mRNA_F-serratus_M_contig1172.1415.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1172.1415.1
Unique NamemRNA_F-serratus_M_contig1172.1415.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1172.1415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1172contigF-serratus_M_contig1172:157389..157878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size167
Cds size111
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1172.1415.1prot_F-serratus_M_contig1172.1415.1Fucus serratus malepolypeptideF-serratus_M_contig1172 157418..157851 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.708937-UTR-F-serratus_M_contig1172:157388..1574171622929076.708937-UTR-F-serratus_M_contig1172:157388..157417Fucus serratus maleUTRF-serratus_M_contig1172 157389..157417 -
1690962694.87244-UTR-F-serratus_M_contig1172:157388..1574171690962694.87244-UTR-F-serratus_M_contig1172:157388..157417Fucus serratus maleUTRF-serratus_M_contig1172 157389..157417 -
1622929076.7515368-UTR-F-serratus_M_contig1172:157851..1578781622929076.7515368-UTR-F-serratus_M_contig1172:157851..157878Fucus serratus maleUTRF-serratus_M_contig1172 157852..157878 -
1690962694.911741-UTR-F-serratus_M_contig1172:157851..1578781690962694.911741-UTR-F-serratus_M_contig1172:157851..157878Fucus serratus maleUTRF-serratus_M_contig1172 157852..157878 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.7263684-CDS-F-serratus_M_contig1172:157417..1574711622929076.7263684-CDS-F-serratus_M_contig1172:157417..157471Fucus serratus maleCDSF-serratus_M_contig1172 157418..157471 -
1690962694.8831553-CDS-F-serratus_M_contig1172:157417..1574711690962694.8831553-CDS-F-serratus_M_contig1172:157417..157471Fucus serratus maleCDSF-serratus_M_contig1172 157418..157471 -
1622929076.7387366-CDS-F-serratus_M_contig1172:157794..1578511622929076.7387366-CDS-F-serratus_M_contig1172:157794..157851Fucus serratus maleCDSF-serratus_M_contig1172 157795..157851 -
1690962694.8940039-CDS-F-serratus_M_contig1172:157794..1578511690962694.8940039-CDS-F-serratus_M_contig1172:157794..157851Fucus serratus maleCDSF-serratus_M_contig1172 157795..157851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1172.1415.1

>prot_F-serratus_M_contig1172.1415.1 ID=prot_F-serratus_M_contig1172.1415.1|Name=mRNA_F-serratus_M_contig1172.1415.1|organism=Fucus serratus male|type=polypeptide|length=37bp
MAGVFEGMDPLTFKGDVSATIISKIESRPIRIVQPA*
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mRNA from alignment at F-serratus_M_contig1172:157389..157878-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1172.1415.1 ID=mRNA_F-serratus_M_contig1172.1415.1|Name=mRNA_F-serratus_M_contig1172.1415.1|organism=Fucus serratus male|type=mRNA|length=490bp|location=Sequence derived from alignment at F-serratus_M_contig1172:157389..157878- (Fucus serratus male)
CACAGCCCGCGATACTCTGGTTTGAAGATGGCTGGCGTGTTCGAGGGCAT
GGACCCATTGACTTTCAAGGGTGATGTCTCCGCGGTGGGAAATGCCCCTC
CGTTCAAACGAAAAGCGATCGACAAAAGAATGGATCCGGCTTATAAGGCT
TCGCTACAACGCGATGCACTTCGAGAGTTAACGCTATCTTCCCGTGCGCT
GCGTCGCATTCCAAAAATTTAACCAAATAGAATTATTTACTTACAAGTTC
AAAATTTGTCAAAATCAATTCTATTGACACCATCTATAATGGTGTGTACG
TCGAATAAGGTACCCATGTACAGCTACTTTAAAACACTTGGGGGTTAAGT
CCTCCCGACGGAATATTGAGCGCGTGCAATTTATCTGCCCGGCTGATTTC
CCTCCAGACAATAATTTCCAAGATCGAATCGAGGCCGATACGGATTGTTC
AGCCTGCCTAACGGGCGCGAGCGGGTCGTCCTACTTCAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1172:157389..157878-

>mRNA_F-serratus_M_contig1172.1415.1 ID=mRNA_F-serratus_M_contig1172.1415.1|Name=mRNA_F-serratus_M_contig1172.1415.1|organism=Fucus serratus male|type=CDS|length=222bp|location=Sequence derived from alignment at F-serratus_M_contig1172:157389..157878- (Fucus serratus male)
ATGGCTGGCGTGTTCGAGGGCATGGACCCATTGACTTTCAAGGGTGATGT
CTCCGCGATGGCTGGCGTGTTCGAGGGCATGGACCCATTGACTTTCAAGG
GTGATGTCTCCGCGACAATAATTTCCAAGATCGAATCGAGGCCGATACGG
ATTGTTCAGCCTGCCTAAACAATAATTTCCAAGATCGAATCGAGGCCGAT
ACGGATTGTTCAGCCTGCCTAA
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