mRNA_F-serratus_M_contig1183.1466.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1183.1466.1
Unique NamemRNA_F-serratus_M_contig1183.1466.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1183.1466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1183contigF-serratus_M_contig1183:267898..268140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.2244716-CDS-F-serratus_M_contig1183:267897..2680181622929086.2244716-CDS-F-serratus_M_contig1183:267897..268018Fucus serratus maleCDSF-serratus_M_contig1183 267898..268018 +
1690962698.78261-CDS-F-serratus_M_contig1183:267897..2680181690962698.78261-CDS-F-serratus_M_contig1183:267897..268018Fucus serratus maleCDSF-serratus_M_contig1183 267898..268018 +
1622929086.2425864-CDS-F-serratus_M_contig1183:268030..2681401622929086.2425864-CDS-F-serratus_M_contig1183:268030..268140Fucus serratus maleCDSF-serratus_M_contig1183 268031..268140 +
1690962698.7953112-CDS-F-serratus_M_contig1183:268030..2681401690962698.7953112-CDS-F-serratus_M_contig1183:268030..268140Fucus serratus maleCDSF-serratus_M_contig1183 268031..268140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1183.1466.1prot_F-serratus_M_contig1183.1466.1Fucus serratus malepolypeptideF-serratus_M_contig1183 267898..268140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1183.1466.1

>prot_F-serratus_M_contig1183.1466.1 ID=prot_F-serratus_M_contig1183.1466.1|Name=mRNA_F-serratus_M_contig1183.1466.1|organism=Fucus serratus male|type=polypeptide|length=77bp
WFAVDAPYASPCSVPGHSYCCTLFYTRYIFPAILARFIFIRMLLSEFVVQ
EQKKRTVTSKKHASRRANLLPSRLQP*
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mRNA from alignment at F-serratus_M_contig1183:267898..268140+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1183.1466.1 ID=mRNA_F-serratus_M_contig1183.1466.1|Name=mRNA_F-serratus_M_contig1183.1466.1|organism=Fucus serratus male|type=mRNA|length=243bp|location=Sequence derived from alignment at F-serratus_M_contig1183:267898..268140+ (Fucus serratus male)
TGGTTCGCTGTGGATGCACCTTACGCGAGTCCGTGCTCTGTACCCGGGCA
CTCCTACTGCTGCACACTATTTTATACCAGGTACATATTTCCAGCAATCC
TCGCGAGATTTATTTTTATTCGCGTGTTTAAAGGGATGCTTTTGTCTGAG
TTCGTCGTCCAGGAACAGAAAAAACGAACGGTAACCAGCAAAAAACACGC
CTCGAGGCGAGCAAACCTCCTACCGTCTAGACTACAGCCTTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1183:267898..268140+

>mRNA_F-serratus_M_contig1183.1466.1 ID=mRNA_F-serratus_M_contig1183.1466.1|Name=mRNA_F-serratus_M_contig1183.1466.1|organism=Fucus serratus male|type=CDS|length=462bp|location=Sequence derived from alignment at F-serratus_M_contig1183:267898..268140+ (Fucus serratus male)
TGGTTCGCTGTGGATGCACCTTACGCGAGTCCGTGCTCTGTACCCGGGCA
CTCCTACTGCTGCACACTATTTTATACCAGGTACATATTTCCAGCAATCC
TCGCGAGATTTATTTTTATTCTGGTTCGCTGTGGATGCACCTTACGCGAG
TCCGTGCTCTGTACCCGGGCACTCCTACTGCTGCACACTATTTTATACCA
GGTACATATTTCCAGCAATCCTCGCGAGATTTATTTTTATTCGGATGCTT
TTGTCTGAGTTCGTCGTCCAGGAACAGAAAAAACGAACGGTAACCAGCAA
AAAACACGCCTCGAGGCGAGCAAACCTCCTACCGTCTAGACTACAGCCTT
AAGGATGCTTTTGTCTGAGTTCGTCGTCCAGGAACAGAAAAAACGAACGG
TAACCAGCAAAAAACACGCCTCGAGGCGAGCAAACCTCCTACCGTCTAGA
CTACAGCCTTAA
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