mRNA_F-serratus_M_contig117.1401.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig117.1401.1
Unique NamemRNA_F-serratus_M_contig117.1401.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig117.1401.1 vs. uniprot
Match: D7G199_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G199_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 1.110e-62
Identity = 148/384 (38.54%), Postives = 193/384 (50.26%), Query Frame = 3 
Query:   81 VAVLS-YGVSVGVAFTPPSMIPISNASAGSSCLRGCSTRGPVPCWIQRPHKGTRARNVNSRRLLLSRDQDGPIMVVESK--KSGRDALAVTKSRS------QTRVSQRVEQDQVL------GKMEKRDDVRVRTGRGSDMMQVARLCVDTFRGPFEWWMLPLRVYRELAFYQQVGQRCGGILRNEIQHSIVVVEDATSHEIVGFLEVGLLPRPRSSEEIAMQ-----KARKNELATDGGDVLENDGDGSSGVG------------------------------------TISFEKSPDVAYLANVVVDRNQRRRGIGRLMINSAIEIVKELWPLEKRIYVTVEKGNDVAITMYEALGFELTALEDEMLARSRKRPARIYFSKPL 1064
            +AVL  YG+ VG+AF PP   P+  A  GS      +T   V C +  P  G               D DGPI+   SK  K+      V+   S      +  VSQRVEQD+VL      G + +   + VRT    DM  ++RLC+D FRGPF+W+ LP+++++E AF+ Q+  R G + RNEI+HS+V+ +D TS  +VGFLE+G+LP+P SSEE A+       AR                                                            I  EK PDVAYLANVVVDR QRRRGIGR M+NSAIEI                 GND+A+ +Y+ +GFEL ALEDEM+ARSR+RP R+Y SKPL
Sbjct:    6 IAVLCWYGLPVGLAFAPP---PLVRARVGSR-----NTASAVACHLFSPDHG---------------DHDGPIVRAPSKAAKAAAQGKEVSGKPSGGWGSWEKVVSQRVEQDEVLDRFTSAGGVPEAAKLAVRTANSGDMPSISRLCIDIFRGPFQWFELPIQLFQEFAFFGQIKGRLGRVTRNEIKHSMVIAQDTTSRRVVGFLEIGMLPKPSSSEESALAGESLTAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAIKREKQPDVAYLANVVVDRGQRRRGIGRTMVNSAIEI-----------------GNDIALALYQGMGFELAALEDEMMARSRRRPPRVYLSKPL 349
[Close]
BLAST of mRNA_F-serratus_M_contig117.1401.1 vs. uniprot
Match: A0A836CF34_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF34_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.750e-16
Identity = 63/195 (32.31%), Postives = 96/195 (49.23%), Query Frame = 3 
Query:  441 RGSDMMQVARLCVDTFRGPFEWWMLPLRVYRELAFYQQVGQRCGGILRNEIQHSIVVVEDATSHEIVGFLEVGLLPRPRSSEEI----------AMQKARKNELAT----DGGDVLENDGDGSSGVGTISFEK--SPDVAYLANVVVDRNQRRRGIGRLMINSAIEIVKELWPL-EKRIYVTVEKGNDVAITMYE 974
            +  D+   +RLC+ TFRGP  WW     + +EL+   ++ QR  GI  N ++H +VV       +IVGF+EVG+LP P    E+           +Q  R+    T    +G  +        +   T    +   PDV YLAN+VV  + R RG+G  ++  A  +V   WP  + R++V VE  N+ AI +YE
Sbjct:    4 QADDLAAASRLCIQTFRGPVPWWQGLQGLRQELSLTYRLQQRLKGIDANTMEHKMVVAVGGDG-QIVGFMEVGMLPPPVGFYEMDVSAQDWNGATVQVQRRVPSPTRPVQNGYRLTRARAALMASAATDEGYRVRPPDVPYLANLVVATDYRGRGVGSKLVKLAQLLVARKWPSRQSRLFVLVEASNEAAIRLYE 197
[Close]
BLAST of mRNA_F-serratus_M_contig117.1401.1 vs. uniprot
Match: A0A7S3SZK1_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SZK1_9SPIT)

HSP 1 Score: 61.2 bits (147), Expect = 4.450e-7
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 3 
Query:  756 GDGSSGVGTISFEKSPDVAYLANVVVDRNQRRRGIGRLMINSAIEIVKELWPLEKRIYVTVEKGNDVAITMYEALGFELTA 998
            GDGSS     S EK    AY++N+ VD + RRRGIGRL++ ++ E V+   P  + I++ V   ND A+  Y++LG+E+ A
Sbjct:  128 GDGSSLDVCASIEKR---AYVSNLAVDIDMRRRGIGRLLMKASEEEVRAWVPSNRNIWLEVSLDNDSALRFYKSLGYEMVA 205
[Close]
BLAST of mRNA_F-serratus_M_contig117.1401.1 vs. uniprot
Match: A0A7S0L726_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L726_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 1.520e-5
Identity = 57/204 (27.94%), Postives = 90/204 (44.12%), Query Frame = 3 
Query:  426 RVRTGRGSDMMQVARLCVDTF-------RGPFEW---WMLPLRVYRELA----FYQQVGQRCGGILRNEIQHSIVVVEDATSHEIV-GFLEVGLLPRPRSSEEIAMQKARKNELATDGGDVLENDGDGSSGVGTISFEKSPDV-AYLANVVVDRNQRRRGIGRLMINSAIEIVKELWPLEKRIYVTVEKGNDVAITMYEALGFE 989
            RV  G  +   Q+A L VD F        GP  W    +L   V  EL     +Y++  ++C       + H   V+   T+  ++ GFL++G   RP+ S              T  G  L +   G S     S E   ++ AY++N+ V    RRRGIGRL++      V++  P +  I++ V   N  A++ Y +LG+E
Sbjct:   15 RVAPGDAAVTAQLAALLVDAFYGRHRALNGPIAWVQRQVLEADVCNELGSRLRYYERAREQC-------LPHIGAVLAATTADGVLCGFLDIG---RPKYS--------------TAKGFRLPSHPSGGSTTVEESGEHEQELRAYVSNLAVGSESRRRGIGRLLMQECELEVRQWLPAQDYIWLEVSDSNSAAVSFYGSLGYE 194
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig117.1401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G199_ECTSI1.110e-6238.54N-acetyltransferase domain-containing protein n=2 ... [more]
A0A836CF34_9STRA2.750e-1632.31N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S3SZK1_9SPIT4.450e-741.98Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7S0L726_9EUKA1.520e-527.94Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig117contigF-serratus_M_contig117:668386..674281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.1
Seed ortholog evalue2.3e-06
Seed eggNOG ortholog554065.XP_005847348.1
KEGG koko:K20793
Hectar predicted targeting categorychloroplast
EggNOG free text desc.FR47-like protein
EggNOG OGs28J24@1,2QREC@2759,37HYN@33090
Ec32 ortholog descriptionSecreted acetyltransferase (GNAT) domain protein
Ec32 orthologEc-12_005280.1
EC2.3.1.258
COG Functional cat.S
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons3
Model size1242
Cds size1005
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig117.1401.1prot_F-serratus_M_contig117.1401.1Fucus serratus malepolypeptideF-serratus_M_contig117 668558..674216 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.9661639-UTR-F-serratus_M_contig117:668385..6685571622929074.9661639-UTR-F-serratus_M_contig117:668385..668557Fucus serratus maleUTRF-serratus_M_contig117 668386..668557 -
1690962693.9847715-UTR-F-serratus_M_contig117:668385..6685571690962693.9847715-UTR-F-serratus_M_contig117:668385..668557Fucus serratus maleUTRF-serratus_M_contig117 668386..668557 -
1622929075.0163293-UTR-F-serratus_M_contig117:674216..6742811622929075.0163293-UTR-F-serratus_M_contig117:674216..674281Fucus serratus maleUTRF-serratus_M_contig117 674217..674281 -
1690962694.0222945-UTR-F-serratus_M_contig117:674216..6742811690962694.0222945-UTR-F-serratus_M_contig117:674216..674281Fucus serratus maleUTRF-serratus_M_contig117 674217..674281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.9784555-CDS-F-serratus_M_contig117:668557..6686831622929074.9784555-CDS-F-serratus_M_contig117:668557..668683Fucus serratus maleCDSF-serratus_M_contig117 668558..668683 -
1690962693.998911-CDS-F-serratus_M_contig117:668557..6686831690962693.998911-CDS-F-serratus_M_contig117:668557..668683Fucus serratus maleCDSF-serratus_M_contig117 668558..668683 -
1622929074.995345-CDS-F-serratus_M_contig117:672842..6732531622929074.995345-CDS-F-serratus_M_contig117:672842..673253Fucus serratus maleCDSF-serratus_M_contig117 672843..673253 -
1690962694.0068135-CDS-F-serratus_M_contig117:672842..6732531690962694.0068135-CDS-F-serratus_M_contig117:672842..673253Fucus serratus maleCDSF-serratus_M_contig117 672843..673253 -
1622929075.0059705-CDS-F-serratus_M_contig117:673748..6742161622929075.0059705-CDS-F-serratus_M_contig117:673748..674216Fucus serratus maleCDSF-serratus_M_contig117 673749..674216 -
1690962694.0145423-CDS-F-serratus_M_contig117:673748..6742161690962694.0145423-CDS-F-serratus_M_contig117:673748..674216Fucus serratus maleCDSF-serratus_M_contig117 673749..674216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig117.1401.1

>prot_F-serratus_M_contig117.1401.1 ID=prot_F-serratus_M_contig117.1401.1|Name=mRNA_F-serratus_M_contig117.1401.1|organism=Fucus serratus male|type=polypeptide|length=335bp
MQILSVAVLSYGVSVGVAFTPPSMIPISNASAGSSCLRGCSTRGPVPCWI
QRPHKGTRARNVNSRRLLLSRDQDGPIMVVESKKSGRDALAVTKSRSQTR
VSQRVEQDQVLGKMEKRDDVRVRTGRGSDMMQVARLCVDTFRGPFEWWML
PLRVYRELAFYQQVGQRCGGILRNEIQHSIVVVEDATSHEIVGFLEVGLL
PRPRSSEEIAMQKARKNELATDGGDVLENDGDGSSGVGTISFEKSPDVAY
LANVVVDRNQRRRGIGRLMINSAIEIVKELWPLEKRIYVTVEKGNDVAIT
MYEALGFELTALEDEMLARSRKRPARIYFSKPLV*
back to top

mRNA from alignment at F-serratus_M_contig117:668386..674281-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig117.1401.1 ID=mRNA_F-serratus_M_contig117.1401.1|Name=mRNA_F-serratus_M_contig117.1401.1|organism=Fucus serratus male|type=mRNA|length=5896bp|location=Sequence derived from alignment at F-serratus_M_contig117:668386..674281- (Fucus serratus male)
TGCTAATAGACGCACGGTGTGGGTTCAGATATCATCTGCCTCTCGTTTGG
TGCAGGTGATATACGATGCAAATCCTGTCGGTGGCTGTACTATCGTACGG
GGTCTCGGTTGGGGTGGCTTTTACACCACCGAGTATGATACCCATCAGCA
ATGCCAGTGCCGGTAGCAGTTGCTTGCGTGGATGCTCAACGAGGGGACCG
GTACCCTGTTGGATTCAACGGCCTCATAAAGGTACACGTGCGCGGAACGT
GAACTCGCGGAGACTCCTCTTAAGCCGTGATCAAGATGGACCCATTATGG
TGGTTGAATCGAAGAAATCTGGACGTGATGCTCTTGCTGTCACGAAATCA
AGATCACAAACGAGAGTTTCTCAGCGTGTGGAACAAGATCAAGTCCTTGG
AAAAATGGAGAAGCGGGACGACGTGAGAGTACGCACGGGGCGAGGTAGTG
ACATGATGCAGGTGGCACGCCTCTGCGTCGACACTTTCCGGGGGCCATTC
GAGTGGTGGATGCTACCCCTTCGAGTTTATCGGGTGGGTCTGGCGAGTTT
TGTATCAGGGGAAGCTCCAGTTACTTTCGTTCTGGTCCGCCTGAGCTCTA
CAACTGCGGTCGATCTTTCTATCAGTACAGTCACGTTTATCGGCCCACGT
TTATCGGTGAACGCGTTCCTTGTTGTACGGTTAGCTCTACTGTACGTAAA
CAACGGCGGACGAGCGGACGTACTTGTAAGTAGCCAGTACTGGAGTACAA
AGTAGATGGTAGTTTCATCAGAGGACTTCGTTTCGAGAACTTAGTAAGAT
ATTGGTTACTACAGCTGTAGCTCACCTAGGGGAAGACAGACAGAGATCGG
CCAAGCTGGGTGTGCAATCTGAGAGCTGGACTCATCCAAACGACTTGATA
CCTAGAGCTATAGTCTATCTGTACAGCTACAATAGACATTACGATTCGTC
AGATATTGTATGCCGCTATCTAATTCCGTATGCCGCCCTACATCCCTATC
GGAACAATAACTGAATCCATGGGCACAGGAACTTGCTTTCTACCAGCAGG
TGGGGCAAAGGTGCGGGGGTATCTTGCGGAATGAGATACAGCACAGTATT
GTCGTAGTCGAAGACGCTACGTCCCACGAGATCGTAGGCTTTCTAGAGGT
CGGTTTGCTGCCGAGACCGAGATCTTCAGAGGAAATTGCGATGCAAAAGG
CGAGGAAGAACGAGCTTGCAACGGACGGTGGAGATGTTTTGGAGAACGAC
GGAGATGGCAGCAGCGGTGTCGGTACCATTTCGTTCGAGAAGTCGCCTGA
TGTGGCGTACCTGGCAAACGTCGTGGTGGATCGAAATCAGAGAAGGAGGG
GAATTGGTCGCCTCATGATCAACTCGGCGATTGAGATTGTCAAAGAGCTT
TGGCCACTTGAGAAGCGCATCTACGTTACCGTCGAGAAGGTGAGGTTTGA
AGACGATGTGTATACTGCTCTTTTTGCTGTTATGTTTTTTTTCACTCTCT
AACGCGATTTTGACAAGCGCAAACAAGTACACTCCCCTCGTTCGTACTCT
ACATGCAACCAAAACTACCTGTTGTTTTTAAATGAAAATCTGAATGCACC
TAGACCTTCTGATCCGCCCCCGGTAGGGGGGAAAAATCAAAACGTTTAGG
TGGTATCAAAGGCTGCAAATCAAAACCTCTTCATGGCATTTAAGTTAAAC
GGGTTCCCCAATGCAGATAACATTGGCTCAACAGTATAATGTCGGGGAGA
AACCCACCGTTATACTGTACCAGTACTCTGATGTTAATCGCCATGCAGGG
ACACTAGAAAAACAGCAGAGACAAAACAGTACATCGTCAAACAGTAAAAA
GACGAATCCAATACAACATTGAAACGGGGACAGAGGGCCATGGTGATGCG
GAATCTTTATATCCAAGCACACGACACCATTCACCTGGAATTAGCCGAAG
AGCAGTGGGAGATCACACAATGGAAGTAAGAGGCGAGCGGAAAGAACTGG
GTTCCTCGCTCAATACTAGTCAGGGCTACGATACACAGATACTCCTCATA
CATGGACTCAGCGATGGTCCCGCGGTGACCAGAAACAACGAGGAAGAAGC
ATCTGTCTATCAAAATAACTGAGTGCGCCTCACAACAACCGAGTGTAATC
ATCCCATCGGAGGTCCAATGTCTTCACCACGTCAGTCATTGTTCCGATCT
GTCGTCATCATCAGCTAGCTCCATTGCTGACTTGTTTGTTGCGGCCGATG
GGCCTCAACGTGCTATAGGCTACCGATCCCACCTACTGCAACGTTGCCAT
CCTGCCTGTGGTAACTAAGGGCATTCACATCTCTCCCTGGCCCTCGCCTA
CGATTTTTTGTCGCGATGCAGATTCAGCACTCTTACGCCTCGTCAACCAG
TGGTCCAATTTTATTTAGTCACGTTCTCACGCTTTCTGCTGCGAAAACCA
TAATAAGGAATTCATCCCCTCAAGAATCGAACTCTCGCACCCATTCCAAA
ATAATTATAGTGAAATTGCTACCTTATCCATTACATGCTCTGCTCGGGCG
ACGAGCAGTTGGTTAAAAAACAATCTAAACGCATCTAGACCTTACCTTAC
CTTACCTTACCTCTATGATATGTGGTTCTGGGCATCCACTCAATCAGGGG
GCGAGAAAGTGTCAAAACGTTCAGGTGGGAACGTAGGTTGTAAGGACAAA
AACTCTTGATGGGATACAATTGGGTTTCTCCTGTCGCCGTTACTTTCAAC
ATGCCCACTTCATACCAATAGTGGGTGTGAGAAAGAGAGGCGTATATTAA
TTGGTCCATGGTGACCTGGTAAGGCAGCACTCGTTCGGAACTACCTTGAG
GTTTACTGACCCTGTGCCGACGGACTCTCGGCGGTGCACGCCATCGGTAC
GCAATTGCGTGACCCGATAAACTCGGGACTTACCCGATGGCGTATAACGG
TTTAATATAAGTATATGGACGCCGCCGCGGAACTCGAGAGGAATCCCGTA
AGCACCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGG
GACCGCCGAAACCGTCTCGCGAGACCAAATTCTCAGGCATAAACGCGGAC
AGGGGAATATTGGCAACCTTACCAAGTTGATCAACACTCATGGTATATGT
GTGACCATACATGGTGGTACCATCGGATCAACAGTATAATATCGGGAAGA
AACCCGCCGTTGTACTTAAAACACTTGCATAATCTATGCCTGCAGGTACA
CCGAAACAGAAGCAAAAATTCACGCTGAACAAAAATGAAACTCAGTTGTA
ATGTTGTGTTCGATGTCGGGTAAAGTTGATCGTAGGATGTACTATTAATA
TTTATAATAGTACAGGTCCGACAATGAAATGTCGGGGAAAGAGTGTCATT
GTGAAGGTGGGCACATAGTCTGTAAAGATAAGATATCTTCATGGATCCTA
GTTGGGTTCCACAGCGGCATAATATCGAGATAAACCTCCCTTTATACGAT
GTATGGTCATCGCTTATAACAGAGTATAAATCAACCGAGTAAGGTTGCCA
ATCCTGCTCGAGGTCAGCTGGACAGGGAGAATGAATATTGCCCAGGCGTC
ATTCGCGCCGGAGAATTTGGTCTCGCGAGACGGTTCGGCCGTCCCGTCCC
GCGTCAGTCTGCTTATTCTTTACACTCGGGCTGAATTTGGTGCTTTTACT
CACGGAATTTTCCCGATTTCCGCGGCGGCGTCCATTTATAAATACCGTCA
AGCGCCATCGGGTCAGCCCCGAGTTTATCGGGTCACGCAACTGCGTATCG
ATGGTGTTACTGCAGAGTCCGTCGGCACAGGGCCAGTAGTCCTCAAGGTA
GTTCCAGTAACGGATGCTGCCTTTGCAGTTATCACCATGGACTATGACCA
ATTAATGGGCGCCTCTCTTTTCCCACACCCACCATACCTATAGTAATATT
GGTATGAAGTGGGCAGGTTGAAAGTATGTACACGTACCTATACGTCTTTG
ACTTACATCAAACTAGGGGCACCAGTACGTGCTGAAAGAGGATACCTGGT
ACAACTCAGTAGAGTTACCTGGCACTAAAGAAAAATATGAACCCATCAAA
CGTTTAGGTGGGAACATGGACTGGAGGGACAAAAACTATTGAGGGGACTA
CTGTATTATTTTAGTACATATACGAATAATGAGGCCACCAAGACAGGTTA
ACGAAAACCCCGCAGAAAAAAGGGAAAGAAACCTTGGAATCTGTTACGAT
TTAAATTACGGTATGGCTATTTGCCCCACCGGTGGCCTATTCTCTTGTTT
ACCCCCCCCCACCTGGTTCTCGCGTCAGAAGACTTGGGTGGTCACAGTAC
ATGCATGGGTATGTTAGAGTTAGGGTTAGCTATCATGGGGTCTATCGTGC
AGCTCAAACGGCCCTGTCTACGTGCTGTTACGGCCGGTGGGGTGGTTGGT
GTTTTCTGGTATGTTTGGCTGCCTTCACATACCAGAAAACACCGACCACC
CCACCGGCCGTAACAGCACGTAGACAAGGGCCCTTTGGGCTGCACGATAG
GCCCCATGATAGCCCTGCGACGCGCCAACACACTCATGCATGTACTGTGA
CCAACCGTGTCTTCTGACGCGAGATCTAGGTGGTGGGGTGAATTTGGGAA
TGGCCCACCGGTGGGCCAAATAGCCATTTCCTTTAAATTATCATATGCTC
TTGCTGCTCTACGTCGATATTGGCTATGATAGGGAGGTACGGCAAAAAAT
CAACCAAGGAAAAATGGACTTATTCATATCGTGATTACTGGAAAGAAGCA
GCTATGAATACCATTGTAAAAGTGAAGGGAGAAAATAAGTGAGAATATTT
CGTATTCGTATTAATATGGATGTAGACCCTAGAGGCGAAAATCTGACTGC
TATTTGTGAAAGATGGAATTTTTCACTTTTTTATTTTTCACGTTGTAGCC
GGTCGCCCCGGTAGCTCAGAGGTGACCTCGTAACCTGCCACGTTGGGACG
TGAGTTCGATCCCGGCAAACGGGATTTTTCTCACTAAAAACTAAAAACTA
AAAAAAAAATGCCCAACGAGTGGAGAACGATTAAATCGCTAGTACACAAA
ATTTGACTTCACGGTCGACGAGGGAAAGGAATGACTGAATCCTTCTCGCG
AGAAAAATTGAGGCACGCACCGCATAAGGAAGGTGGATGAGAAATCCTGT
GTGAACTTTCTCCTGCGTGACCCCGGCTGATACGTCCAACGAACTTGATG
TCCAGAAAACAGAAAACAACACAACATAGGAGCCTCTGTAATCGTAGAGC
TATGTACTGTACTCAATTTAAACCCTAGAGGAAAATCCGACTCCCTAATT
GTGAATGCCGGAACTTTTTATTTTTTATTTTTAACGTAACCTCTGTAGTC
ATCACGCGGGTTCCCGCGGATTTTCACCGCAATTATTAAAAGCATAGCAT
GAAGACGTGTACCTTACCTGTTCGGAGTTTTCGATTAGACAAGGAATAGA
GCGAAGGCTGACCTACGAAAGTCACACACACACACACACATTCATACCCA
CCTTTTTGCTTTTTGGGTGACAACTTCCCTTCGCACGATCAAAACCAGGG
GAACGACGTGGCGATTACCATGTACGAAGCGTTGGGTTTTGAGCTCACCG
CGCTGGAGGACGAGATGTTGGCTCGGAGCCGAAAACGACCGGCTCGGATA
TACTTCTCCAAACCTTTGGTCTAGACTTTCACATCCGTACCACTGTCTTG
GCGATATTTTGAGCTCCGCTGTGTACGTGTCGGAAAATAAAAAACGCGCA
GCACTATCCAGCGAGACATAAGGTTGAATGCATACTATTTATAACTGTAA
AGCTGCTCTCGGCCAACCGTACACGATTTTAAGTATTTAGTATCAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig117:668386..674281-

>mRNA_F-serratus_M_contig117.1401.1 ID=mRNA_F-serratus_M_contig117.1401.1|Name=mRNA_F-serratus_M_contig117.1401.1|organism=Fucus serratus male|type=CDS|length=2010bp|location=Sequence derived from alignment at F-serratus_M_contig117:668386..674281- (Fucus serratus male)
ATGCAAATCCTGTCGGTGGCTGTACTATCGTACGGGGTCTCGGTTGGGGT
GGCTTTTACACCACCGAGTATGATACCCATCAGCAATGCCAGTGCCGGTA
GCAGTTGCTTGCGTGGATGCTCAACGAGGGGACCGGTACCCTGTTGGATT
CAACGGCCTCATAAAGGTACACGTGCGCGGAACGTGAACTCGCGGAGACT
CCTCTTAAGCCGTGATCAAGATGGACCCATTATGGTGGTTGAATCGAAGA
AATCTGGACGTGATGCTCTTGCTGTCACGAAATCAAGATCACAAACGAGA
GTTTCTCAGCGTGTGGAACAAGATCAAGTCCTTGGAAAAATGGAGAAGCG
GGACGACGTGAGAGTACGCACGGGGCGAGGTAGTGACATGATGCAGGTGG
CACGCCTCTGCGTCGACACTTTCCGGGGGCCATTCGAGTGGTGGATGCTA
CCCCTTCGAGTTTATCGGATGCAAATCCTGTCGGTGGCTGTACTATCGTA
CGGGGTCTCGGTTGGGGTGGCTTTTACACCACCGAGTATGATACCCATCA
GCAATGCCAGTGCCGGTAGCAGTTGCTTGCGTGGATGCTCAACGAGGGGA
CCGGTACCCTGTTGGATTCAACGGCCTCATAAAGGTACACGTGCGCGGAA
CGTGAACTCGCGGAGACTCCTCTTAAGCCGTGATCAAGATGGACCCATTA
TGGTGGTTGAATCGAAGAAATCTGGACGTGATGCTCTTGCTGTCACGAAA
TCAAGATCACAAACGAGAGTTTCTCAGCGTGTGGAACAAGATCAAGTCCT
TGGAAAAATGGAGAAGCGGGACGACGTGAGAGTACGCACGGGGCGAGGTA
GTGACATGATGCAGGTGGCACGCCTCTGCGTCGACACTTTCCGGGGGCCA
TTCGAGTGGTGGATGCTACCCCTTCGAGTTTATCGGGAACTTGCTTTCTA
CCAGCAGGTGGGGCAAAGGTGCGGGGGTATCTTGCGGAATGAGATACAGC
ACAGTATTGTCGTAGTCGAAGACGCTACGTCCCACGAGATCGTAGGCTTT
CTAGAGGTCGGTTTGCTGCCGAGACCGAGATCTTCAGAGGAAATTGCGAT
GCAAAAGGCGAGGAAGAACGAGCTTGCAACGGACGGTGGAGATGTTTTGG
AGAACGACGGAGATGGCAGCAGCGGTGTCGGTACCATTTCGTTCGAGAAG
TCGCCTGATGTGGCGTACCTGGCAAACGTCGTGGTGGATCGAAATCAGAG
AAGGAGGGGAATTGGTCGCCTCATGATCAACTCGGCGATTGAGATTGTCA
AAGAGCTTTGGCCACTTGAGAAGCGCATCTACGTTACCGTCGAGAAGGAA
CTTGCTTTCTACCAGCAGGTGGGGCAAAGGTGCGGGGGTATCTTGCGGAA
TGAGATACAGCACAGTATTGTCGTAGTCGAAGACGCTACGTCCCACGAGA
TCGTAGGCTTTCTAGAGGTCGGTTTGCTGCCGAGACCGAGATCTTCAGAG
GAAATTGCGATGCAAAAGGCGAGGAAGAACGAGCTTGCAACGGACGGTGG
AGATGTTTTGGAGAACGACGGAGATGGCAGCAGCGGTGTCGGTACCATTT
CGTTCGAGAAGTCGCCTGATGTGGCGTACCTGGCAAACGTCGTGGTGGAT
CGAAATCAGAGAAGGAGGGGAATTGGTCGCCTCATGATCAACTCGGCGAT
TGAGATTGTCAAAGAGCTTTGGCCACTTGAGAAGCGCATCTACGTTACCG
TCGAGAAGGGGAACGACGTGGCGATTACCATGTACGAAGCGTTGGGTTTT
GAGCTCACCGCGCTGGAGGACGAGATGTTGGCTCGGAGCCGAAAACGACC
GGCTCGGATATACTTCTCCAAACCTTTGGTCTAGGGGAACGACGTGGCGA
TTACCATGTACGAAGCGTTGGGTTTTGAGCTCACCGCGCTGGAGGACGAG
ATGTTGGCTCGGAGCCGAAAACGACCGGCTCGGATATACTTCTCCAAACC
TTTGGTCTAG
back to top