mRNA_F-serratus_M_contig1172.1414.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1172.1414.1
Unique NamemRNA_F-serratus_M_contig1172.1414.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1172.1414.1 vs. uniprot
Match: A0A6H5L0F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F0_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.000e-12
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = -3 
Query:   59 GFRSPFAIEHPRHSWSSPLWAISCCVVVFLSNPLWAWPNVQWRMLMSVG 205
            G  SPFA+EHPRHS SSP   + CC  V LS+  W WP  QW+ LMS G
Sbjct:    2 GLESPFAVEHPRHSRSSPTSVVPCCFAVVLSSTSWEWPCAQWKSLMSTG 50
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BLAST of mRNA_F-serratus_M_contig1172.1414.1 vs. uniprot
Match: A0A6H5JJP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP4_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.380e-9
Identity = 27/49 (55.10%), Postives = 31/49 (63.27%), Query Frame = -3 
Query:   59 GFRSPFAIEHPRHSWSSPLWAISCCVVVFLSNPLWAWPNVQWRMLMSVG 205
            G  SPFA+EHPR S SSP   + CC  V LS+  W WP  QW+ LMS G
Sbjct:    2 GLGSPFAVEHPRQSRSSPTRVVPCCFAVVLSSTSWEWPCAQWKSLMSTG 50
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BLAST of mRNA_F-serratus_M_contig1172.1414.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.710e-8
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 3 
Query:   66 DINILHCTFGHAHKGLLKKTTTQQEIAHSGELHECRGCSMAKGLRKPVARSTHTR 230
            D+N  H  + H+HKGLL+ T  +      GE+HEC GCSMAK ++K +AR T +R
Sbjct:  665 DVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSR 719
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BLAST of mRNA_F-serratus_M_contig1172.1414.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.720e-8
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 3 
Query:   66 DINILHCTFGHAHKGLLKKTTTQQEIAHSGELHECRGCSMAKGLRKPVARSTHTR 230
            D+N  H  + H+HKGLL+ T  +      GE+HEC GCSMAK ++K +AR T +R
Sbjct:  372 DVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSR 426
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BLAST of mRNA_F-serratus_M_contig1172.1414.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.110e-5
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 3 
Query:   66 DINILHCTFGHAHKGLLKKTTTQQEIAHSGELHECRGCSMAKGLRKPVARSTHTRA 233
            DIN +H   GH+H+ LL+    QQ     GEL EC GC  AKGL KP+ + T TRA
Sbjct:  943 DINDVHVAHGHSHELLLRTMAKQQGTMLLGELPECLGCLTAKGLSKPIPK-TSTRA 997
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1172.1414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L0F0_9PHAE1.000e-1257.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJP4_9PHAE2.380e-955.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBA7_9PHAE1.710e-847.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.720e-847.27Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K583_9PHAE1.110e-550.00Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1172contigF-serratus_M_contig1172:92569..92982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size415
Cds size414
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.024349-CDS-F-serratus_M_contig1172:92568..929821622929077.024349-CDS-F-serratus_M_contig1172:92568..92982Fucus serratus maleCDSF-serratus_M_contig1172 92569..92982 +
1690962695.0458217-CDS-F-serratus_M_contig1172:92568..929821690962695.0458217-CDS-F-serratus_M_contig1172:92568..92982Fucus serratus maleCDSF-serratus_M_contig1172 92569..92982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1172.1414.1prot_F-serratus_M_contig1172.1414.1Fucus serratus malepolypeptideF-serratus_M_contig1172 92569..92982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1172.1414.1

>prot_F-serratus_M_contig1172.1414.1 ID=prot_F-serratus_M_contig1172.1414.1|Name=mRNA_F-serratus_M_contig1172.1414.1|organism=Fucus serratus male|type=polypeptide|length=138bp
MVDTACAVIAPGKAKAPNPPPLTSTSSTARSATPTRDCSRKRRRSKRSPT
AGNSTSAEDVRWRRGCGSPSRGRRTPEQVPLSRPAPPQQLPPIAEEGGST
AGKGVSEERAPSQGGGGVKEVLDNESDLDDTGVGPMLT
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mRNA from alignment at F-serratus_M_contig1172:92569..92982+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1172.1414.1 ID=mRNA_F-serratus_M_contig1172.1414.1|Name=mRNA_F-serratus_M_contig1172.1414.1|organism=Fucus serratus male|type=mRNA|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig1172:92569..92982+ (Fucus serratus male)
ATGGTAGACACTGCTTGTGCCGTAATCGCGCCGGGGAAAGCGAAAGCTCC
CAACCCCCCCCCACTGACATCAACATCCTCCACTGCACGTTCGGCCACGC
CCACAAGGGATTGCTCAAGAAAACGACGACGCAGCAAGAGATCGCCCACA
GCGGGGAACTCCACGAGTGCCGAGGATGTTCGATGGCGAAGGGGCTGCGG
AAGCCCGTCGCGAGGTCGACGCACACCAGAGCAGGTACCCCTTTCCCGCC
CCGCGCCCCCGCAGCAACTGCCCCCTATTGCCGAAGAGGGGGGGTCTACA
GCGGGGAAGGGCGTGAGCGAGGAGAGAGCGCCGAGTCAAGGCGGAGGGGG
GGTCAAAGAGGTTTTGGACAACGAGTCCGACCTTGACGACACGGGGGTTG
GGCCGATGCTAACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1172:92569..92982+

>mRNA_F-serratus_M_contig1172.1414.1 ID=mRNA_F-serratus_M_contig1172.1414.1|Name=mRNA_F-serratus_M_contig1172.1414.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig1172:92569..92982+ (Fucus serratus male)
ATGGTAGACACTGCTTGTGCCGTAATCGCGCCGGGGAAAGCGAAAGCTCC
CAACCCCCCCCCACTGACATCAACATCCTCCACTGCACGTTCGGCCACGC
CCACAAGGGATTGCTCAAGAAAACGACGACGCAGCAAGAGATCGCCCACA
GCGGGGAACTCCACGAGTGCCGAGGATGTTCGATGGCGAAGGGGCTGCGG
AAGCCCGTCGCGAGGTCGACGCACACCAGAGCAGGTACCCCTTTCCCGCC
CCGCGCCCCCGCAGCAACTGCCCCCTATTGCCGAAGAGGGGGGGTCTACA
GCGGGGAAGGGCGTGAGCGAGGAGAGAGCGCCGAGTCAAGGCGGAGGGGG
GGTCAAAGAGGTTTTGGACAACGAGTCCGACCTTGACGACACGGGGGTTG
GGCCGATGCTAACCATGGTAGACACTGCTTGTGCCGTAATCGCGCCGGGG
AAAGCGAAAGCTCCCAACCCCCCCCCACTGACATCAACATCCTCCACTGC
ACGTTCGGCCACGCCCACAAGGGATTGCTCAAGAAAACGACGACGCAGCA
AGAGATCGCCCACAGCGGGGAACTCCACGAGTGCCGAGGATGTTCGATGG
CGAAGGGGCTGCGGAAGCCCGTCGCGAGGTCGACGCACACCAGAGCAGGT
ACCCCTTTCCCGCCCCGCGCCCCCGCAGCAACTGCCCCCTATTGCCGAAG
AGGGGGGGTCTACAGCGGGGAAGGGCGTGAGCGAGGAGAGAGCGCCGAGT
CAAGGCGGAGGGGGGGTCAAAGAGGTTTTGGACAACGAGTCCGACCTTGA
CGACACGGGGGTTGGGCCGATGCTAACC
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