mRNA_F-serratus_M_contig1191.1477.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1191.1477.1
Unique NamemRNA_F-serratus_M_contig1191.1477.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1191.1477.1 vs. uniprot
Match: A0A6H5JAC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.120e-22
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:   10 FQEAKKDLVIPTNSGKKYQIKKGDMLHCYHPLVNIDPAAFGPDAKEFKPKRFVGNPDLKKKV 195
            F+ A+ DLV+PT+SG +YQ++KGDML C+HPL++ID A FG DA EFKPKRF+GNPDLK  V
Sbjct:   82 FKTAQMDLVVPTSSGARYQVRKGDMLCCHHPLIHIDEAVFGADATEFKPKRFIGNPDLKDDV 143
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BLAST of mRNA_F-serratus_M_contig1191.1477.1 vs. uniprot
Match: A0A1L3HS58_ECTSI (Epoxyalcohol synthase CYP5164B1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A1L3HS58_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.210e-20
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   10 FQEAKKDLVIPTNSGKKYQIKKGDMLHCYHPLVNIDPAAFGPDAKEFKPKRFVGNPDLKKKV 195
            F+ A+ DLV+PT+SG +YQ++KGDML C+HPL++ID A FG DA EFKPKRF+GNP LK  V
Sbjct:  339 FKTAQMDLVVPTSSGARYQVRKGDMLCCHHPLIHIDEAVFGADATEFKPKRFIGNPGLKDDV 400
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BLAST of mRNA_F-serratus_M_contig1191.1477.1 vs. uniprot
Match: D8LQS9_ECTSI (Cytochrome P450 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS9_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.470e-18
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   16 EAKKDLVIPTNSGKKYQIKKGDMLHCYHPLVNIDPAAFGPDAKEFKPKRFVGNPDLKKKV 195
            EAK DLV+PT+SGKKY++KKG++L     L  +DP+ FGPDA+EF P+RFV NP+LKKKV
Sbjct:  152 EAKMDLVVPTSSGKKYKVKKGELLMMEQALGQMDPSVFGPDAREFNPERFVDNPELKKKV 211
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BLAST of mRNA_F-serratus_M_contig1191.1477.1 vs. uniprot
Match: A0A6H5KGZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ6_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.700e-18
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   16 EAKKDLVIPTNSGKKYQIKKGDMLHCYHPLVNIDPAAFGPDAKEFKPKRFVGNPDLKKKV 195
            EAK DLV+PT+SGKKYQ+KKG++L     L  +DP+ FGPDA+EF P+RFV NP+LKKKV
Sbjct:  376 EAKMDLVVPTSSGKKYQVKKGELLMMEQALGQMDPSVFGPDAREFNPERFVDNPELKKKV 435
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BLAST of mRNA_F-serratus_M_contig1191.1477.1 vs. uniprot
Match: A0A6H5KDN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDN7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.690e-18
Identity = 33/58 (56.90%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:   28 DLVIPTNSGKKYQIKKGDMLHCYHPLVNIDPAAFGPDAKEFKPKRFVGNPDLKKKVSF 201
            D+++PT+SG KY++KKGD+L C   L  +DP+ FGPDA+EFKP+RFVGNP+ +K++ F
Sbjct:    2 DVIVPTSSGWKYKVKKGDVLLCKQALEQMDPSVFGPDAREFKPERFVGNPEPRKRMVF 59
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1191.1477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JAC4_9PHAE1.120e-2266.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1L3HS58_ECTSI2.210e-2064.52Epoxyalcohol synthase CYP5164B1 n=2 Tax=Ectocarpus... [more]
D8LQS9_ECTSI2.470e-1863.33Cytochrome P450 n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5KGZ6_9PHAE2.700e-1865.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDN7_9PHAE3.690e-1856.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1191contigF-serratus_M_contig1191:12712..13354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size204
Cds size204
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929088.5234542-CDS-F-serratus_M_contig1191:12711..127771622929088.5234542-CDS-F-serratus_M_contig1191:12711..12777Fucus serratus maleCDSF-serratus_M_contig1191 12712..12777 +
1690962699.42783-CDS-F-serratus_M_contig1191:12711..127771690962699.42783-CDS-F-serratus_M_contig1191:12711..12777Fucus serratus maleCDSF-serratus_M_contig1191 12712..12777 +
1622929088.5330265-CDS-F-serratus_M_contig1191:13216..133541622929088.5330265-CDS-F-serratus_M_contig1191:13216..13354Fucus serratus maleCDSF-serratus_M_contig1191 13217..13354 +
1690962699.4370296-CDS-F-serratus_M_contig1191:13216..133541690962699.4370296-CDS-F-serratus_M_contig1191:13216..13354Fucus serratus maleCDSF-serratus_M_contig1191 13217..13354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1191.1477.1prot_F-serratus_M_contig1191.1477.1Fucus serratus malepolypeptideF-serratus_M_contig1191 12712..13354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1191.1477.1

>prot_F-serratus_M_contig1191.1477.1 ID=prot_F-serratus_M_contig1191.1477.1|Name=mRNA_F-serratus_M_contig1191.1477.1|organism=Fucus serratus male|type=polypeptide|length=68bp
MEPFQEAKKDLVIPTNSGKKYQIKKGDMLHCYHPLVNIDPAAFGPDAKEF
KPKRFVGNPDLKKKVSF*
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mRNA from alignment at F-serratus_M_contig1191:12712..13354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1191.1477.1 ID=mRNA_F-serratus_M_contig1191.1477.1|Name=mRNA_F-serratus_M_contig1191.1477.1|organism=Fucus serratus male|type=mRNA|length=643bp|location=Sequence derived from alignment at F-serratus_M_contig1191:12712..13354+ (Fucus serratus male)
ATGGAACCTTTTCAGGAGGCGAAGAAAGACCTCGTGATACCCACCAACTC
GGGCAAGAAGTACCAGGTGCTGTTGACATCACGTAAAACGTACCTGGCAT
TGAGTACATACTGGTTCGTACTATATCATGTATTTTATTTCCCGCGTCTC
CGACGCCTCCATCTACATTCCTCACCTTGACGTGAACGTCTGGGTGAGAA
CCCCATATCTGGAATATGATCGAATTAAGTGACAAAATGATTGTCGAATG
TATGCACACTACAATTGTCAAAGCGGAAACTCCGCAGAGGCAGCAATAAC
TATGATCGGTGTACCAGACCATTAAAAAACACAACAAAAAAGAAAATGTG
CGTGAAGTTTGGGCAAGTATCAAGCAAGCTCCGTCCGCGGTATTTTCCTT
CCTTGCCGAGAGATTCGAGGCACGGTATCATCGTACAGGGGACAAGTCTG
CCCATTGAAACTTCCTTCCGGAACCTTATTCCCATCGCAACCGCAcCCCT
CATAGATCAAGAAGGGCGATATGCTGCACTGTTACCACCCGCTGGTCAAC
ATCGACCCTGCGGCGTTCGGCCCTGACGCCAAAGAGTTCAAGCCGAAGCG
CTTCGTGGGAAACCCCGACCTCAAGAAGAAAGTGAGTTTTTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1191:12712..13354+

>mRNA_F-serratus_M_contig1191.1477.1 ID=mRNA_F-serratus_M_contig1191.1477.1|Name=mRNA_F-serratus_M_contig1191.1477.1|organism=Fucus serratus male|type=CDS|length=408bp|location=Sequence derived from alignment at F-serratus_M_contig1191:12712..13354+ (Fucus serratus male)
ATGGAACCTTTTCAGGAGGCGAAGAAAGACCTCGTGATACCCACCAACTC
GGGCAAGAAGTACCAGATGGAACCTTTTCAGGAGGCGAAGAAAGACCTCG
TGATACCCACCAACTCGGGCAAGAAGTACCAGATCAAGAAGGGCGATATG
CTGCACTGTTACCACCCGCTGGTCAACATCGACCCTGCGGCGTTCGGCCC
TGACGCCAAAGAGTTCAAGCCGAAGCGCTTCGTGGGAAACCCCGACCTCA
AGAAGAAAGTGAGTTTTTAGATCAAGAAGGGCGATATGCTGCACTGTTAC
CACCCGCTGGTCAACATCGACCCTGCGGCGTTCGGCCCTGACGCCAAAGA
GTTCAAGCCGAAGCGCTTCGTGGGAAACCCCGACCTCAAGAAGAAAGTGA
GTTTTTAG
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