mRNA_F-serratus_M_contig119.1472.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig119.1472.1
Unique NamemRNA_F-serratus_M_contig119.1472.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig119.1472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig119contigF-serratus_M_contig119:432691..434638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size268
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig119.1472.1prot_F-serratus_M_contig119.1472.1Fucus serratus malepolypeptideF-serratus_M_contig119 432704..434572 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.1351438-UTR-F-serratus_M_contig119:432690..4327031622929087.1351438-UTR-F-serratus_M_contig119:432690..432703Fucus serratus maleUTRF-serratus_M_contig119 432691..432703 -
1690962699.0932453-UTR-F-serratus_M_contig119:432690..4327031690962699.0932453-UTR-F-serratus_M_contig119:432690..432703Fucus serratus maleUTRF-serratus_M_contig119 432691..432703 -
1622929087.1899114-UTR-F-serratus_M_contig119:434572..4346381622929087.1899114-UTR-F-serratus_M_contig119:434572..434638Fucus serratus maleUTRF-serratus_M_contig119 434573..434638 -
1690962699.1345162-UTR-F-serratus_M_contig119:434572..4346381690962699.1345162-UTR-F-serratus_M_contig119:434572..434638Fucus serratus maleUTRF-serratus_M_contig119 434573..434638 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.153123-CDS-F-serratus_M_contig119:432703..4328201622929087.153123-CDS-F-serratus_M_contig119:432703..432820Fucus serratus maleCDSF-serratus_M_contig119 432704..432820 -
1690962699.1011527-CDS-F-serratus_M_contig119:432703..4328201690962699.1011527-CDS-F-serratus_M_contig119:432703..432820Fucus serratus maleCDSF-serratus_M_contig119 432704..432820 -
1622929087.170143-CDS-F-serratus_M_contig119:434500..4345721622929087.170143-CDS-F-serratus_M_contig119:434500..434572Fucus serratus maleCDSF-serratus_M_contig119 434501..434572 -
1690962699.1128817-CDS-F-serratus_M_contig119:434500..4345721690962699.1128817-CDS-F-serratus_M_contig119:434500..434572Fucus serratus maleCDSF-serratus_M_contig119 434501..434572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig119.1472.1

>prot_F-serratus_M_contig119.1472.1 ID=prot_F-serratus_M_contig119.1472.1|Name=mRNA_F-serratus_M_contig119.1472.1|organism=Fucus serratus male|type=polypeptide|length=63bp
MDSEGMPSSAGGQFGGGTLGGSGMVREARIISAQGCESNWDANQMRELLY
YDRSVHRHLHLR*
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mRNA from alignment at F-serratus_M_contig119:432691..434638-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig119.1472.1 ID=mRNA_F-serratus_M_contig119.1472.1|Name=mRNA_F-serratus_M_contig119.1472.1|organism=Fucus serratus male|type=mRNA|length=1948bp|location=Sequence derived from alignment at F-serratus_M_contig119:432691..434638- (Fucus serratus male)
TATAAGGAGAGAGTCTAGTGTGGAAGATTTGTGGTCGCTGGGTCTTGGAT
CGAGGGAGATTCTAAGATGGATAGCGAAGGAATGCCGAGCTCGGCTGGAG
GCCAGTTCGGTGGCGGTACTCTTGGAGGAAGTGGCATGGTGAGCAACTTG
GTTTTGAACTCGACTGAGGTTAGGCCACCATACTCTTTATTAGTACAAAA
AGTTCTCTCTCCGAAGCTGTTGCGAAACAGTTTAGGACAGCGTATGTTGA
TTACAGAGAGAAGATTGCGGTTCAGACCGCTCAGGATGGAATTCCTAGGC
GCATTGCACGAGTTGACGAGTTGATGGCGTTGAGTCATCGGCGTACTATC
GCGATGATGTTTTACAGAAACGCTCGTGATTTGAGTGAACTGCAACTTTG
GGACGGCCTAGGAAAGATTGCCAAGGTTCAGCGTGGCGCTGATATTGATG
CTTACCAACTGCAGCGTGGCCTGCAACAACTATTGCAGTGGAGTGCCAAG
CGTTCTCTTTCCAATAACTTGACCCACGTGACTGGATGTCTTGTGGGATA
CCTGGAGGAGAGCAATCTAACCAGTACATTTATGAAGGAGGATGGTAGCT
GGTTAAAAGGTCCGGGAAAAATTGTTGCACGCCTGTGGATTGATGGTCTG
ACCCCGTCGAGGTTCCAGAGGGCAGTGCGCTGCCGCTGTGAACTCATGTC
TGTTGAGGGTGACCCTGCCGAGGTAATGGAGGTCACGCAGAAGATGGTGG
AAAAGTATGAGAAGGCTGAACAGCTTCTCGGGGTCAGTGTCCCAGTGGGC
AATGGCAACGGTGATGGCGGCAAGGTAGCCGTTGGGGCTTCAGGTTTGTC
AGCTGGATTAAGCCCGAAAAAGACTTCGTCATTTATGGGGCGATGTGATG
GGTCTGGTAAATCTCGGTATATCAGTACTGAGAAGCCGAAAGATGAGTCT
GGTCAATCTCGGTCTAATATGTCTGACGAATCTCGGTCTATTAGTACTGA
GAGGCCGAAAATGGTATCGGCGGCGGCTGTGTCGCAGGGACCTTCTACCC
AGTTTCAGGCCCTGAAAGAGGAGGAAGGTCCATGGAGTAGGACTCGGTTG
CGGCAGCAGAGGGGCGACAGGAGCGTCTCGCATCGGGCCGTGTTTGTGGG
GCCACTATCGTCGGATAGTGGTGGTGATGACCATGTATGGGTGAAGATGC
CGCGAGCTGCCGTCGAGGAGCAGCTAGCTGCTGGACCGGAGTCTTCCAAC
ATTGGTGATTCGGAGAGTGAGACATCTGTGACTCATTCTCGACGCATCAC
TGGTGGTACGCGCATGGAAGCGCTTGGTGATGTGGACATTCGGGCGGTTG
ATGTCGAGCCAGTTCAACTTCAATGCTCGTCAAACGTCGTTGTGCCGGGA
GATATGGTCGGTGACTCAATGACGGTGGGCACTGTTTTAGACTCCGGATC
GGGTAATACTTGTCCGTCGGAACAGTTGACGCAGCAGATGGAGCAACATT
TCCGAGACGAACCACAAGTTCATCCATATGTGAAGGAGATGTCTGTTCCG
CTGGCGAATAGACAGAAGGTTGTGGTGAGGAATCAACCAGCAAAAAAATC
GAAAGTACAAGCCGGCGCTCGCGAGGAGTCTACGAGACTGTCGATTGGCC
GGCAGCAACGAGAGACGGCTTCGACTGAGCAAAGCAAGCAGTTCGACCCA
GGAGGGTGACGGAGGAGACTTTACTTTCCGTCGAAAACGGATTCCGCTGT
GCTTTTCTTTGTCTGTATGTCTCGTATTTCTACTTTGTTGTATTTTTTCT
GTCTTGTCCGCAAAGCAGGTACGAGAGGCGAGGATAATTTCCGCTCAAGG
ATGCGAGAGCAATTGGGATGCAAACCAGATGCGTGAACTGCTGTACTACG
ACAGGAGCGTGCATCGTCATCTCCATTTGCGTTAACGAAGGGTAGATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig119:432691..434638-

>mRNA_F-serratus_M_contig119.1472.1 ID=mRNA_F-serratus_M_contig119.1472.1|Name=mRNA_F-serratus_M_contig119.1472.1|organism=Fucus serratus male|type=CDS|length=378bp|location=Sequence derived from alignment at F-serratus_M_contig119:432691..434638- (Fucus serratus male)
ATGGATAGCGAAGGAATGCCGAGCTCGGCTGGAGGCCAGTTCGGTGGCGG
TACTCTTGGAGGAAGTGGCATGATGGATAGCGAAGGAATGCCGAGCTCGG
CTGGAGGCCAGTTCGGTGGCGGTACTCTTGGAGGAAGTGGCATGGTACGA
GAGGCGAGGATAATTTCCGCTCAAGGATGCGAGAGCAATTGGGATGCAAA
CCAGATGCGTGAACTGCTGTACTACGACAGGAGCGTGCATCGTCATCTCC
ATTTGCGTTAAGTACGAGAGGCGAGGATAATTTCCGCTCAAGGATGCGAG
AGCAATTGGGATGCAAACCAGATGCGTGAACTGCTGTACTACGACAGGAG
CGTGCATCGTCATCTCCATTTGCGTTAA
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