mRNA_F-serratus_M_contig1176.1421.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1176.1421.1
Unique NamemRNA_F-serratus_M_contig1176.1421.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1176.1421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1176contigF-serratus_M_contig1176:41248..41898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.2183592-CDS-F-serratus_M_contig1176:41247..413141622929077.2183592-CDS-F-serratus_M_contig1176:41247..41314Fucus serratus maleCDSF-serratus_M_contig1176 41248..41314 +
1690962695.1119661-CDS-F-serratus_M_contig1176:41247..413141690962695.1119661-CDS-F-serratus_M_contig1176:41247..41314Fucus serratus maleCDSF-serratus_M_contig1176 41248..41314 +
1622929077.2330673-CDS-F-serratus_M_contig1176:41758..418981622929077.2330673-CDS-F-serratus_M_contig1176:41758..41898Fucus serratus maleCDSF-serratus_M_contig1176 41759..41898 +
1690962695.1226838-CDS-F-serratus_M_contig1176:41758..418981690962695.1226838-CDS-F-serratus_M_contig1176:41758..41898Fucus serratus maleCDSF-serratus_M_contig1176 41759..41898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1176.1421.1prot_F-serratus_M_contig1176.1421.1Fucus serratus malepolypeptideF-serratus_M_contig1176 41248..41898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1176.1421.1

>prot_F-serratus_M_contig1176.1421.1 ID=prot_F-serratus_M_contig1176.1421.1|Name=mRNA_F-serratus_M_contig1176.1421.1|organism=Fucus serratus male|type=polypeptide|length=69bp
LLTKVSTQANVAELLSVSAYSTATAVAAEGSVIRAQDLGTFDVTIANILA
APLVRLRPTISCLSSHVQV
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mRNA from alignment at F-serratus_M_contig1176:41248..41898+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1176.1421.1 ID=mRNA_F-serratus_M_contig1176.1421.1|Name=mRNA_F-serratus_M_contig1176.1421.1|organism=Fucus serratus male|type=mRNA|length=651bp|location=Sequence derived from alignment at F-serratus_M_contig1176:41248..41898+ (Fucus serratus male)
CTGCTGACAAAGGTATCCACGCAAGCAAATGTAGCGGAGCTGCTGTCCGT
GAGCGCCTACAGCACAGGTGACAACTAGATCCACGCCCCGAAACGATTGA
ATACTTCAAGTGCTCTTTCTTAAGCTTTGCCCTTTTAGGTGTTCAACAAC
ACATTTGAACGGTCACGGGGGATGCTCGAATAGTCGTAAGCATTTCCGTC
GCAATTTCTGCTTTCAACCGTTTGCTTAAGAAAGTTTATTTTGGGAACGG
TGCCGGCCGGGGATGACTTACTTATGCATGGGAAAGCATTCGATTTCGTC
TTTCACCTTGGGAGGCATTCGTTTTTTCATGGGGATCAGGGGATGTTCAG
TTGATTCGACATGTACGTATTCGGTGCACCCTCTCGTTAAAATTATGTGC
TTTACTCCCCCCCCAAGTACACTGTTGAGAATATAAAATCTGTGATCGCT
GTCGAATTCGAAAGCAAGCGGTCTTTTACGTGCGCCTTTGGCTTGTGGCT
TTTCACCGCAGCAACTGCGGTGGCGGCGGAAGGGTCAGTAATTAGGGCGC
AAGATCTGGGCACCTTTGACGTAACTATCGCCAACATCCTCGCCGCACCG
CTCGTGAGGTTACGGCCTACCATATCTTGTCTCTCTTCACACGTCCAGGT
G
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Coding sequence (CDS) from alignment at F-serratus_M_contig1176:41248..41898+

>mRNA_F-serratus_M_contig1176.1421.1 ID=mRNA_F-serratus_M_contig1176.1421.1|Name=mRNA_F-serratus_M_contig1176.1421.1|organism=Fucus serratus male|type=CDS|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig1176:41248..41898+ (Fucus serratus male)
CTGCTGACAAAGGTATCCACGCAAGCAAATGTAGCGGAGCTGCTGTCCGT
GAGCGCCTACAGCACAGCTGCTGACAAAGGTATCCACGCAAGCAAATGTA
GCGGAGCTGCTGTCCGTGAGCGCCTACAGCACAGCAACTGCGGTGGCGGC
GGAAGGGTCAGTAATTAGGGCGCAAGATCTGGGCACCTTTGACGTAACTA
TCGCCAACATCCTCGCCGCACCGCTCGTGAGGTTACGGCCTACCATATCT
TGTCTCTCTTCACACGTCCAGGTGCAACTGCGGTGGCGGCGGAAGGGTCA
GTAATTAGGGCGCAAGATCTGGGCACCTTTGACGTAACTATCGCCAACAT
CCTCGCCGCACCGCTCGTGAGGTTACGGCCTACCATATCTTGTCTCTCTT
CACACGTCCAGGTG
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