mRNA_F-serratus_M_contig1191.1479.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1191.1479.1
Unique NamemRNA_F-serratus_M_contig1191.1479.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1191.1479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1191contigF-serratus_M_contig1191:218194..219925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size331
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1191.1479.1prot_F-serratus_M_contig1191.1479.1Fucus serratus malepolypeptideF-serratus_M_contig1191 218357..219925 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.9969997-UTR-F-serratus_M_contig1191:218193..2183561622929087.9969997-UTR-F-serratus_M_contig1191:218193..218356Fucus serratus maleUTRF-serratus_M_contig1191 218194..218356 +
1690962699.396806-UTR-F-serratus_M_contig1191:218193..2183561690962699.396806-UTR-F-serratus_M_contig1191:218193..218356Fucus serratus maleUTRF-serratus_M_contig1191 218194..218356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929088.012437-CDS-F-serratus_M_contig1191:218356..2183891622929088.012437-CDS-F-serratus_M_contig1191:218356..218389Fucus serratus maleCDSF-serratus_M_contig1191 218357..218389 +
1690962699.4076638-CDS-F-serratus_M_contig1191:218356..2183891690962699.4076638-CDS-F-serratus_M_contig1191:218356..218389Fucus serratus maleCDSF-serratus_M_contig1191 218357..218389 +
1622929088.0277789-CDS-F-serratus_M_contig1191:219790..2199251622929088.0277789-CDS-F-serratus_M_contig1191:219790..219925Fucus serratus maleCDSF-serratus_M_contig1191 219791..219925 +
1690962699.4187872-CDS-F-serratus_M_contig1191:219790..2199251690962699.4187872-CDS-F-serratus_M_contig1191:219790..219925Fucus serratus maleCDSF-serratus_M_contig1191 219791..219925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1191.1479.1

>prot_F-serratus_M_contig1191.1479.1 ID=prot_F-serratus_M_contig1191.1479.1|Name=mRNA_F-serratus_M_contig1191.1479.1|organism=Fucus serratus male|type=polypeptide|length=56bp
MGSIYPLFIILYFILFYFFRREGGSYYRLCVDSSGSFYFSFISHNIYPFG
GEVSL*
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mRNA from alignment at F-serratus_M_contig1191:218194..219925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1191.1479.1 ID=mRNA_F-serratus_M_contig1191.1479.1|Name=mRNA_F-serratus_M_contig1191.1479.1|organism=Fucus serratus male|type=mRNA|length=1732bp|location=Sequence derived from alignment at F-serratus_M_contig1191:218194..219925+ (Fucus serratus male)
TGTAGGTATGTGTAGGGAATGGCCTGGCCGGTGCAAACCCGGCGGCGAAT
ACACCCCGGCCTAGTAGGGGTACAAGGATAGAATCATGTGTGTCTTGGTT
GGTGATCCTTGATTCTTTTCGTTTGTTTTAATTTTGCTTGGCCTCGCGTG
TCGAGTGGGAGCGATGGGCTCTATCTATCCCCTTTTTATTATTTTAAGAC
CACTTCTTATGTTGTTAGAAAATCTTATCAGAAAACGCCATTTCTGATAA
GAGACCAAAAATCCGCTTCTTACGTTATCAGAAAAGGCGTTTTCTAACAA
GATGTTTTCTGATAAAATTTTCTGATAACCTCATCCTGTTAGAAAATCGG
GATTTTCTAACAGGATGCACTTGTTAAAAATCTTATCAGAAATGGGTTTG
AATTCCCAACGGCTAGGGTTTGAATTCTCAACGGCTGCTAAGTTGCAGCG
GTGACAGTCCCGATGGCAGCATATCGACGCCGCAAGCAGAGAATAAAAAA
TACTAGTACCAATCAGTTGGCACCTGTTCTGGGGTTACTCGACGAGGAAG
ACGCAGTCGTGTCCCGAGAAAATATATGTCTGTAGCCTTTGCAGCGTGCG
TTGTGCAGCTTTACCTCCTCTGTACAGATTATTATAGACTATGCTGTTTT
AGATGTTGTTTGATGCTGTAATTGGAGGTCGCTTGCACAACAGTACTACT
GGTTGAATGGAACATTGCGGCCTTCGAGCTGCATTCGTGTGGCTGTGCAA
GCCCCAAACGATTGTAGACCACGTACTGTACCATGCCAAGGTTATAAGTA
GGTGCACAAGGTAATGCGCCTACCCGCAGCAGCAGTCCTTCGCTATGTGT
TGTGGGCGTGCCCCGGAACGAACAGACGCAAAAAATCAAATTCGCCTTCA
AAGACAGACCTCGTGTAGGGTGGAGACTCGCATGGATTACTGTTACAATT
ACTGTGTCGCAGCGGTGACGGCCACGGTGGCAGCATATTGACTCCGCAAG
CAGAGGATAAAAAATATCAATCAGTTGCCACTCGTTCCACGTGGAAGATG
CAATCATGGCTCGAGAACACATCTGTAGCCTCTGCAATGTGCACCGTACA
GTACAGCAGTAGTTACGTTCTCCGTACACAGATTATAGACTATGTTTTTA
GAGGCCGCTTGCAGTACAAAAAAAGGTCTGGGCGCGTTCTGATTTTTCAC
AGTTTGCATGGCACGTTGCGGCCTTCGAGATGCATTTGTGTGGTTGTGCA
CGTCCGAAAGGATCGAAGATCACGTACTGTACTACGCCACGGTTGTAAGT
AGGTGCACAAGCTAGGCAATGAGTCTACATGCAGCAGCCTTTCGCAACGT
GTTGTTCGTGACAAATAAAACATACGGCAGACTGTGCACACATTCGACAG
ACTTTCCAATAGTTGGAACGTGCAGACGCCTCCAAGTAACCGGCCGGTGA
AAACTACTTTTTTATTACCCTTTTTATATTTTGATAAGCTGCAAGATAAG
AACGGGTCTTTGGGAAAATCCTGTTGGAAAAACGGTTATCAGAAAACGCG
TTTTCTGATAACATTTTTCTAACAACATAAGAAGTGGCCTAATATTTTAT
TTTATTTTATTTTATTTTTTTCGGAGGGAGGGGGGTTCCTATTATCGCCT
GTGTGTTGACTCCTCTGGGTCCTTTTATTTCTCGTTCATTTCTCATAATA
TATACCCTTTTGGGGGGGAAGTTAGCCTGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1191:218194..219925+

>mRNA_F-serratus_M_contig1191.1479.1 ID=mRNA_F-serratus_M_contig1191.1479.1|Name=mRNA_F-serratus_M_contig1191.1479.1|organism=Fucus serratus male|type=CDS|length=336bp|location=Sequence derived from alignment at F-serratus_M_contig1191:218194..219925+ (Fucus serratus male)
ATGGGCTCTATCTATCCCCTTTTTATTATTTTAATGGGCTCTATCTATCC
CCTTTTTATTATTTTATATTTTATTTTATTTTATTTTTTTCGGAGGGAGG
GGGGTTCCTATTATCGCCTGTGTGTTGACTCCTCTGGGTCCTTTTATTTC
TCGTTCATTTCTCATAATATATACCCTTTTGGGGGGGAAGTTAGCCTGTG
ATATTTTATTTTATTTTATTTTTTTCGGAGGGAGGGGGGTTCCTATTATC
GCCTGTGTGTTGACTCCTCTGGGTCCTTTTATTTCTCGTTCATTTCTCAT
AATATATACCCTTTTGGGGGGGAAGTTAGCCTGTGA
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