mRNA_F-serratus_M_contig1165.1356.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1165.1356.1
Unique NamemRNA_F-serratus_M_contig1165.1356.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1165.1356.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.100e-16
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 AAKEVFRDEPDKTITCTTCYREIPCSLTKKIISAACNDVSETHAKRTTYDDVFFFRTIVDEIL----RARPVNNRKK 219
            AAKEV+  +  KTI C  CYR+I C  TKKI+S ACN  SETHAKRTTYD VFFF T++ ++L    R+RP +  KK
Sbjct:  129 AAKEVYGGDLKKTIKCA-CYRDITCPYTKKIVSDACNQCSETHAKRTTYDQVFFFGTMIQDVLDEQNRSRPRHKMKK 204
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1165.1356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JK41_9PHAE1.100e-1657.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1165contigF-serratus_M_contig1165:172031..173405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size288
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1165.1356.1prot_F-serratus_M_contig1165.1356.1Fucus serratus malepolypeptideF-serratus_M_contig1165 172031..173405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929066.7044606-CDS-F-serratus_M_contig1165:172030..1721331622929066.7044606-CDS-F-serratus_M_contig1165:172030..172133Fucus serratus maleCDSF-serratus_M_contig1165 172031..172133 +
1690962690.0995116-CDS-F-serratus_M_contig1165:172030..1721331690962690.0995116-CDS-F-serratus_M_contig1165:172030..172133Fucus serratus maleCDSF-serratus_M_contig1165 172031..172133 +
1622929066.7175567-CDS-F-serratus_M_contig1165:172825..1729781622929066.7175567-CDS-F-serratus_M_contig1165:172825..172978Fucus serratus maleCDSF-serratus_M_contig1165 172826..172978 +
1690962690.1081777-CDS-F-serratus_M_contig1165:172825..1729781690962690.1081777-CDS-F-serratus_M_contig1165:172825..172978Fucus serratus maleCDSF-serratus_M_contig1165 172826..172978 +
1622929066.7274885-CDS-F-serratus_M_contig1165:173373..1734051622929066.7274885-CDS-F-serratus_M_contig1165:173373..173405Fucus serratus maleCDSF-serratus_M_contig1165 173374..173405 +
1690962690.116822-CDS-F-serratus_M_contig1165:173373..1734051690962690.116822-CDS-F-serratus_M_contig1165:173373..173405Fucus serratus maleCDSF-serratus_M_contig1165 173374..173405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1165.1356.1

>prot_F-serratus_M_contig1165.1356.1 ID=prot_F-serratus_M_contig1165.1356.1|Name=mRNA_F-serratus_M_contig1165.1356.1|organism=Fucus serratus male|type=polypeptide|length=96bp
AAKEVFRDEPDKTITCTTCYREIPCSLTKKIISAACNDVSETHAKRTTYD
DVFFFRTIVDEILRARPVNNRKKRHIRGVESLLEERKKVNAKRYLA
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mRNA from alignment at F-serratus_M_contig1165:172031..173405+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1165.1356.1 ID=mRNA_F-serratus_M_contig1165.1356.1|Name=mRNA_F-serratus_M_contig1165.1356.1|organism=Fucus serratus male|type=mRNA|length=1375bp|location=Sequence derived from alignment at F-serratus_M_contig1165:172031..173405+ (Fucus serratus male)
GCGGCGAAGGAGGTATTCAGGGATGAACCAGACAAGACCATCACGTGCAC
CACCTGCTACCGTGAAATCCCGTGCTCCTTGACCAAGAAAATCATCTCGG
CGGGTAAGAAGAGAAGAAACAGTTATTTTGTAATACTATAAATTTTTATG
GTGTAGCCAAAAATCTCCGAGAACTTATCTCTCTCCTCGCGACCTCTTTT
GTCAGTTGAAGAGTGTATTTTTTTATCGACTGCGGCTACTACTACTACAG
TAGTAGTATGTACCGAACCCATTCAAACTGCACAGAGTCACGTTACCCGC
AGCAAGTTGAACAACTCGGTCAGTGCGATCACTAAGGTTCACTCTGAATG
TATATGTCGGTCGTCCCGGTAGCTCAGAGGTACCTCGAAACCCTCTGACA
CGTTGGGACGTGAGTTCGATCCCGGCAAACGGGATTTTTCTCACTAAAAA
CTGAAAAACTAAAATAAAAATGCCCCACGGGTGGAGAACGATCGATTCGT
TAGTACCCAAAATTCGACTTCACAGTCGACGAGGTAAAGGAATGGCTGAA
TCCTTCTCGCGATAAAAATTAAGGCACGCACCGCAGAAAGAAGGTGGATG
AGAAATCCTGTGTAACCTTCCTTTTGCGTGACCCCGGCTGGTACGTCCAT
TGATGTCCAGAATGGATGGGAAGGAAACACACAACACACATATGTATATG
TTTATTATGTATATTATGCCGGGAACGGGAAATAATGGCGAGGTATACGC
GTTCGCTATTTTTTCGGTTGTTTGCATTGCGGGCATGCGCCACAGCCTGC
AACGATGTGTCGGAGACGCACGCGAAGCGCACAACATACGACGACGTGTT
CTTCTTCAGGACAATTGTGGATGAGATTCTGAGGGCGCGGCCGGTCAACA
ACAGAAAAAAGCGTCACATCCGGGGAGTTGAGAGCCTGCTGGAAGAACGT
GAGTCTTTAGTCTGTTCGCTAGCTGGCGGCGATGCATTGCATTGATTGCT
GTGCGTGCTCTGTTATCTAGCTCTTGGGCTATATAAACGGCGCCTTTGAA
ATCGACTGAATGAACAGCTTTAGGCTCGTTAGTGTATGGTGGAATGCTAC
ACAACAAGCGTGGTGTACTGCTGAGCGTTGTAGCGTGTTCCTTGTTCGTG
TATGTATATGTTTTATCGCATCTGGTCCTCTAAGATGGCAGGGTTCCGCT
GGTTCCTTGTTCACAACAAGCAATCAACCTTTGTGTAAGTACCACCACCA
CTACTATATCAATTTTGGATGGACTACTATGAAACAGACATACATGCAGC
CACTTATTATTATGTGGGTATTTTTTGTTGCGACTTGTTGCAGGTAAAAA
GGTTAACGCCAAGCGATACCTCGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1165:172031..173405+

>mRNA_F-serratus_M_contig1165.1356.1 ID=mRNA_F-serratus_M_contig1165.1356.1|Name=mRNA_F-serratus_M_contig1165.1356.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig1165:172031..173405+ (Fucus serratus male)
GCGGCGAAGGAGGTATTCAGGGATGAACCAGACAAGACCATCACGTGCAC
CACCTGCTACCGTGAAATCCCGTGCTCCTTGACCAAGAAAATCATCTCGG
CGGGCGGCGAAGGAGGTATTCAGGGATGAACCAGACAAGACCATCACGTG
CACCACCTGCTACCGTGAAATCCCGTGCTCCTTGACCAAGAAAATCATCT
CGGCGGCCTGCAACGATGTGTCGGAGACGCACGCGAAGCGCACAACATAC
GACGACGTGTTCTTCTTCAGGACAATTGTGGATGAGATTCTGAGGGCGCG
GCCGGTCAACAACAGAAAAAAGCGTCACATCCGGGGAGTTGAGAGCCTGC
TGGAAGAACCCTGCAACGATGTGTCGGAGACGCACGCGAAGCGCACAACA
TACGACGACGTGTTCTTCTTCAGGACAATTGTGGATGAGATTCTGAGGGC
GCGGCCGGTCAACAACAGAAAAAAGCGTCACATCCGGGGAGTTGAGAGCC
TGCTGGAAGAACGTAAAAAGGTTAACGCCAAGCGATACCTCGCTGTAAAA
AGGTTAACGCCAAGCGATACCTCGCT
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