mRNA_F-serratus_M_contig1187.1468.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1187.1468.1
Unique NamemRNA_F-serratus_M_contig1187.1468.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1187.1468.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 8.120e-26
Identity = 75/214 (35.05%), Postives = 109/214 (50.93%), Query Frame = 1
Query:    1 DLCDEVRTAVKVCVEYMGKKNLGEVGNPVERISTLLDPRRKTLSKQECVNGSPDVKQLAINDLKDAADLFEGSAPLQITVPAASXXXXXXXXXXXXXXXXXXXXGGNGATGPLAKKPRVLSVMEQRRANRLAAAGSAGAAGDEAESGSGPSITHKVRVLQELARYVAEGVELEEDGFSLPGFWRRRGSSKLSQATGEVIEEAAMPHLALLARLY 642
            DL  E +  ++V  E M +K +G     VER+S L+DPRRK+L   +  NGS D+++ A +DLK     F+         PA                               A K + LS +E+RRA R+AAA + G      E  S PS T +V + +E+  Y+AE  +L+ DGF++ G+W RRG+  +S  TG+V   A MP+LA +ARLY
Sbjct:  569 DLTAEAQCVLEVLQEKMREKGMGSAQVAVERLSALMDPRRKSLDSDQLENGSADLRKKAEDDLKAVIAKFDVGPATAAPAPAPVMNLDPVEP---------------------APKKKKLSRLEERRAARVAAATTGGDETGSLEDQS-PSTTRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLY 760          
BLAST of mRNA_F-serratus_M_contig1187.1468.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.510e-21
Identity = 69/214 (32.24%), Postives = 109/214 (50.93%), Query Frame = 1
Query:    1 DLCDEVRTAVKVCVEYMGKKNLGEVGNPVERISTLLDPRRKTLSKQECVNGSPDVKQLAINDLKDAADLFEGSAPLQITVPAASXXXXXXXXXXXXXXXXXXXXGGNGATGPLAKKPRVLSVMEQRRANRLAAAGSAGAAGDEAESGSGPSITHKVRVLQELARYVAEGVELEEDGFSLPGFWRRRGSSKLSQATGEVIEEAAMPHLALLARLY 642
            +L    +  ++V ++ M +K +G+    VER+S L+DPRRK+L   +  NGS  +++ A  DLK     F+    +Q + PA +                             A K + LS +E+RRA R+AAA   GA+G     GS  +   +V + +E+  Y+AE  ++E D F++ GFW RRG+  +   TG V   A MP+LA +ARL+
Sbjct:  558 ELSSAAQGVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSLDGAKLENGSATLRKKAEEDLKAVIAQFD----VQPSEPAPAPAPVLNVDPVEP-----------------ASKRKKLSRLEERRAARVAAASDGGASGSVQAQGS--ATNRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLF 748          
BLAST of mRNA_F-serratus_M_contig1187.1468.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.360e-21
Identity = 68/214 (31.78%), Postives = 110/214 (51.40%), Query Frame = 1
Query:    1 DLCDEVRTAVKVCVEYMGKKNLGEVGNPVERISTLLDPRRKTLSKQECVNGSPDVKQLAINDLKDAADLFEGSAPLQITVPAASXXXXXXXXXXXXXXXXXXXXGGNGATGPLAKKPRVLSVMEQRRANRLAAAGSAGAAGDEAESGSGPSITHKVRVLQELARYVAEGVELEEDGFSLPGFWRRRGSSKLSQATGEVIEEAAMPHLALLARLY 642
            DL  E +  ++V +E MG+K + +    VER+S L+DPRRK+L+ ++  NGS  +++ A  DLK     F+    +Q + PA++                             A K + LS +E+RR  R+AAA   GA+G     GS  +   +V + +++  Y+AE  +++ D F + G W RRG+  +   TG+V     MP+LA +ARLY
Sbjct:  534 DLSLEAQEVLEVLLEVMGEKQVEKAVQQVERLSALMDPRRKSLNGEQLENGSAHLRKRAEEDLKAVIAQFD----VQPSEPASAPAPVLNVDPVEP-----------------APKRKKLSRLEERRGARVAAASGVGASGSVQAQGS--ATNRRVLIERDVLVYLAEKEQVDVDEFKVLGSWSRRGTDSVCATTGQVTSPTEMPYLAFIARLY 724          
BLAST of mRNA_F-serratus_M_contig1187.1468.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.380e-15
Identity = 67/211 (31.75%), Postives = 93/211 (44.08%), Query Frame = 1
Query:   13 EVRTAVKVCVEYMGKKNLGEVGNPVERISTLLDPRRKTLSKQECVNGSPDVKQLAINDLKDAADLF-EGSAPLQITVPAASXXXXXXXXXXXXXXXXXXXXGGNGATGPLAKKPRVLSVMEQRRANRLAAAGSAGAAGDEAESGSGPSITHKVRVLQELARYVAEGVELEEDGFSLPGFWRRRGSSKLSQATGEVIEEAAMPHLALLARLY 642
            E +  V+V  E M +K +G+    VER+S LLDPRRKTL      NGS D+K  A  DLK     F + SAP   + PA +                           P  KK    S +E                              +V + +E+  Y+AE  +++ D F+L GFW RRG+  +S ATG+V   A MP+LA +ARL+
Sbjct:  372 EAQDVVQVLREMMDEKGVGKALQRVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLKAFTGKFAQESAP---STPAPAPVVNVDTAE------------------PARKKKXPTSRLEXXXXXXXXXXXXXXXXXXGTTDPQAAGTGRRVLIEREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLH 561          
BLAST of mRNA_F-serratus_M_contig1187.1468.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.170e-14
Identity = 67/215 (31.16%), Postives = 94/215 (43.72%), Query Frame = 1
Query:    1 DLCDEVRTAVKVCVEYMGKKNLGEVGNPVERISTLLDPRRKTLSKQECVNGSPDVKQLAINDLKDAADLF-EGSAPLQITVPAASXXXXXXXXXXXXXXXXXXXXGGNGATGPLAKKPRVLSVMEQRRANRLAAAGSAGAAGDEAESGSGPSITHKVRVLQELARYVAEGVELEEDGFSLPGFWRRRGSSKLSQATGEVIEEAAMPHLALLARLY 642
            DL  E +  V+V +E M +K +G+    VER+S LLDPRRKTL      NGS D+K  A  DLK     F + SAP   + PA +                           P  KK    S +                               +V + +E+  Y+AE  +++ D F+  GFW RRG+  +S ATG+V   A MP+LA +ARL+
Sbjct:  400 DLTLEAQDVVQVLLEVMDEKGVGKALQWVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLKAFIGKFAQESAP---STPAPAPVVNVDTAE------------------PARKKXXXTSRLXXXXXXXXXXXXXXXXXXXXXTDPKAAGAGRRVLIEREMLVYLAEQPQVDVDDFNPLGFWNRRGTDSVSAATGKVSSPAEMPYLAFIARLH 593          
BLAST of mRNA_F-serratus_M_contig1187.1468.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 6.790e-14
Identity = 62/214 (28.97%), Postives = 91/214 (42.52%), Query Frame = 1
Query:    1 DLCDEVRTAVKVCVEYMGKKNLGEVGNPVERISTLLDPRRKTLSKQECVNGSPDVKQLAINDLKDAADLFEGSAPLQITVPAASXXXXXXXXXXXXXXXXXXXXGGNGATGPLAKKPRVLSVMEQRRANRLAAAGSAGAAGDEAESGSGPSITHKVRVLQELARYVAEGVELEEDGFSLPGFWRRRGSSKLSQATGEVIEEAAMPHLALLARLY 642
            DL  E +   KV +E M +K +G+    VER+S LLDPRRK L   +  NG  D++  A  DLK     F   +      PA                             P  KK +   + E                    ++   P     V + +E+  Y+AE  +++ DGF+L GFW RRG++ +   TG+V   A MP+LA +ARL+
Sbjct:  253 DLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEADLKKFIATFTAESVPPTPAPAPVVDVQPAE--------------------PALKKKKFSRIEEXXXXXXXXXXXXXXXXTVAPQT---PVTGRHVLIEREVLVYLAEQPQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLH 443          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1187.1468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JGG8_9PHAE8.120e-2635.05Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JRT6_9PHAE1.510e-2132.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ9_9PHAE5.360e-2131.78Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JQI6_9PHAE1.380e-1531.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE1.170e-1431.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE6.790e-1428.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1187contigF-serratus_M_contig1187:139742..140385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size644
Cds size642
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.8962917-CDS-F-serratus_M_contig1187:139741..1403831622929086.8962917-CDS-F-serratus_M_contig1187:139741..140383Fucus serratus maleCDSF-serratus_M_contig1187 139742..140383 +
1690962699.0371192-CDS-F-serratus_M_contig1187:139741..1403831690962699.0371192-CDS-F-serratus_M_contig1187:139741..140383Fucus serratus maleCDSF-serratus_M_contig1187 139742..140383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1187.1468.1prot_F-serratus_M_contig1187.1468.1Fucus serratus malepolypeptideF-serratus_M_contig1187 139742..140383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1187.1468.1

>prot_F-serratus_M_contig1187.1468.1 ID=prot_F-serratus_M_contig1187.1468.1|Name=mRNA_F-serratus_M_contig1187.1468.1|organism=Fucus serratus male|type=polypeptide|length=214bp
DLCDEVRTAVKVCVEYMGKKNLGEVGNPVERISTLLDPRRKTLSKQECVN
GSPDVKQLAINDLKDAADLFEGSAPLQITVPAASASAPASALAPAPAPPP
APAPGGNGATGPLAKKPRVLSVMEQRRANRLAAAGSAGAAGDEAESGSGP
SITHKVRVLQELARYVAEGVELEEDGFSLPGFWRRRGSSKLSQATGEVIE
EAAMPHLALLARLY
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mRNA from alignment at F-serratus_M_contig1187:139742..140385+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1187.1468.1 ID=mRNA_F-serratus_M_contig1187.1468.1|Name=mRNA_F-serratus_M_contig1187.1468.1|organism=Fucus serratus male|type=mRNA|length=644bp|location=Sequence derived from alignment at F-serratus_M_contig1187:139742..140385+ (Fucus serratus male)
GATCTCTGCGACGAGGTGCGGACAGCGGTGAAGGTGTGCGTGGAGTACAT GGGCAAGAAGAACCTGGGCGAGGTGGGCAACCCTGTGGAGCGTATCAGTA CTCTGCTGGACCCGCGGCGGAAAACCCTGTCGAAGCAAGAGTGCGTCAAC GGCAGCCCCGACGTTAAGCAGCTCGCGATCAACGACCTGAAGGATGCGGC GGATTTGTTTGAGGGCTCGGCGCCGCTACAAATTACTGTCCCTGCGGCAT CGGCCTCTGCCCCTGCGTCAGCACTAGCTCCAGCCCCTGCGCCCCCCCCT GCTCCAGCCCCTGGTGGCAACGGGGCCACGGGGCCACTGGCAAAGAAGCC GCGGGTGCTCTCCGTTATGGAGCAGCGACGCGCCAACAGACTGGCTGCTG CTGGGAGTGCGGGTGCCGCTGGAGATGAGGCGGAGAGCGGCTCGGGGCCA AGCATCACGCACAAGGTCCGTGTTCTCCAAGAGCTGGCGAGGTATGTAGC AGAAGGGGTGGAGCTGGAAGAGGACGGATTTTCCTTGCCGGGGTTTTGGC GGCGAAGGGGCTCCTCTAAGCTTTCCCAAGCGACAGGCGAGGTTATCGAG GAAGCTGCTATGCCACATCTCGCACTCCTCGCACGCCTTTACCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1187:139742..140385+

>mRNA_F-serratus_M_contig1187.1468.1 ID=mRNA_F-serratus_M_contig1187.1468.1|Name=mRNA_F-serratus_M_contig1187.1468.1|organism=Fucus serratus male|type=CDS|length=1284bp|location=Sequence derived from alignment at F-serratus_M_contig1187:139742..140385+ (Fucus serratus male)
GATCTCTGCGACGAGGTGCGGACAGCGGTGAAGGTGTGCGTGGAGTACAT
GGGCAAGAAGAACCTGGGCGAGGTGGGCAACCCTGTGGAGCGTATCAGTA
CTCTGCTGGACCCGCGGCGGAAAACCCTGTCGAAGCAAGAGTGCGTCAAC
GGCAGCCCCGACGTTAAGCAGCTCGCGATCAACGACCTGAAGGATGCGGC
GGATTTGTTTGAGGGCTCGGCGCCGCTACAAATTACTGTCCCTGCGGCAT
CGGCCTCTGCCCCTGCGTCAGCACTAGCTCCAGCCCCTGCGCCCCCCCCT
GCTCCAGCCCCTGGTGGCAACGGGGCCACGGGGCCACTGGCAAAGAAGCC
GCGGGTGCTCTCCGTTATGGAGCAGCGACGCGCCAACAGACTGGCTGCTG
CTGGGAGTGCGGGTGCCGCTGGAGATGAGGCGGAGAGCGGCTCGGGGCCA
AGCATCACGCACAAGGTCCGTGTTCTCCAAGAGCTGGCGAGGTATGTAGC
AGAAGGGGTGGAGCTGGAAGAGGACGGATTTTCCTTGCCGGGGTTTTGGC
GGCGAAGGGGCTCCTCTAAGCTTTCCCAAGCGACAGGCGAGGTTATCGAG
GAAGCTGCTATGCCACATCTCGCACTCCTCGCACGCCTTTACGATCTCTG
CGACGAGGTGCGGACAGCGGTGAAGGTGTGCGTGGAGTACATGGGCAAGA
AGAACCTGGGCGAGGTGGGCAACCCTGTGGAGCGTATCAGTACTCTGCTG
GACCCGCGGCGGAAAACCCTGTCGAAGCAAGAGTGCGTCAACGGCAGCCC
CGACGTTAAGCAGCTCGCGATCAACGACCTGAAGGATGCGGCGGATTTGT
TTGAGGGCTCGGCGCCGCTACAAATTACTGTCCCTGCGGCATCGGCCTCT
GCCCCTGCGTCAGCACTAGCTCCAGCCCCTGCGCCCCCCCCTGCTCCAGC
CCCTGGTGGCAACGGGGCCACGGGGCCACTGGCAAAGAAGCCGCGGGTGC
TCTCCGTTATGGAGCAGCGACGCGCCAACAGACTGGCTGCTGCTGGGAGT
GCGGGTGCCGCTGGAGATGAGGCGGAGAGCGGCTCGGGGCCAAGCATCAC
GCACAAGGTCCGTGTTCTCCAAGAGCTGGCGAGGTATGTAGCAGAAGGGG
TGGAGCTGGAAGAGGACGGATTTTCCTTGCCGGGGTTTTGGCGGCGAAGG
GGCTCCTCTAAGCTTTCCCAAGCGACAGGCGAGGTTATCGAGGAAGCTGC
TATGCCACATCTCGCACTCCTCGCACGCCTTTAC
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