mRNA_F-serratus_M_contig117.1396.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig117.1396.1
Unique NamemRNA_F-serratus_M_contig117.1396.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig117.1396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig117contigF-serratus_M_contig117:630795..631445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size416
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929072.6506095-CDS-F-serratus_M_contig117:630794..6309601622929072.6506095-CDS-F-serratus_M_contig117:630794..630960Fucus serratus maleCDSF-serratus_M_contig117 630795..630960 +
1690962692.7857857-CDS-F-serratus_M_contig117:630794..6309601690962692.7857857-CDS-F-serratus_M_contig117:630794..630960Fucus serratus maleCDSF-serratus_M_contig117 630795..630960 +
1622929072.6666493-CDS-F-serratus_M_contig117:631196..6314441622929072.6666493-CDS-F-serratus_M_contig117:631196..631444Fucus serratus maleCDSF-serratus_M_contig117 631197..631444 +
1690962692.8046803-CDS-F-serratus_M_contig117:631196..6314441690962692.8046803-CDS-F-serratus_M_contig117:631196..631444Fucus serratus maleCDSF-serratus_M_contig117 631197..631444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig117.1396.1prot_F-serratus_M_contig117.1396.1Fucus serratus malepolypeptideF-serratus_M_contig117 630795..631444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig117.1396.1

>prot_F-serratus_M_contig117.1396.1 ID=prot_F-serratus_M_contig117.1396.1|Name=mRNA_F-serratus_M_contig117.1396.1|organism=Fucus serratus male|type=polypeptide|length=138bp
GEPPASPRGVAESVSSGARKTVELNHPSNGRQKESCPLQHSIAKIPKSTS
TESLKGLASNADRTSLRQKVGNNEELMERTVVPTAKAAVESASSCSASSP
PMSVPECASMSRSSKPIAEAAFLFGSPGQAHAASSSPR
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mRNA from alignment at F-serratus_M_contig117:630795..631445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig117.1396.1 ID=mRNA_F-serratus_M_contig117.1396.1|Name=mRNA_F-serratus_M_contig117.1396.1|organism=Fucus serratus male|type=mRNA|length=651bp|location=Sequence derived from alignment at F-serratus_M_contig117:630795..631445+ (Fucus serratus male)
GGAGAACCTCCCGCATCTCCGAGAGGAGTGGCAGAATCGGTATCTTCGGG
AGCGAGGAAAACCGTCGAGCTCAACCACCCGTCTAACGGAAGGCAGAAGG
AAAGTTGTCCACTTCAACACTCCATCGCGAAAATTCCCAAGTCTACGTCG
ACAGAATCATTGAAAGGTGTGATCTAAGCAAGCGAAGCGGTTATATAGGT
AGTCAGTGAAGGTCGAAGGCTCTCCTGAATGTCGACTAGCCATCGGACGT
GTTGCCGGTTCTCCACGCTTGCGATATAATTGGTCGGTAATCACAGTTTG
AGTAAGAATTAGTCCACGAGCGATTTCGACCCTGTACTCCCCACGCTACG
CGAATCTTACGCCGACGGCTGGTCACAAAAATATCATATCCGAATCCAAC
AGGTTTGGCGTCGAACGCAGATCGCACAAGCCTCAGGCAGAAGGTTGGAA
ATAACGAGGAACTTATGGAGCGTACGGTTGTTCCAACGGCTAAAGCGGCA
GTCGAGAGCGCTTCCTCTTGCAGCGCTTCCTCGCCGCCGATGTCCGTGCC
CGAGTGCGCCTCCATGTCGCGAAGTTCGAAGCCTATCGCGGAGGCTGCCT
TCTTATTTGGTTCGCCTGGGCAGGCTCACGCCGCATCGAGTTCCCCTCGT
G
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Coding sequence (CDS) from alignment at F-serratus_M_contig117:630795..631445+

>mRNA_F-serratus_M_contig117.1396.1 ID=mRNA_F-serratus_M_contig117.1396.1|Name=mRNA_F-serratus_M_contig117.1396.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig117:630795..631445+ (Fucus serratus male)
GGAGAACCTCCCGCATCTCCGAGAGGAGTGGCAGAATCGGTATCTTCGGG
AGCGAGGAAAACCGTCGAGCTCAACCACCCGTCTAACGGAAGGCAGAAGG
AAAGTTGTCCACTTCAACACTCCATCGCGAAAATTCCCAAGTCTACGTCG
ACAGAATCATTGAAAGGGAGAACCTCCCGCATCTCCGAGAGGAGTGGCAG
AATCGGTATCTTCGGGAGCGAGGAAAACCGTCGAGCTCAACCACCCGTCT
AACGGAAGGCAGAAGGAAAGTTGTCCACTTCAACACTCCATCGCGAAAAT
TCCCAAGTCTACGTCGACAGAATCATTGAAAGGTTTGGCGTCGAACGCAG
ATCGCACAAGCCTCAGGCAGAAGGTTGGAAATAACGAGGAACTTATGGAG
CGTACGGTTGTTCCAACGGCTAAAGCGGCAGTCGAGAGCGCTTCCTCTTG
CAGCGCTTCCTCGCCGCCGATGTCCGTGCCCGAGTGCGCCTCCATGTCGC
GAAGTTCGAAGCCTATCGCGGAGGCTGCCTTCTTATTTGGTTCGCCTGGG
CAGGCTCACGCCGCATCGAGTTCCCCTCGTGTTTGGCGTCGAACGCAGAT
CGCACAAGCCTCAGGCAGAAGGTTGGAAATAACGAGGAACTTATGGAGCG
TACGGTTGTTCCAACGGCTAAAGCGGCAGTCGAGAGCGCTTCCTCTTGCA
GCGCTTCCTCGCCGCCGATGTCCGTGCCCGAGTGCGCCTCCATGTCGCGA
AGTTCGAAGCCTATCGCGGAGGCTGCCTTCTTATTTGGTTCGCCTGGGCA
GGCTCACGCCGCATCGAGTTCCCCTCGT
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