mRNA_F-serratus_M_contig1183.1462.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1183.1462.1
Unique NamemRNA_F-serratus_M_contig1183.1462.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1183.1462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1183contigF-serratus_M_contig1183:169719..170393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size530
Cds size420
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1183.1462.1prot_F-serratus_M_contig1183.1462.1Fucus serratus malepolypeptideF-serratus_M_contig1183 169828..170393 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.1378992-UTR-F-serratus_M_contig1183:169718..1698271622929086.1378992-UTR-F-serratus_M_contig1183:169718..169827Fucus serratus maleUTRF-serratus_M_contig1183 169719..169827 -
1690962698.7532184-UTR-F-serratus_M_contig1183:169718..1698271690962698.7532184-UTR-F-serratus_M_contig1183:169718..169827Fucus serratus maleUTRF-serratus_M_contig1183 169719..169827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.154133-CDS-F-serratus_M_contig1183:169827..1701281622929086.154133-CDS-F-serratus_M_contig1183:169827..170128Fucus serratus maleCDSF-serratus_M_contig1183 169828..170128 -
1690962698.7617695-CDS-F-serratus_M_contig1183:169827..1701281690962698.7617695-CDS-F-serratus_M_contig1183:169827..170128Fucus serratus maleCDSF-serratus_M_contig1183 169828..170128 -
1622929086.175158-CDS-F-serratus_M_contig1183:170274..1703931622929086.175158-CDS-F-serratus_M_contig1183:170274..170393Fucus serratus maleCDSF-serratus_M_contig1183 170275..170393 -
1690962698.7727513-CDS-F-serratus_M_contig1183:170274..1703931690962698.7727513-CDS-F-serratus_M_contig1183:170274..170393Fucus serratus maleCDSF-serratus_M_contig1183 170275..170393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1183.1462.1

>prot_F-serratus_M_contig1183.1462.1 ID=prot_F-serratus_M_contig1183.1462.1|Name=mRNA_F-serratus_M_contig1183.1462.1|organism=Fucus serratus male|type=polypeptide|length=140bp
DFPAFTLEWNADVQQIEEGKAPFEPIYRKTQSHLESNWKTHNYNRNEGET
LSGVPNISRPLREPGVIEGPATTAAVVWPPPGPTPGQESGVAGLPTGPAP
AQQAQGGMYNAGHNGSHLSDEGAQEGRGESEKTARPPRL*
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mRNA from alignment at F-serratus_M_contig1183:169719..170393-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1183.1462.1 ID=mRNA_F-serratus_M_contig1183.1462.1|Name=mRNA_F-serratus_M_contig1183.1462.1|organism=Fucus serratus male|type=mRNA|length=675bp|location=Sequence derived from alignment at F-serratus_M_contig1183:169719..170393- (Fucus serratus male)
GACTTCCCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCAGATAGA
AGAGGGCAAGGCGCCTTTCGAACCTATTTACAGGAAGACGCAGTCGCATC
TCGAGTCGAACTGGAAAACGTGAGTGACCTAAGCACTTTCATTTGCTTTG
TCGCGTCCTGCTGGTCAACCTTTTGTGTCGCGCGTCCGGACGAAGTACGT
GTATTGTCAGCGGACACGTGTTTCACCTGTACTCCATTTCGGCGGCGCTG
ATATTTTTTTGCAAGGCACAACTACAACCGTAACGAGGGGGAGACGCTGA
GCGGAGTGCCGAACATATCTCGCCCGCTTCGTGAACCTGGAGTTATTGAG
GGCCCCGCTACTACAGCAGCGGTGGTGTGGCCGCCTCCGGGGCCCACCCC
AGGACAAGAATCAGGGGTCGCGGGGTTGCCTACGGGACCTGCCCCAGCCC
AGCAAGCACAAGGCGGGATGTACAATGCTGGACATAACGGTTCCCACCTC
AGCGACGAGGGCGCGCAAGAGGGGAGGGGGGAGAGTGAAAAGACGGCGCG
CCCCCCAAGACTCTGACTGCGACCACGTGCCATCGTTGCCTAGAGCTCGA
CATAGCCCTTCCTATATCGGGGCGGGGGGAGATGGAGTTGCAAACGGGGC
CAAATGTTCCTGCCCCGAGGATCTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1183:169719..170393-

>mRNA_F-serratus_M_contig1183.1462.1 ID=mRNA_F-serratus_M_contig1183.1462.1|Name=mRNA_F-serratus_M_contig1183.1462.1|organism=Fucus serratus male|type=CDS|length=840bp|location=Sequence derived from alignment at F-serratus_M_contig1183:169719..170393- (Fucus serratus male)
GACTTCCCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCAGATAGA
AGAGGGCAAGGCGCCTTTCGAACCTATTTACAGGAAGACGCAGTCGCATC
TCGAGTCGAACTGGAAAACGACTTCCCTGCCTTCACCCTTGAGTGGAACG
CCGACGTGCAGCAGATAGAAGAGGGCAAGGCGCCTTTCGAACCTATTTAC
AGGAAGACGCAGTCGCATCTCGAGTCGAACTGGAAAACGCACAACTACAA
CCGTAACGAGGGGGAGACGCTGAGCGGAGTGCCGAACATATCTCGCCCGC
TTCGTGAACCTGGAGTTATTGAGGGCCCCGCTACTACAGCAGCGGTGGTG
TGGCCGCCTCCGGGGCCCACCCCAGGACAAGAATCAGGGGTCGCGGGGTT
GCCTACGGGACCTGCCCCAGCCCAGCAAGCACAAGGCGGGATGTACAATG
CTGGACATAACGGTTCCCACCTCAGCGACGAGGGCGCGCAAGAGGGGAGG
GGGGAGAGTGAAAAGACGGCGCGCCCCCCAAGACTCTGAGCACAACTACA
ACCGTAACGAGGGGGAGACGCTGAGCGGAGTGCCGAACATATCTCGCCCG
CTTCGTGAACCTGGAGTTATTGAGGGCCCCGCTACTACAGCAGCGGTGGT
GTGGCCGCCTCCGGGGCCCACCCCAGGACAAGAATCAGGGGTCGCGGGGT
TGCCTACGGGACCTGCCCCAGCCCAGCAAGCACAAGGCGGGATGTACAAT
GCTGGACATAACGGTTCCCACCTCAGCGACGAGGGCGCGCAAGAGGGGAG
GGGGGAGAGTGAAAAGACGGCGCGCCCCCCAAGACTCTGA
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