mRNA_F-serratus_M_contig117.1390.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig117.1390.1
Unique NamemRNA_F-serratus_M_contig117.1390.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig117.1390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig117contigF-serratus_M_contig117:272003..272600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size598
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig117.1390.1prot_F-serratus_M_contig117.1390.1Fucus serratus malepolypeptideF-serratus_M_contig117 272152..272517 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929072.7318323-UTR-F-serratus_M_contig117:272002..2721511622929072.7318323-UTR-F-serratus_M_contig117:272002..272151Fucus serratus maleUTRF-serratus_M_contig117 272003..272151 +
1690962692.8151534-UTR-F-serratus_M_contig117:272002..2721511690962692.8151534-UTR-F-serratus_M_contig117:272002..272151Fucus serratus maleUTRF-serratus_M_contig117 272003..272151 +
1622929072.7675178-UTR-F-serratus_M_contig117:272517..2726001622929072.7675178-UTR-F-serratus_M_contig117:272517..272600Fucus serratus maleUTRF-serratus_M_contig117 272518..272600 +
1690962692.8568916-UTR-F-serratus_M_contig117:272517..2726001690962692.8568916-UTR-F-serratus_M_contig117:272517..272600Fucus serratus maleUTRF-serratus_M_contig117 272518..272600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929072.7453854-CDS-F-serratus_M_contig117:272151..2725171622929072.7453854-CDS-F-serratus_M_contig117:272151..272517Fucus serratus maleCDSF-serratus_M_contig117 272152..272517 +
1690962692.840842-CDS-F-serratus_M_contig117:272151..2725171690962692.840842-CDS-F-serratus_M_contig117:272151..272517Fucus serratus maleCDSF-serratus_M_contig117 272152..272517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig117.1390.1

>prot_F-serratus_M_contig117.1390.1 ID=prot_F-serratus_M_contig117.1390.1|Name=mRNA_F-serratus_M_contig117.1390.1|organism=Fucus serratus male|type=polypeptide|length=122bp
MAGGWEGNRRCQIVTSRAIHKEDLLNRPKCAYFQGSRCEICYISTLASTK
STVYLVDISPGGRQETENAYAIAIQFHYFEEKASTKQFKSLLLICTLDAR
YKGFTQIIRKGGLRYLRAQAG*
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mRNA from alignment at F-serratus_M_contig117:272003..272600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig117.1390.1 ID=mRNA_F-serratus_M_contig117.1390.1|Name=mRNA_F-serratus_M_contig117.1390.1|organism=Fucus serratus male|type=mRNA|length=598bp|location=Sequence derived from alignment at F-serratus_M_contig117:272003..272600+ (Fucus serratus male)
AGGAACAGACACATAAGATATATGTAGAAAATGTAGAGTCCCGGCTGAGA
CAAGAGGACGGCTGGCAGGAGAGGGACATGTGACCTGGTTACAAGCACTG
CGACCAACACACACGCTACTCAAACTCTCCCGTACACACAACCAGGCAAA
TGGCTGGAGGGTGGGAAGGAAACAGACGTTGTCAGATAGTAACGTCAAGG
GCAATACACAAAGAAGACCTGCTTAACCGCCCCAAATGCGCCTATTTTCA
AGGGTCGAGGTGCGAGATATGCTACATTAGTACTCTAGCAAGTACAAAGT
CTACGGTATACCTGGTAGATATTTCTCCAGGTGGTAGACAGGAGACAGAA
AATGCTTACGCCATAGCCATACAGTTCCATTACTTCGAAGAAAAGGCCTC
TACAAAACAGTTCAAGTCTCTATTATTGATATGCACACTTGACGCGCGTT
ATAAGGGTTTTACCCAGATCATTCGGAAGGGTGGCCTCAGATATCTCCGC
GCGCAAGCGGGATGATGGGAATAATTATATTTAAGCGCGGCAACTCCAAG
AGACTGCTTAGTTTGTCGCCACTGTTATAGTACTCCCCAACTCTTGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig117:272003..272600+

>mRNA_F-serratus_M_contig117.1390.1 ID=mRNA_F-serratus_M_contig117.1390.1|Name=mRNA_F-serratus_M_contig117.1390.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig117:272003..272600+ (Fucus serratus male)
ATGGCTGGAGGGTGGGAAGGAAACAGACGTTGTCAGATAGTAACGTCAAG
GGCAATACACAAAGAAGACCTGCTTAACCGCCCCAAATGCGCCTATTTTC
AAGGGTCGAGGTGCGAGATATGCTACATTAGTACTCTAGCAAGTACAAAG
TCTACGGTATACCTGGTAGATATTTCTCCAGGTGGTAGACAGGAGACAGA
AAATGCTTACGCCATAGCCATACAGTTCCATTACTTCGAAGAAAAGGCCT
CTACAAAACAGTTCAAGTCTCTATTATTGATATGCACACTTGACGCGCGT
TATAAGGGTTTTACCCAGATCATTCGGAAGGGTGGCCTCAGATATCTCCG
CGCGCAAGCGGGATGAATGGCTGGAGGGTGGGAAGGAAACAGACGTTGTC
AGATAGTAACGTCAAGGGCAATACACAAAGAAGACCTGCTTAACCGCCCC
AAATGCGCCTATTTTCAAGGGTCGAGGTGCGAGATATGCTACATTAGTAC
TCTAGCAAGTACAAAGTCTACGGTATACCTGGTAGATATTTCTCCAGGTG
GTAGACAGGAGACAGAAAATGCTTACGCCATAGCCATACAGTTCCATTAC
TTCGAAGAAAAGGCCTCTACAAAACAGTTCAAGTCTCTATTATTGATATG
CACACTTGACGCGCGTTATAAGGGTTTTACCCAGATCATTCGGAAGGGTG
GCCTCAGATATCTCCGCGCGCAAGCGGGATGA
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