-F-serratus_M_contig1195:283893..283935Fucus serratus maleUTRF-serratus_M_contig1195 283894..283935 +
1622929092.9402654-UTR-F-serratus_M_contig1195:285208..2853711622929092.9402654-UTR-F-serratus_M_contig1195:285208..285371Fucus serratus maleUTRF-serratus_M_contig1195 285209..285371 +
1690962701.6765127-UTR-F-serratus_M_contig1195:285208..2853711690962701.6765127-UTR-F-serratus_M_contig1195:285208..285371Fucus serratus maleUTRF-serratus_M_contig1195 285209..285371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929092.950272-CDS-F-serratus_M_contig1195:285371..2853891622929092.950272-CDS-F-serratus_M_contig1195:285371..285389Fucus serratus maleCDSF-serratus_M_contig1195 285372..285389 +
1690962701.6881185-CDS-F-serratus_M_contig1195:285371..2853891690962701.6881185-CDS-F-serratus_M_contig1195:285371..285389Fucus serratus maleCDSF-serratus_M_contig1195 285372..285389 +
1622929092.961123-CDS-F-serratus_M_contig1195:285923..2860761622929092.961123-CDS-F-serratus_M_contig1195:285923..286076Fucus serratus maleCDSF-serratus_M_contig1195 285924..286076 +
1690962701.703904-CDS-F-serratus_M_contig1195:285923..2860761690962701.703904-CDS-F-serratus_M_contig1195:285923..286076Fucus serratus maleCDSF-serratus_M_contig1195 285924..286076 +
1622929092.9702058-CDS-F-serratus_M_contig1195:286582..2866691622929092.9702058-CDS-F-serratus_M_contig1195:286582..286669Fucus serratus maleCDSF-serratus_M_contig1195 286583..286669 +
1690962701.71571-CDS-F-serratus_M_contig1195:286582..2866691690962701.71571-CDS-F-serratus_M_contig1195:286582..286669Fucus serratus maleCDSF-serratus_M_contig1195 286583..286669 +
1622929092.980927-CDS-F-serratus_M_contig1195:287036..2871681622929092.980927-CDS-F-serratus_M_contig1195:287036..287168Fucus serratus maleCDSF-serratus_M_contig1195 287037..287168 +
1690962701.7246552-CDS-F-serratus_M_contig1195:287036..2871681690962701.7246552-CDS-F-serratus_M_contig1195:287036..287168Fucus serratus maleCDSF-serratus_M_contig1195 287037..287168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1195.1495.1

>prot_F-serratus_M_contig1195.1495.1 ID=prot_F-serratus_M_contig1195.1495.1|Name=mRNA_F-serratus_M_contig1195.1495.1|organism=Fucus serratus male|type=polypeptide|length=130bp
MDMAAEGRVVMLNGLVKQGVSLSFVDASSPYYTPLIAASGNGRDEAVRII
LQCPGVQVNRRNPKGETALMHAAASHSLRIVRMLTQAGANPLARDRRNRS
AEHWAYKRGHLHMILVKVVVWLTPPQKSA*
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mRNA from alignment at F-serratus_M_contig1195:283894..287168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1195.1495.1 ID=mRNA_F-serratus_M_contig1195.1495.1|Name=mRNA_F-serratus_M_contig1195.1495.1|organism=Fucus serratus male|type=mRNA|length=3275bp|location=Sequence derived from alignment at F-serratus_M_contig1195:283894..287168+ (Fucus serratus male)
GTGGACGCAAGGGATGCCCTGGGCAGGACCGCTCTCATGCAGGTACGCTA
TTCTGTACAGTTTACAGGTACCGTACTTGGTAGTTTTGGGGTTCAATGTT
TGTCAATGTTTATGTACGGAAAGAAAAAAAGTGAGGACCAACAGTGCTGA
TGCGATCCGGCGTTCGTAAGGTTGCTGGTTGCTCTTGCATGTGAAAAGGG
CTACTGCTGCTGCTGCTGCTGCGCTACGGCCGCTCATGCTCGCGGTATTT
CGTGTATTCGCTATGCGAAGAAGTCATGAATGCACACATTCCATATCCCC
CACTTGGTACCCGGTACGCTTTTTTCTTTAGTACAAAATCTATACGAAAC
TTGCACGAGATTAGGGTCAGTAGCGTTTTTGAGTGGGGTTATGAACGGAA
TAGGTTTGTGGCTCTGGCCTTTGGAGGCACTTCCCCTACCGCCTTTGCCT
TCTACGTTTGCAGTGAGAAGTGGAAGGTGGACAGACCCGAAGAAAGCATT
TTTATTACGATTAATAGGCTCTAGCTGCAACGTATTAATATTCAGCATAT
TAATCTTCAACATATTAGCATTCATCATGTATTGCGGTAAAAGCATCGTA
CCTCGTACAGGGGACCTTAAAACACAACCACGATCCGTCGGTTAAACTGG
TAATAAGCTGCACGACTAGTTGTACCGCAAGACCGTGGTAGCTTTAAATC
TGAAGACGCGAGGAAACACAATTAACGTGTAGCATGAGTCTATTAACTAT
TAATAGCTCTCAACACGAGAGTGGACAAAGTTGAAGGGTTGGGGGCGATC
TGGCGGGTGCTGAAGTTTTGAGACAGCGTGGATGGGAGCCGGAAAGAGAT
GGGGGTAGGCTACCCTACGTATCGGAGTCTTGGCACACCCCCAAGACAGA
CTTTTCCAGACTCGATTGCTCCACAACCAAGAGGGTTATACTGGTTATAG
TATAGGTGACAATGCCGAAAAGGCGGTTTTCGAAAGATTGATGATCTCGT
CGAGAGCTTTCTTTAGACGTATCGGTCGGTGTTCACATCCTCTTGGTTGT
GGAGCAATCGAGATTGGAAAGTCAGTCTCGGGGATGTGCCAAGACTCCCA
TACTTGGGTATATAATTTCAGGCTACTGGCGAGATGGGCGTGATCGCAGT
ACAGTAATCGTGATTAGTACATTAGCACTATTCGCATCTCCAGAAACGGC
AGGAGTCCTGCGCCAGTTTTGTTGAGCCGTTTGAGACCGCCACGGTGAAG
GTTTATCTTTTCCACTTTGCTGACGAAACGCTCCCGTGCTTCTTCTCGCT
TGCGTCGGCATAAAGGCGGCGCGTTTCGGAAGCGAAGGCTGCGTGTTGAG
GCTCCTGCGGCACGGGGCGGCACGTCGAAAGAGACAAGGCTAGAAAGAGC
GCTTCCGATCTGGCGATTGCGGCGGGACATCTTCCCATCGCAGGGATCAT
CAGCGCCGACCCCAAGAAGATCAACATTATGGACATGGCCGCTGAGGTAC
GTACAAATATTGAAACATTTCACGTGGGACAAGTATCGTGTGGAGTTATT
AAGCGCTTGGGTGGCTTTAAGGGGATGGGGCGAGAGGAGGGAAGACTCCA
ACAAAGATTGCCGAGATGTGTTCTATTTCTACATGAAGCTGTAATAGTAT
TGTTTTTAAGGGTGCGGGATGGTGGGGGGGGAGTGGCACGGCGGGGGAGG
AGTTCCTTGATCCGGTCTCTAGTAAGGTATTGTATGCGTAGTGGTGTAGC
AGATGGCTGACTTGGGGATGAATTCCATCACCATTGGTAAAATATTCCTT
CCCATGCACCTGGTATCGACCTCCGGGCAAAGCGGAAATGCCGCAATTAC
GCTACCTAGGACCGCCTAGCCGAGTCGCCATTAATGTAGCTCTATACCCT
TTACCTTGCACCAAAACATGAAGATACCCTTTAAAGTACAGCAAGGTAGA
GAAGGGACTGTATTGATGTCCCCCCAATACGCATATCGCGCCGCATCACA
TCACGCCACGTCACATCCCACCCGCATTAGGGACGCGTGGTGATGCTAAA
CGGTCTGGTGAAGCAAGGCGTGAGCCTAAGCTTCGTTGACGCCTCCAGCC
CGTACTACACCCCTCTCATCGCCGCTAGCGGCAACGGTCGCGATGAAGCA
GTGCGGATCATCCTGCAGTGCCCTGGAGTCCAGGTGAAACACAGTACCAC
TACTAGACTGTAGTATAGCGTAACCTGTACCCTGTTGGTGGCTCTCGCTA
CGTAACCTGTACCCTCTGAGATGCATCATCTGTACCTTGTTTAGGTCTTC
GAGCTTGGTGATAATCCAAGTACCATTCCTAAGGCACATTCGTTCAATGC
AACCCTTTTAATTTTTAAGAGATACCCTGCTGGGTAACCCGTTACATGTC
ATTCTCCAAGTCAAGCACACGGTTGGCGGTGTCGGATTATCATGGGCATG
AGGAAACATTTTTTTCACCCCGTTTTTACCTTTTTGATACTCTTGATACT
CTTGATACTCTTGATACTCTTGATACTCTTGATACTCTTGATACTCTCGC
GCCCCTTTGCCACACGCTGTATGTACTGTATCGATATGCCGGCGACGCAG
CCCTTGTTCTTAGGCAATTCGCGGTGTTGAGTGTTAGAGAATTCACCTAT
CCGTTTTTTCGCCGGTGTGGGTTTTTCAACGTCTGTCAGGTGAACCGCCG
GAACCCGAAGGGTGAGACGGCTCTTATGCATGCAGCGGCATCGCACTCGC
TCAGGATCGTGCGCATGCTCACGCAGGTGATGGAAATGAACGACCAGAAC
TCGCGGAGGGACTTGTTTATTTCCTGTCAAATTGCTCTAAGTACGCGCTT
CGTATTTTAATTAGTCTACCACTGTTTATAGCCTACTGGGTTTCATTTAT
TTTTGTTTCGATCTTCCATCGTTTAAATAGCAACGTCTATATATTTCCCT
AGTTTTTCAAGCCTCTATCTCTTCGACTTCAGAACTCCAGCCACACAACA
GTTTGCCTATGTCGTAGATGTTTATCTGGACCAGATAGCACACGTCGGGA
AATCCGTTGCCCGGTTGGATGTAGAGAAATGCTGTTACGGTTGAAATCAC
CATACGCCCGCTTCGTGACGCTTCCGTTCCCCGATGGCGTCAGGCCGGTG
CCAATCCTCTAGCACGAGACAGGCGCAACAGGAGCGCCGAACACTGGGCC
TACAAGAGAGGTCACCTGCACATGATCCTTGTCAAGGTGGTTGTGTGGTT
GACTCCCCCTCAAAAATCCGCCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1195:283894..287168+

>mRNA_F-serratus_M_contig1195.1495.1 ID=mRNA_F-serratus_M_contig1195.1495.1|Name=mRNA_F-serratus_M_contig1195.1495.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig1195:283894..287168+ (Fucus serratus male)
ATGGACATGGCCGCTGAGATGGACATGGCCGCTGAGGGACGCGTGGTGAT
GCTAAACGGTCTGGTGAAGCAAGGCGTGAGCCTAAGCTTCGTTGACGCCT
CCAGCCCGTACTACACCCCTCTCATCGCCGCTAGCGGCAACGGTCGCGAT
GAAGCAGTGCGGATCATCCTGCAGTGCCCTGGAGTCCAGGGACGCGTGGT
GATGCTAAACGGTCTGGTGAAGCAAGGCGTGAGCCTAAGCTTCGTTGACG
CCTCCAGCCCGTACTACACCCCTCTCATCGCCGCTAGCGGCAACGGTCGC
GATGAAGCAGTGCGGATCATCCTGCAGTGCCCTGGAGTCCAGGTGAACCG
CCGGAACCCGAAGGGTGAGACGGCTCTTATGCATGCAGCGGCATCGCACT
CGCTCAGGATCGTGCGCATGCTCACGCAGGTGAACCGCCGGAACCCGAAG
GGTGAGACGGCTCTTATGCATGCAGCGGCATCGCACTCGCTCAGGATCGT
GCGCATGCTCACGCAGGCCGGTGCCAATCCTCTAGCACGAGACAGGCGCA
ACAGGAGCGCCGAACACTGGGCCTACAAGAGAGGTCACCTGCACATGATC
CTTGTCAAGGTGGTTGTGTGGTTGACTCCCCCTCAAAAATCCGCCTGAGC
CGGTGCCAATCCTCTAGCACGAGACAGGCGCAACAGGAGCGCCGAACACT
GGGCCTACAAGAGAGGTCACCTGCACATGATCCTTGTCAAGGTGGTTGTG
TGGTTGACTCCCCCTCAAAAATCCGCCTGA
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