mRNA_F-serratus_M_contig1188.1469.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1188.1469.1
Unique NamemRNA_F-serratus_M_contig1188.1469.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 3.760e-62
Identity = 116/250 (46.40%), Postives = 170/250 (68.00%), Query Frame = 2
Query:  524 NLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
            +LE+G L ++QTAY +++  ++ + + S+IP SPGVD+ P  DD+ GG  E+P+ R  +GS+M +S  +RPDI+  +RA A H+H  + RHWKA+ +I AY+  T+ +G+ + RGSGL   V+ D A YA A  DRRSVSG+A  +G T I   S TQ  V+ ++ E EY+A  +  KEALF+RAVL F+ PE SG  +  + DN+GA A+  +P S++RSKHIDV+ HFIRG  R+G++ +  V T+EQ
Sbjct:  239 DLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGG--EWPV-REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVD-ASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQ 483          
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 1.670e-56
Identity = 112/282 (39.72%), Postives = 172/282 (60.99%), Query Frame = 2
Query:  428 ECVREILDATEGKISRKKQRGTKNIHRLCFRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
            E   E+L +   K   K     +         ++E+G L ++QTAY +++ A++ + + S IP +PG DL P  +D+ GG  E+P+ R  +GS+M +S  +RPD++  +RA A H+H  + RHW A+Q+I  Y+  T+ +G+ + RGSGL   V+ D A YA  + DRRSVSG+A  +G T +   S TQ  V+ ++ E EY+A  +  KEALF+RAVL+F+ PE  G  +  + DN+GA A+  +P S+ R+ HIDV+ HFIRG   +G++ V  V T EQ
Sbjct:  455 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGG--EWPV-REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD-ASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMALVQNPLSSGRTTHIDVRFHFIRGLFGSGDISVKFVPTTEQ 731          
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 4.190e-56
Identity = 114/282 (40.43%), Postives = 173/282 (61.35%), Query Frame = 2
Query:  428 ECVREILDATEGKISRKKQRGTKNIHRLCFRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
            E   E+L +   K   K     +         ++E+G L ++QTAY +++  ++ + + S IP +PG DL P  +D+ GG  E+P+ R  +GS+M +S  +RPD++  +RA A H+H  + RHW A+Q+I  Y+  T+ +G+ + RGSGL   V+ D A YA  + DRRSVSG+A  +G T +   S TQ  V+ ++ E EY+A  +  KEALF+RAVL F+ PE SG  +  + DN+GA A+  +P S+ R+KHIDV+ HFIRG  R+G++ V  V T EQ
Sbjct:  944 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWPV-REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD-ASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQ 1220          
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 4.690e-56
Identity = 114/282 (40.43%), Postives = 173/282 (61.35%), Query Frame = 2
Query:  428 ECVREILDATEGKISRKKQRGTKNIHRLCFRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
            E   E+L +   K   K     +         ++E+G L ++QTAY +++  ++ + + S IP +PG DL P  +D+ GG  E+P+ R  +GS+M +S  +RPD++  +RA A H+H  + RHW A+Q+I  Y+  T+ +G+ + RGSGL   V+ D A YA  + DRRSVSG+A  +G T +   S TQ  V+ ++ E EY+A  +  KEALF+RAVL F+ PE SG  +  + DN+GA A+  +P S+ R+KHIDV+ HFIRG  R+G++ V  V T EQ
Sbjct: 1323 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWPV-REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD-ASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQ 1599          
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 4.740e-56
Identity = 114/282 (40.43%), Postives = 173/282 (61.35%), Query Frame = 2
Query:  428 ECVREILDATEGKISRKKQRGTKNIHRLCFRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
            E   E+L +   K   K     +         ++E+G L ++QTAY +++  ++ + + S IP +PG DL P  +D+ GG  E+P+ R  +GS+M +S  +RPD++  +RA A H+H  + RHW A+Q+I  Y+  T+ +G+ + RGSGL   V+ D A YA  + DRRSVSG+A  +G T +   S TQ  V+ ++ E EY+A  +  KEALF+RAVL F+ PE SG  +  + DN+GA A+  +P S+ R+KHIDV+ HFIRG  R+G++ V  V T EQ
Sbjct: 1343 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWPV-REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD-ASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQ 1619          
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 4.800e-56
Identity = 114/282 (40.43%), Postives = 173/282 (61.35%), Query Frame = 2
Query:  428 ECVREILDATEGKISRKKQRGTKNIHRLCFRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
            E   E+L +   K   K     +         ++E+G L ++QTAY +++  ++ + + S IP +PG DL P  +D+ GG  E+P+ R  +GS+M +S  +RPD++  +RA A H+H  + RHW A+Q+I  Y+  T+ +G+ + RGSGL   V+ D A YA  + DRRSVSG+A  +G T +   S TQ  V+ ++ E EY+A  +  KEALF+RAVL F+ PE SG  +  + DN+GA A+  +P S+ R+KHIDV+ HFIRG  R+G++ V  V T EQ
Sbjct: 1486 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWPV-REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD-ASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQ 1762          
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 6.600e-56
Identity = 116/251 (46.22%), Postives = 170/251 (67.73%), Query Frame = 2
Query:  524 NLESGV-LEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
            +LE+G+ L ++QTAY + +  ++ + + S+IP SPGVD+ P  DD+ GG  E+P+ R  +GS+M +S  +RPDI+  +RA A H+H  + RHWKA+ +I AY+  T+ +G+ + RGSGL   V+ D A YA A  DRRSVSG+A  +G T I   S TQ  V+ ++ E EY+A  +  KEALF+RAVL F+ PE SG  +  + DN+GA A+  +P S++RSKHIDV+ HFIRG  R+G++ +  V T+EQ
Sbjct: 1628 DLEAGMTLRISQTAYID-IVNRFDVQSTSSIPASPGVDIGPKRDDESGG--EWPV-REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVD-ASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQ 1872          
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 4.950e-53
Identity = 102/254 (40.16%), Postives = 153/254 (60.24%), Query Frame = 2
Query:  515 FRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKP-TVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
            F  + E+G +E++Q +Y  ++  ++ +   S+IP SP  D     +D+  G+  F   R +VGSLM ++   RPDI+  LRA   HSH     HWKA Q+I  Y++ T ++ LKF   + +   T+   DAD+A+ +NDRRSVSG  V++    + W S TQKCV+ +  E EY A+ D  K+ALF+  +L FL+P  +  ++D + DNE A A+A +P S+SRSKHIDV+ HF+R     G + V HV + EQ
Sbjct:   53 FVRDREAGTIEISQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPF---REVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQFLRPSANPRKIDVLEDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQ 303          
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 5.300e-53
Identity = 114/289 (39.45%), Postives = 171/289 (59.17%), Query Frame = 2
Query:  428 ECVREILDATEGKISRKKQRGTKNIHRLCFRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATC-------EGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
            E   E+L +   K   K     +         ++E+G L ++QTAY +++  ++ + + S IP SPGVDL P  DD+ GG  E+P+ R  +GS+M +S  +RPD++  +RA A H+H  + RHW A+Q+I  Y+  T+ +G+ + RGSGL   V+ D A YA  + DRRSVSG+A  +G T +   S TQ  V+ ++        E EY    +  KEALF+RAVL F+ PE SG  +  + DN+GA A+  +P S+ R+KHIDV+ HFIR   R+G++ V  + T EQ
Sbjct:  498 EDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGG--EWPV-REAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVD-ASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTXXXXXXTEAEYFTAGECVKEALFVRAVLSFVAPETSGSSIQVL-DNQGAMALVQNPLSSGRTKHIDVRFHFIRVLFRSGDISVKFIPTTEQ 780          
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 6.870e-53
Identity = 112/284 (39.44%), Postives = 166/284 (58.45%), Query Frame = 2
Query:  428 ECVREILDATEGKISRKKQRGTKNIHRLC-FRSNLESGVLEMNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPLVGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYIGLKFVRGSGLKP-TVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQKCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGAKAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ 1273
            + + E++ A  G     K  G       C F  + E+G +EM+Q +Y  ++  ++ +   S+IP SP  D     +D+  G+  F   R +VGSLM ++   RPDI+  +RA A HSH     HWKA Q+I  Y++ T ++ LKF   + +   T+   DAD+A+ +NDRRSVSG  V++    + W S TQKCV+ +T E EY+A+ D  KEALF+  +L FL+P     ++D + DNEGA A+A +P S+SRSKHIDV+ HF+R     G + V HV + EQ
Sbjct:  654 KSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPF---REVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQ 934          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1188.1469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE3.760e-6246.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K274_9PHAE1.670e-5639.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE4.190e-5640.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE4.690e-5640.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE4.740e-5640.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE4.800e-5640.43Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5LGF7_9PHAE6.600e-5646.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBM6_9PHAE4.950e-5340.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE5.300e-5339.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE6.870e-5339.44Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1188contigF-serratus_M_contig1188:211215..212487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score134.8
Seed ortholog evalue5.3e-29
Seed eggNOG ortholog5111.M1W6X0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs21T6K@147550,38V3R@33154,3G6JD@34397,3Q0A2@4751,3RQRT@4890,3TV77@5125,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelClavicipitaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size1273
Cds size726
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.939786-UTR-F-serratus_M_contig1188:211214..2117611622929086.939786-UTR-F-serratus_M_contig1188:211214..211761Fucus serratus maleUTRF-serratus_M_contig1188 211215..211761 +
1690962699.0467744-UTR-F-serratus_M_contig1188:211214..2117611690962699.0467744-UTR-F-serratus_M_contig1188:211214..211761Fucus serratus maleUTRF-serratus_M_contig1188 211215..211761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.984907-CDS-F-serratus_M_contig1188:211761..2124871622929086.984907-CDS-F-serratus_M_contig1188:211761..212487Fucus serratus maleCDSF-serratus_M_contig1188 211762..212487 +
1690962699.0590308-CDS-F-serratus_M_contig1188:211761..2124871690962699.0590308-CDS-F-serratus_M_contig1188:211761..212487Fucus serratus maleCDSF-serratus_M_contig1188 211762..212487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1188.1469.1prot_F-serratus_M_contig1188.1469.1Fucus serratus malepolypeptideF-serratus_M_contig1188 211762..212487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1188.1469.1

>prot_F-serratus_M_contig1188.1469.1 ID=prot_F-serratus_M_contig1188.1469.1|Name=mRNA_F-serratus_M_contig1188.1469.1|organism=Fucus serratus male|type=polypeptide|length=242bp
MNQTAYAENLAAQYGISAISNIPGSPGVDLCPTNDDKPGGNDEFPLYRPL
VGSLMSLSVMARPDIATMLRACAHHSHNSSARHWKALQQIAAYIISTKYI
GLKFVRGSGLKPTVFADDADYAAASNDRRSVSGVAVILGDTAIGWESYTQ
KCVTTATCEGEYVALCDASKEALFMRAVLIFLQPELSGMRVDFVGDNEGA
KAIANSPSSASRSKHIDVKLHFIRGWARAGEVRVLHVGTAEQ
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mRNA from alignment at F-serratus_M_contig1188:211215..212487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1188.1469.1 ID=mRNA_F-serratus_M_contig1188.1469.1|Name=mRNA_F-serratus_M_contig1188.1469.1|organism=Fucus serratus male|type=mRNA|length=1273bp|location=Sequence derived from alignment at F-serratus_M_contig1188:211215..212487+ (Fucus serratus male)
AGGTCCCGTTTAGTGTCGAAGGGTTTCAGTAAGGTGGCAGGCGTCGACTA CAGCGAGACGACTTTTCCAACGCCTGCTGCGGCCCCTGTCAAGATGATAG CCGCAGTTGCTAGGAAAAGGGCTTGCCGATGTACCATCTGGACATGTCTC AGGCATTCGTGCAGGCTCCTCTGAAGGAGGAAATGTTTATGCTCCTCTCC CGGGGTTGTGGTGAGCTGTCTGGAAAGGTCGTGCGACTTCTGAAGTGTCA GTACGGTCTCAAGCAGGCCGGTAGAGAGTGGCACGTGTTACTGGTAAACT GGCTAGTAAAAAATATTGGTCTCGAACAATGCAAGGCAGAGCCGTGTGTT TTGAGGCTGATGGGGAAGGATGAGGTGTCGTTGATGGTTGGAGTCCACGT GGATGACATCATAGTTTCTGGCGGTAAGAGTGCGTGCGAGAAATTCTTGA CGCAACTGAAGGAAAGATTTCCCGTAAAAAACAAAGGGGAACCAAAAATA TACACCGGTTGTGCTTTCGTTCCAACCTGGAATCAGGCGTGCTAGAGATG AACCAAACTGCATATGCGGAAAACCTGGCAGCGCAGTATGGGATTTCCGC GATTTCGAACATCCCAGGTAGCCCGGGTGTAGACTTATGTCCTACGAACG ATGACAAGCCGGGGGGGAATGACGAGTTTCCTCTGTACCGACCCCTAGTT GGTAGCCTGATGTCGCTATCAGTCATGGCGAGACCGGATATCGCTACTAT GTTACGTGCATGCGCGCACCACAGCCATAACTCTAGTGCCCGGCACTGGA AGGCTCTACAGCAGATCGCCGCGTACATCATTTCTACGAAATATATAGGT CTGAAGTTTGTGCGTGGTTCTGGCTTGAAGCCTACTGTGTTCGCTGATGA TGCTGATTACGCGGCGGCATCTAATGATAGAAGGTCCGTGTCTGGTGTGG CAGTGATATTGGGGGACACAGCCATTGGCTGGGAGAGTTATACGCAGAAA TGTGTTACGACTGCCACGTGTGAAGGCGAGTACGTTGCTCTTTGTGATGC ATCCAAGGAAGCGCTCTTTATGAGAGCCGTGCTGATATTCCTGCAGCCTG AGCTGAGCGGGATGAGGGTAGACTTTGTCGGCGACAATGAAGGTGCGAAA GCGATCGCGAACAGCCCAAGTAGCGCGTCTAGGAGTAAACACATCGACGT GAAGCTCCATTTTATCCGGGGATGGGCTCGCGCGGGGGAAGTTCGTGTCT TGCACGTGGGAACAGCAGAGCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1188:211215..212487+

>mRNA_F-serratus_M_contig1188.1469.1 ID=mRNA_F-serratus_M_contig1188.1469.1|Name=mRNA_F-serratus_M_contig1188.1469.1|organism=Fucus serratus male|type=CDS|length=1452bp|location=Sequence derived from alignment at F-serratus_M_contig1188:211215..212487+ (Fucus serratus male)
ATGAACCAAACTGCATATGCGGAAAACCTGGCAGCGCAGTATGGGATTTC
CGCGATTTCGAACATCCCAGGTAGCCCGGGTGTAGACTTATGTCCTACGA
ACGATGACAAGCCGGGGGGGAATGACGAGTTTCCTCTGTACCGACCCCTA
GTTGGTAGCCTGATGTCGCTATCAGTCATGGCGAGACCGGATATCGCTAC
TATGTTACGTGCATGCGCGCACCACAGCCATAACTCTAGTGCCCGGCACT
GGAAGGCTCTACAGCAGATCGCCGCGTACATCATTTCTACGAAATATATA
GGTCTGAAGTTTGTGCGTGGTTCTGGCTTGAAGCCTACTGTGTTCGCTGA
TGATGCTGATTACGCGGCGGCATCTAATGATAGAAGGTCCGTGTCTGGTG
TGGCAGTGATATTGGGGGACACAGCCATTGGCTGGGAGAGTTATACGCAG
AAATGTGTTACGACTGCCACGTGTGAAGGCGAGTACGTTGCTCTTTGTGA
TGCATCCAAGGAAGCGCTCTTTATGAGAGCCGTGCTGATATTCCTGCAGC
CTGAGCTGAGCGGGATGAGGGTAGACTTTGTCGGCGACAATGAAGGTGCG
AAAGCGATCGCGAACAGCCCAAGTAGCGCGTCTAGGAGTAAACACATCGA
CGTGAAGCTCCATTTTATCCGGGGATGGGCTCGCGCGGGGGAAGTTCGTG
TCTTGCACGTGGGAACAGCAGAGCAAATGAACCAAACTGCATATGCGGAA
AACCTGGCAGCGCAGTATGGGATTTCCGCGATTTCGAACATCCCAGGTAG
CCCGGGTGTAGACTTATGTCCTACGAACGATGACAAGCCGGGGGGGAATG
ACGAGTTTCCTCTGTACCGACCCCTAGTTGGTAGCCTGATGTCGCTATCA
GTCATGGCGAGACCGGATATCGCTACTATGTTACGTGCATGCGCGCACCA
CAGCCATAACTCTAGTGCCCGGCACTGGAAGGCTCTACAGCAGATCGCCG
CGTACATCATTTCTACGAAATATATAGGTCTGAAGTTTGTGCGTGGTTCT
GGCTTGAAGCCTACTGTGTTCGCTGATGATGCTGATTACGCGGCGGCATC
TAATGATAGAAGGTCCGTGTCTGGTGTGGCAGTGATATTGGGGGACACAG
CCATTGGCTGGGAGAGTTATACGCAGAAATGTGTTACGACTGCCACGTGT
GAAGGCGAGTACGTTGCTCTTTGTGATGCATCCAAGGAAGCGCTCTTTAT
GAGAGCCGTGCTGATATTCCTGCAGCCTGAGCTGAGCGGGATGAGGGTAG
ACTTTGTCGGCGACAATGAAGGTGCGAAAGCGATCGCGAACAGCCCAAGT
AGCGCGTCTAGGAGTAAACACATCGACGTGAAGCTCCATTTTATCCGGGG
ATGGGCTCGCGCGGGGGAAGTTCGTGTCTTGCACGTGGGAACAGCAGAGC
AA
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