mRNA_F-serratus_M_contig118.1438.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig118.1438.1
Unique NamemRNA_F-serratus_M_contig118.1438.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig118.1438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig118contigF-serratus_M_contig118:442371..442695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929079.1339765-UTR-F-serratus_M_contig118:442370..4423741622929079.1339765-UTR-F-serratus_M_contig118:442370..442374Fucus serratus maleUTRF-serratus_M_contig118 442371..442374 +
1690962695.9863467-UTR-F-serratus_M_contig118:442370..4423741690962695.9863467-UTR-F-serratus_M_contig118:442370..442374Fucus serratus maleUTRF-serratus_M_contig118 442371..442374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929079.1461797-CDS-F-serratus_M_contig118:442374..4426951622929079.1461797-CDS-F-serratus_M_contig118:442374..442695Fucus serratus maleCDSF-serratus_M_contig118 442375..442695 +
1690962695.9948616-CDS-F-serratus_M_contig118:442374..4426951690962695.9948616-CDS-F-serratus_M_contig118:442374..442695Fucus serratus maleCDSF-serratus_M_contig118 442375..442695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig118.1438.1prot_F-serratus_M_contig118.1438.1Fucus serratus malepolypeptideF-serratus_M_contig118 442375..442695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig118.1438.1

>prot_F-serratus_M_contig118.1438.1 ID=prot_F-serratus_M_contig118.1438.1|Name=mRNA_F-serratus_M_contig118.1438.1|organism=Fucus serratus male|type=polypeptide|length=107bp
MWCSFHKSTTHSDETCRTLQQQLGNNGSANCANQGSDYPAVLTASDPPPG
CNIEEQGISFAAVEVPNRAEPPKEESFWPFGPTDEAVASFDTSGFFSGFG
GATSDTG
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mRNA from alignment at F-serratus_M_contig118:442371..442695+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig118.1438.1 ID=mRNA_F-serratus_M_contig118.1438.1|Name=mRNA_F-serratus_M_contig118.1438.1|organism=Fucus serratus male|type=mRNA|length=325bp|location=Sequence derived from alignment at F-serratus_M_contig118:442371..442695+ (Fucus serratus male)
GCCGATGTGGTGCTCGTTCCACAAGTCCACCACGCACAGTGACGAGACAT
GCCGTACGCTACAACAGCAGCTGGGCAACAACGGTAGCGCAAACTGTGCC
AACCAGGGGTCGGACTACCCCGCCGTCCTGACTGCAAGCGATCCTCCTCC
CGGTTGTAATATTGAGGAGCAAGGCATATCGTTCGCTGCAGTAGAAGTGC
CGAACAGGGCCGAACCACCAAAAGAGGAGAGTTTCTGGCCGTTCGGTCCC
ACCGATGAAGCGGTTGCCTCGTTCGACACCAGCGGATTTTTCAGCGGCTT
TGGAGGTGCCACCAGCGACACTGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig118:442371..442695+

>mRNA_F-serratus_M_contig118.1438.1 ID=mRNA_F-serratus_M_contig118.1438.1|Name=mRNA_F-serratus_M_contig118.1438.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig118:442371..442695+ (Fucus serratus male)
ATGTGGTGCTCGTTCCACAAGTCCACCACGCACAGTGACGAGACATGCCG
TACGCTACAACAGCAGCTGGGCAACAACGGTAGCGCAAACTGTGCCAACC
AGGGGTCGGACTACCCCGCCGTCCTGACTGCAAGCGATCCTCCTCCCGGT
TGTAATATTGAGGAGCAAGGCATATCGTTCGCTGCAGTAGAAGTGCCGAA
CAGGGCCGAACCACCAAAAGAGGAGAGTTTCTGGCCGTTCGGTCCCACCG
ATGAAGCGGTTGCCTCGTTCGACACCAGCGGATTTTTCAGCGGCTTTGGA
GGTGCCACCAGCGACACTGGGATGTGGTGCTCGTTCCACAAGTCCACCAC
GCACAGTGACGAGACATGCCGTACGCTACAACAGCAGCTGGGCAACAACG
GTAGCGCAAACTGTGCCAACCAGGGGTCGGACTACCCCGCCGTCCTGACT
GCAAGCGATCCTCCTCCCGGTTGTAATATTGAGGAGCAAGGCATATCGTT
CGCTGCAGTAGAAGTGCCGAACAGGGCCGAACCACCAAAAGAGGAGAGTT
TCTGGCCGTTCGGTCCCACCGATGAAGCGGTTGCCTCGTTCGACACCAGC
GGATTTTTCAGCGGCTTTGGAGGTGCCACCAGCGACACTGGG
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