mRNA_F-serratus_M_contig1191.1478.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1191.1478.1
Unique NamemRNA_F-serratus_M_contig1191.1478.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1191.1478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1191contigF-serratus_M_contig1191:206561..211156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size239
Cds size189
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1191.1478.1prot_F-serratus_M_contig1191.1478.1Fucus serratus malepolypeptideF-serratus_M_contig1191 206611..211156 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.907674-UTR-F-serratus_M_contig1191:206560..2066101622929087.907674-UTR-F-serratus_M_contig1191:206560..206610Fucus serratus maleUTRF-serratus_M_contig1191 206561..206610 -
1690962699.3626182-UTR-F-serratus_M_contig1191:206560..2066101690962699.3626182-UTR-F-serratus_M_contig1191:206560..206610Fucus serratus maleUTRF-serratus_M_contig1191 206561..206610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.9342794-CDS-F-serratus_M_contig1191:206610..2066931622929087.9342794-CDS-F-serratus_M_contig1191:206610..206693Fucus serratus maleCDSF-serratus_M_contig1191 206611..206693 -
1690962699.3711038-CDS-F-serratus_M_contig1191:206610..2066931690962699.3711038-CDS-F-serratus_M_contig1191:206610..206693Fucus serratus maleCDSF-serratus_M_contig1191 206611..206693 -
1622929087.947735-CDS-F-serratus_M_contig1191:211050..2111561622929087.947735-CDS-F-serratus_M_contig1191:211050..211156Fucus serratus maleCDSF-serratus_M_contig1191 211051..211156 -
1690962699.384042-CDS-F-serratus_M_contig1191:211050..2111561690962699.384042-CDS-F-serratus_M_contig1191:211050..211156Fucus serratus maleCDSF-serratus_M_contig1191 211051..211156 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1191.1478.1

>prot_F-serratus_M_contig1191.1478.1 ID=prot_F-serratus_M_contig1191.1478.1|Name=mRNA_F-serratus_M_contig1191.1478.1|organism=Fucus serratus male|type=polypeptide|length=63bp
ATITKSSQLNGSEAEENDRREEPPVTLGAHLPAPQRELTRPRRRGTTTHR
SKRFWEAQYKSF*
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mRNA from alignment at F-serratus_M_contig1191:206561..211156-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1191.1478.1 ID=mRNA_F-serratus_M_contig1191.1478.1|Name=mRNA_F-serratus_M_contig1191.1478.1|organism=Fucus serratus male|type=mRNA|length=4596bp|location=Sequence derived from alignment at F-serratus_M_contig1191:206561..211156- (Fucus serratus male)
GCAACCATCACGAAAAGCAGCCAACTGAACGGGAGCGAGGCCGAGGAAAA
CGATAGGAGGGAGGAGCCACCGGTTACGCTCGGAGCTCACTTGCCCGCCC
CACAACGTGAGTCAATCAGGAGAGTATGGCAGAAGTTGCCTAATCACATG
AAAGACATAAAATTCAAGCTTGCAAGTCAAGGTTGGAGTAACGCAATCAT
CAAACGATTGGGAAAAGTCCTGATAGAATATCAGCATCGATTTTCGAAAG
GTCAAGAGGACTTGGGGCTATACAAGACTGATCCCTTCGAAATCAAACTC
AAGGAGGATGCGAAAACACCCATCGCTTCTCGTAGTTACCGATACAACCC
AGTTGTAGCCAAAGAGGTCGATTCAATAATCGACAAATACCTGAAGGCAG
GTATAATAAGACGGTCTCAATCGCCGTATGCGGCTCCAATAGTAGTCGTC
CTGAAGAAAAATGGGAAAATTCGGATTACCTGTGACTATCGGCGTTTAAA
CGAAGCCACAGTAATACCACAAGCACCGATCCCGCGCATCGACGAGCTTT
TAGACACGTTAGGGTCGGCTAAGTGCTTCAGCTCTTTTGACATGATGTCA
GGTTTCCACCAGATCATGATAGGAGAAAACAGCGTGCCGCTCACAGCGTT
CTGTACCACTTCGGGCCTATACGAGTTTCTAGTCATGCCAATGGGGACCT
CGGGTTCACCTGGACATTTCCAACGTGTTATGCAGCACGTTACCGCAGAT
TTGGCACACTTCGTAACTCTCTATATTGACGACGTATTGGTTCGTAGTAA
GGACGAGGCGAGCATGGTTGACCACATCGAAAGGTTCTTGAAGGCTCTTA
CCAAGCATAACCTAAAGATCTCACCGAGCAAGACAGAAATTGGTGCTGAA
GAGATAAACTTCCTAGGACATACGATATCACCCCGAGGTGTTAAGCCGGA
CATAAAAAAAGTCGACGCATTACGCAAGCTACCCATGCCGACTAATATAA
CGGAGCTGAGGTCGCTCCTAGGCGGGCTGAGCTACTATCGAAAGTTCTTG
CCAAACTTGTCTAGAAGACTACAGTCGCTTACTAGACTACTGAAGAAAGA
CGTACAGTTCCATTTTACAAGAGAGATGGAGATGACGGTACGAGAAATCC
TCGGGATACTGATTTCGAAGCAGCCCGCGATGGCACGCGAAAATTTCGCC
TATACTGCGACGCGAGCGCCGCAGGCTTCGGGGCTACGTTGGAACAACCC
CGGAAGGATAACTCAATAAGGCCAATAGTGTATCTGAGCCGTACCGCACT
GCCTAACGAATTAGGTTGGGCCCCAATCGAAAAAGAAGCAGGATGTATTG
TCTGGGCCATCAAGCGACTGCGACAGTACCTGTTCTTGACCCCATTCGAC
GTATATACGGATCACTCGCCACTCACTAGCCTATTGCGCGTTGGGGACAG
CAACGCTCGAGTACAACGTTGGGTAGAGTTCCTAACGGCGTACAATTACA
AAATAATTTACAGGAAGGGTGCCGCCCATGGTAATGCAGACATGCTGTCG
AGACTCTGTCAGCCAGCAACCGACGCAGATAAAAAGGGGGCGTGTACCAT
CACCAACTCAGAGGATCATGCGGTGTTCTTCGTAGGTGCGAACGGGTTGT
GGCCGAGGAGCCCAGCAACGTCCGACGTACGGATCGACACCAGTTTCGCA
AGAAGGAGGTTAGGCGTGGGTGGGCTCCTCACTGCCCCAGATTATTCGTA
CGATAAGAGCAAAAATCACTACGTCTATCATGGGCACACAGACCTCGAGG
AACATACACTACATGACCCTACTCCAACGTGGCATTCACTTTGCAAAAAG
TGCTACAACAGAAGGAGTTATCAATATGTACAGTACAACGGTACAGTAAC
TCCAGAACAGCAACAGTAGCGGCGGTAATTGCCAAGCAATCCAAACCAAA
GCAAGGTCCGCTCCCCGTACGACGATCGCCGCGCAAGCGACGACCGTCCA
GAGTCATGATCGAAGTGATGGAATCGTCCGCGACAAAGGAGCCATTAGAG
TCGATTGACGAGGCGAAAGTTACGCCACAAGAAAACAGTACGCACGAAAT
AGACGTCGGTACAGAACAAGTAATATCATCGAAAAATAGCAGAGAAGATG
ATACTCCGGAAATACGCGTGGACCAACAACTAGCGTCACCGGAGGGGGAA
GAGCCTCCCACGGAGGACATCGACGTTGGGGAAGATAGAATACCCGAACC
GGCGTCTACCAGAACTCGACAAGCTAACTCAGATTTGACTAGGGACGCTC
GACTTGATGTCGATCTGGGGTCGATGACTGCCCAAAGGTGGAGACAGGAA
CAATTACAGGAACCAGTCTGTAAAAGTGTAATCACTCTTTTGCAGCAAGG
TCTGAGTGGTTCATCGCCACATAACATTGTGCTTCAATTTCCAGCACGGA
CGCGGCCTACAGTACAACAAGTGTTAGAACTTGCGGCTAAGTGTAGGCTG
TTCACTACAGAAAGGAACTTACCGTTACTAGTAAAGCGTAATAACCGCAG
AGCAGAGCTACCGCATGCAGGAGGCAGGGTTCCTCAAATCTATGTCCCGA
TGCTCATGCGACCCTGGGTTCTGAAGGGATGTCATTGCAGATTCAGTCTG
CCATTTTGGAGTCACTCGTACTCTACAAATGGTACAGCGCTTTTACTGGT
GGATCGGGTTGGATCAGAGCGTGAGGTGGTGGATCAGGAGGTGCCTTTTC
TGCCAAGCGCGAAAAACATCACGGCAGACGATCCGATGGCCAACCACGCT
GATGCCCCTTCCTAGTGGGCCAGGCCAAATCATCAGCGTCGATTACTTTG
GCCCTCTACCGATTACCAAACAGGGTAACAAACATATACTGCTGTACACG
GATAGGTTCAGCAGACATATTGCCGCGTACGCCGTTACCCAAGATGAACG
CACAGCAGAGGGAACCGCTCGGATTTTCGTCGAGCAGTACATTCCTCTTT
GGGGATGCCCTCATACACTTTTATCCGACAACGGAACAGAGTTTGTAGCG
CGCCTATCACTTGCGATATACAAGTTGATGAGGGTACGCAAAATAGCGAC
AACAGCCTTTCACCCGAAAAGCAACGGCGGGGTAGAACGAGTCAACCACT
CGCTGGCACAGATGTTATCGCTGGTTATTAGTGAGCAACAGGATGACTGG
GATGAATGGTTGCCCTATGTGGTACAAGCATACAACAACTCAGTCAGTGC
AGCCACAGGACTAGCGCCGAATGAGATACATCTCGGGCGCATGCCACGAT
TGCCAATGACTGTAATTGACGAGTGTATTGTCAAGGGACATATGGGCGAG
AAACAGGATCAACTGCTGTACCTCGACATTGTCCGGGAAAAACAACAACG
CGCTTTTGAACTAGTACAAGAGAGTCACCTAATAACCATGTCAAAAATAC
AGCGCTCCAACACTAAGTTGCTAGCGACACTACACAAGTTGCCGAATTTC
GAAGTTGGCAACTGGGTATGGACATACAATCCACAAGCCACAATTGGCCA
GGGTGGAGGCGAAGATAGTTCGCATATTGTGACAAAACTGTCACTAAACT
GGACCGGCCCCTACAAGATTCTAGTAGTGGGACCAGGCCTAGGACCAGAG
GGTCGACCGGTCGCAGACAAGACTCTATATCTAGATCTTCCCACCGATAT
GCCGGGAAAGGATCAAAAGAAACGGGTATCTGTAGACCGCTGCAAAATGT
GCCATAATCCTAGTGATGATTTGGACATACCTAAGTACTTACCAGCAGGG
CTGAGTAAATATGTACTTCATTCTTTCGCAGAGAAATCCCCACCATTTCA
TCCCACAACGGAGGATGTGGTGAAATCTGGCATACCAGTGGATATTGAGA
AAATCACTGGACATCAACTGGTTCGGGGACGGGGCGGTAAGTTAGCCGTT
ATGTATGAGACTCATTGGGAGGGTCTTTCTTCGATCTCGTGGGAACGAGA
AATCGATTTGAGACACTTTTCCCAACACATCCTTGAATACTGGATGTCAA
CTCCAAGACAAGTAAGGGGTGTAAACTCCAAGTATCGTGCTATGCGTAGA
GCCCAGGCACACAGAGCCTACTGGCGTAATCAGAACAAGTACTACCTAGA
ACAAGGATATCATCTAGTGTCATACAGTACTTGGGAAAATAAATTCAGAG
GGCGGAGGATACCGCTTCGGGCCTTCTTTTGGTGGAAAAACCATCAAGGC
TGGTGGTTGGGACAGGTGAAGGCATGGGACAGAGACATCTATGATCAATA
TTTCGTGAGATTCCACGATGATCCAGGGCCAGCACAAGTAATGTTAGCGG
AAGAATTCTATACAACAGATGTTGATGGTGTACCAGGATCCTGGTGCTTA
CAATCGCATATACGGGAAGGTATTTTCCGCGATACCGACATGTCGCGTGA
TGCCGATTTCCAGGAGAGCTGACGAGACCAAGACGAAGAGGGACAACAAC
GCACCGGAGCAAGCGCTTCTGGGAGGCCCAGTATAAATCGTTTTGACAGG
TAGACTTCGAGCCTCGAGAGCAAGACCAAGAACGCCCTCTCCCCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1191:206561..211156-

>mRNA_F-serratus_M_contig1191.1478.1 ID=mRNA_F-serratus_M_contig1191.1478.1|Name=mRNA_F-serratus_M_contig1191.1478.1|organism=Fucus serratus male|type=CDS|length=378bp|location=Sequence derived from alignment at F-serratus_M_contig1191:206561..211156- (Fucus serratus male)
GCAACCATCACGAAAAGCAGCCAACTGAACGGGAGCGAGGCCGAGGAAAA
CGATAGGAGGGAGGAGCCACCGGTTACGCTCGGAGCTCACTTGCCCGCCC
CACAACGCAACCATCACGAAAAGCAGCCAACTGAACGGGAGCGAGGCCGA
GGAAAACGATAGGAGGGAGGAGCCACCGGTTACGCTCGGAGCTCACTTGC
CCGCCCCACAACGAGAGCTGACGAGACCAAGACGAAGAGGGACAACAACG
CACCGGAGCAAGCGCTTCTGGGAGGCCCAGTATAAATCGTTTTGAGAGAG
CTGACGAGACCAAGACGAAGAGGGACAACAACGCACCGGAGCAAGCGCTT
CTGGGAGGCCCAGTATAAATCGTTTTGA
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