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Homology
BLAST of mRNA_F-serratus_M_contig1161.1342.1 vs. uniprot
Match: D8LTP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP1_ECTSI) HSP 1 Score: 213 bits (542), Expect = 3.440e-65 Identity = 103/157 (65.61%), Postives = 119/157 (75.80%), Query Frame = 1
Query: 1 LHIGRLLKTHVLDLFGPILDPVGYRLDLNTYFDKQKISYMGKANAMGGAANIILNTMCYSVVFALFNVHPKTALKTSMVYYAAKVVTDYVVRAWDFLRRQRGRMPIAQTPWSGCIQAALTFAGWYFHRNALYAAGAQGAHVLVVGPGAIGLLEPAVR 471
LHIG LLKTHVLDLFGPI+DP+GYRLDL+ YFD++ I YMGKANAMGG N+ LN +CYSVVFA+F VHP ALK SMVYY +VVTDYVV + RR+ G+M I TPWS I A LT G+Y HR+ALY A G H L VGPGA+GL+EP VR
Sbjct: 197 LHIGNLLKTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMGGPRNMALNILCYSVVFAVFRVHPSVALKLSMVYYGGRVVTDYVVLFTEPARRKLGQMTIVHTPWSAVIHAGLTILGYYCHRSALYTAEIPGLHPLAVGPGAVGLVEPVVR 353
BLAST of mRNA_F-serratus_M_contig1161.1342.1 vs. uniprot
Match: D8LTP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP3_ECTSI) HSP 1 Score: 197 bits (501), Expect = 2.910e-59 Identity = 91/157 (57.96%), Postives = 116/157 (73.89%), Query Frame = 1
Query: 1 LHIGRLLKTHVLDLFGPILDPVGYRLDLNTYFDKQKISYMGKANAMGGAANIILNTMCYSVVFALFNVHPKTALKTSMVYYAAKVVTDYVVRAWDFLRRQRGRMPIAQTPWSGCIQAALTFAGWYFHRNALYAAGAQGAHVLVVGPGAIGLLEPAVR 471
LH+G LLKTH+LDLFGP+LDP+GYRLDL TY+D+ +I YMG NAM G N+ +N CY++VFA+ HP ALKT+MVY+ A+VVTDY+V + +RR+ G M TPWSG IQA LT G+Y+HR+ L+ A G H LVVGPG +GL+EP VR
Sbjct: 204 LHVGTLLKTHLLDLFGPMLDPIGYRLDLTTYYDEAEIPYMGNPNAMDGPHNLAMNIFCYALVFAVIRAHPPLALKTAMVYFGARVVTDYLVMTAEPIRRKLGLMTAVHTPWSGMIQAGLTVLGFYYHRHTLHTASVTGFHPLVVGPGVVGLVEPLVR 360
BLAST of mRNA_F-serratus_M_contig1161.1342.1 vs. uniprot
Match: A0A6H5JS93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS93_9PHAE) HSP 1 Score: 192 bits (487), Expect = 8.650e-59 Identity = 87/157 (55.41%), Postives = 116/157 (73.89%), Query Frame = 1
Query: 1 LHIGRLLKTHVLDLFGPILDPVGYRLDLNTYFDKQKISYMGKANAMGGAANIILNTMCYSVVFALFNVHPKTALKTSMVYYAAKVVTDYVVRAWDFLRRQRGRMPIAQTPWSGCIQAALTFAGWYFHRNALYAAGAQGAHVLVVGPGAIGLLEPAVR 471
LH+G LLKTH+LDLFGP++DP+GYRLDL TY+D+++I YMG ANAM G N+ +N CY++VF + HP +LK +M+Y+ A+VVTDY+V + +RR+ G M TPWSG IQA LT G+ +HR+ L+ A G H LVVGPGA+GL+EP VR
Sbjct: 69 LHVGTLLKTHLLDLFGPMVDPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMNIFCYALVFVVIRAHPPLSLKMAMIYFGARVVTDYLVMVAEPIRRKLGLMTAVHTPWSGLIQAGLTVLGFSYHRHTLHTASVTGFHPLVVGPGAVGLVEPLVR 225
BLAST of mRNA_F-serratus_M_contig1161.1342.1 vs. uniprot
Match: A0A6H5JP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP85_9PHAE) HSP 1 Score: 201 bits (511), Expect = 1.170e-58 Identity = 101/162 (62.35%), Postives = 115/162 (70.99%), Query Frame = 1
Query: 1 LHIGRLLK-----THVLDLFGPILDPVGYRLDLNTYFDKQKISYMGKANAMGGAANIILNTMCYSVVFALFNVHPKTALKTSMVYYAAKVVTDYVVRAWDFLRRQRGRMPIAQTPWSGCIQAALTFAGWYFHRNALYAAGAQGAHVLVVGPGAIGLLEPAVR 471
LHIG LLK THVLDLFGPI+DP+GYRLDL+ YFD++ I YMGKANAM G N+ LN CYSVVF +F VHP ALK SMVYY A+VVTDYVV + RR+ G+M I TPWS I A LT G+ HRN LY A G H L VGPGA+GL+EP VR
Sbjct: 399 LHIGNLLKASYLLTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIFCYSVVFIVFQVHPSVALKLSMVYYGARVVTDYVVLVTEPARRKLGQMTIVHTPWSAVIHAGLTILGYCCHRNVLYTAEVPGLHPLAVGPGAVGLVEPVVR 560
BLAST of mRNA_F-serratus_M_contig1161.1342.1 vs. uniprot
Match: D7FJ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ41_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 1.320e-12 Identity = 48/131 (36.64%), Postives = 68/131 (51.91%), Query Frame = 1
Query: 10 GRLLKTHVLDLFGPILDPVGYRLDLNTYFDKQKISYMGKANAMGGAANIILNTMCY---SVVFALFNVHPKTALKTSMVYYAAKVVTDYVVRAWDFLRRQRGRMP-IAQTPWSGCIQAALTFAGWYFHRNA 390
G L+K + DL GP++DP+GY+++L TY AN M G AN+ + Y + VF F V P+ AL + V A+VVTDY+V A + +R + G + P S I L G+ FH NA
Sbjct: 281 GGLIKRALFDLLGPVIDPIGYQIELETYV----------ANIMRGPANLYITLAGYVSSASVFFHFFVDPQQALTITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPISAVIYLLLASLGFIFHGNA 401
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 471 |
| Cds size | 471 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929064.3037858-CDS-F-serratus_M_contig1161:113281..113456 | 1622929064.3037858-CDS-F-serratus_M_contig1161:113281..113456 | Fucus serratus male | CDS | F-serratus_M_contig1161 113282..113456 - |
| 1690962688.7889113-CDS-F-serratus_M_contig1161:113281..113456 | 1690962688.7889113-CDS-F-serratus_M_contig1161:113281..113456 | Fucus serratus male | CDS | F-serratus_M_contig1161 113282..113456 - |
| 1622929064.3155737-CDS-F-serratus_M_contig1161:114301..114372 | 1622929064.3155737-CDS-F-serratus_M_contig1161:114301..114372 | Fucus serratus male | CDS | F-serratus_M_contig1161 114302..114372 - |
| 1690962688.7997918-CDS-F-serratus_M_contig1161:114301..114372 | 1690962688.7997918-CDS-F-serratus_M_contig1161:114301..114372 | Fucus serratus male | CDS | F-serratus_M_contig1161 114302..114372 - |
| 1622929064.3987277-CDS-F-serratus_M_contig1161:114778..114889 | 1622929064.3987277-CDS-F-serratus_M_contig1161:114778..114889 | Fucus serratus male | CDS | F-serratus_M_contig1161 114779..114889 - |
| 1690962688.807366-CDS-F-serratus_M_contig1161:114778..114889 | 1690962688.807366-CDS-F-serratus_M_contig1161:114778..114889 | Fucus serratus male | CDS | F-serratus_M_contig1161 114779..114889 - |
| 1622929064.4186678-CDS-F-serratus_M_contig1161:117140..117230 | 1622929064.4186678-CDS-F-serratus_M_contig1161:117140..117230 | Fucus serratus male | CDS | F-serratus_M_contig1161 117141..117230 - |
| 1690962688.8153574-CDS-F-serratus_M_contig1161:117140..117230 | 1690962688.8153574-CDS-F-serratus_M_contig1161:117140..117230 | Fucus serratus male | CDS | F-serratus_M_contig1161 117141..117230 - |
| 1622929064.4354403-CDS-F-serratus_M_contig1161:117930..117954 | 1622929064.4354403-CDS-F-serratus_M_contig1161:117930..117954 | Fucus serratus male | CDS | F-serratus_M_contig1161 117931..117954 - |
| 1690962688.831319-CDS-F-serratus_M_contig1161:117930..117954 | 1690962688.831319-CDS-F-serratus_M_contig1161:117930..117954 | Fucus serratus male | CDS | F-serratus_M_contig1161 117931..117954 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1161.1342.1 >prot_F-serratus_M_contig1161.1342.1 ID=prot_F-serratus_M_contig1161.1342.1|Name=mRNA_F-serratus_M_contig1161.1342.1|organism=Fucus serratus male|type=polypeptide|length=157bp
LHIGRLLKTHVLDLFGPILDPVGYRLDLNTYFDKQKISYMGKANAMGGAA NIILNTMCYSVVFALFNVHPKTALKTSMVYYAAKVVTDYVVRAWDFLRRQ RGRMPIAQTPWSGCIQAALTFAGWYFHRNALYAAGAQGAHVLVVGPGAIG LLEPAVR back to topmRNA from alignment at F-serratus_M_contig1161:113282..117954- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1161.1342.1 ID=mRNA_F-serratus_M_contig1161.1342.1|Name=mRNA_F-serratus_M_contig1161.1342.1|organism=Fucus serratus male|type=mRNA|length=4673bp|location=Sequence derived from alignment at F-serratus_M_contig1161:113282..117954- (Fucus serratus male) CTGCACATCGGGCGCTTACTCAAGGTAGTACTCAATATAGAGTGTAAAAA
TGGCGACTGGTATGTCTTTGGGGGCGCGAGCGCGGCTTGTCAAGGTTTTC
GAGGAGAAAAAGGCGGGGGGGATGGGATGGGGGGAGGGGGCGATGATCGA
TCGCTACACTCGCGTTTCACGTTAAGAAAGGCGCGTTCTCCCTGTATATT
TGTGTTGTCTGCTCCGTTGGCGTGTACCCTTTTTGTGGAGTACCCTGCTA
TGTTGAGGGTGCCACCGCCCACCGCTCCTAACCTTCGCCCCCGACGTGCA
TGTACTTGCTCGTGGATTCTATACAGAGAGTAAACGGTTTCTCCTCGAGA
AAAAAAATCAAGGGAAAAAGGGGGGGGGGGGGTTTTTTTTTTCAAAAGTT
ATGTATACAGAAAGAAAGAAAGAAGAAGAAAAAAAAAGAAGAAAGAAGTA
CAAAAAGAGAGGAAGAAACAAGACAGAAAAAAAAGGAGAAATTCAACTCG
TGACCACTCGTATACTCATACGTAAGAAAATCTTACGAACTCCGCGGGAG
AGCTACGCCTACTCACGCTCGAACATGAAAAGGATACCGAACGATAAACC
CCAGTGATCGGTTGTGGGGTGTGACCGATCTTCTCCCCCTCCCCCCCCCC
CATCCTGCTACCATACTACTTGCTGACGTTGTCTTGCTGACGTTGTCTAA
CGTTCTGGACATGCATGCATTCAGACGCACGTGCTTGACCTCTTCGGGCC
AATCTTGGACCCCGTCGGCTACCGCTTGGATCTCAATACCTACTTTGACA
AGCAGAAAATATCGGTGAGTTCTTGACTTTTTGAGTTTATGGGGGGGGCA
GGTCTTGCTTTCTTTTCTTTCATTAGTATCATGTAGTATACATATACATG
TACGTTTCCCAACTCGTCGCGTTCTCTTAATATTAATAGTAGGTAACCTG
CATACCTGCTAGTAGTGCGGAAGTCGTGAGTTCGATTCCTGGCAAATCAG
AATTTGTGTTACTTTTTCCGTAGCGGAAAGCGTGAGAAGGCGAGTAAAAG
TAAGATTCAACCATTGGTTCAAGAGTTGTAAGAGTGCTGAACTGGTACCG
CAAACAAAAATCGTAAGGCGTGGACCACGGAGAATTGGGAAGATCCTTAG
CGTCCACAGGCAGGATGGTAACGTTGAGGTGAGGCCCATCGGCTATACTA
TAAGTGAGATGAAGAAATATATATATATATACAAAATTCAACCATTGGTT
GACGAGTTGTAAGAGTGCTGAACTTGCATCGCGATAAAAATTGCAAGGCG
TGAACCGGGGTGAGATGGGAAGATCCTTTGTGACCACAGGCAGGATGGTA
ATTAGAGGCCCATCGGCTATAAGTGTGATTAAAAAAAAAAAAAAAAAAAA
AAACGGTATATAATATGCATATACATGATAGATATCGGATATACATGATA
TATATATATGCATGATATATGCGCGTGTATTGGTGTGTTCTCACTGTATT
GGTCACGCCGGGGGATACAACAACCGATTCGGGGAGATCGCAGCAGTTCC
CCTCCCCTCCTCCCTGGTGTCCGCAATGACCATGACGACGATGACTGACA
CGTGGAGTACATACAACCCTACCGAATGTTTGAATGTTTGACGTTGGAGG
CGTTTCATCGAGAACGCTCTTTTTTGCCCCCCCCCCCAACTTTTCTCCCG
CCCCCCCGCGCCCCGCCCCCTATTATGCCGCTCTTACTACGGGATGTACC
AAATCCCCCCCCCGGATTTGGCAGAAATTAAGCGATATGTTGCATATGCT
GCAAACCATCACTCATCCCGCACGGTACGACTTAGGAAAATACAATCGTG
TTCTTGGGGGACGAAATTTCAAAACGGTCGTTAGCGGTCCAAACGTTGTC
TTAACCACGAGGTAAACGATGTATCGAAACGAACTTTATAACCTAGCACA
TACGCACTACTACTAAAGAAGTAGTGTTTTTTTGTTTCCCAGCTCCAGAG
AACGACAAGCAAGCCAACCTCCAAGGGAAACCCCGCCCTGCCCGGCCCTC
CCTCTGGTAGCCGGTTTACTGTATCTTATTTCCTGGTAGTTCTTCTCGTA
CCCGTACCTTCCTGAGTGCGTGCAGTCCATAAGGATGCGTCATCTAATGG
GTCCGCCAACCCTTCATCGGCTTCTCCCCGCAGAAGTGGTCTCTTCTGCC
TCGAGGCATAATATATAGAGCTTCCCCCGGGTTGGGGGATGGAGGCGTTT
TCCCTCGGAACAGTATTTGTTGTACTACGTAACACAGCACTGGGAATCGA
ATACTGCCGTAGGTTGTTGTACTCCTCTCCCTCCATGAGGATAGACGTCA
GGCATCCTATCCCTTCCCTGCCCTACCCCCCAAAGACGCACAAAAGTATA
TACCAGTGTATAGATACACTGCAAACGGTATTTTCAAAAACCCTCTAGGA
AAACCCTTCATGATGGCACTGTACTATTTGATAGATAAATAGAATACAGT
ATAGGAAACTATGACCCGAGTGGGGGATAGGGGGGGGGAGGGGCGTTTTC
TCCTGACACCACCGTGAGATCTGCAAGGGAAGCGGCGGCGGCGGCGGCAG
CGGATGGGTGACCATGTTTTCCCTCGCTCAAAGGGCCCTCGTTGGCAAGC
CACGCGAGCTCGTGCTTTGAGGTCTCGAGTGCAAATGGAGTGTTAACATG
TCGTCGTTCGAAGCGAGGGACGCTTCCGTGTTCGGGGTGTCTACTTTAAT
TTTCCCGTTGACCTCACGCGCAACAAAAGATGACAACGCAGCCTTATAGC
TGCGCAGCAGCGCATTGGGCCTTCTCTCGGCGCGTTTTCACCTGGTAAGG
TAGAACTGCTCTACCGTTGAACATTTTTGTAGTACTGCTTTTGAAGTAAA
AAGTAAAAGTAAAGCGAAGTTCAGGCGAACGCGAGACGCGTCCTTCATTT
CCAAGGCTGTGACTTATCGGGCAACGCAGAAAATTTCGTTGCCCTCGTAA
CCTACTTGGCTAAGGGCTGTGACCGTGCGTGCGACACCAATCCTTGTTTC
CGCCTCACCGAGCAGTACATGGGCAAGGCTAACGCCATGGGAGGGGCGGC
GAACATAATCCTCAACACCATGTGCTACAGCGTTGTCTTCGCACTCTTCA
ACGTACACCCGAAAACCGCCCTCAAGGTACATGGGCTGGTTCTCGGTCGG
GTGTCGAATGTTGTTGCGTCTTATGGGTCGCTGATGGGGGGGGCGCGATC
ACAACAGCTCGCGATTTGCCAAGTGGTTTTAGTGTTCCCCCTTGTAGTTT
TTGTAATACTGTAAAAAAAATGAGTTCTTCGAGCTCCGCGCGGTCGTATC
AAGTGAAAGGTCTACGGCCTGTTTCAAGGCGTACACACGATCGGTCAACA
CGGTCGGCCAACAACAATACCGCAACTTGAGGCCTCTTGTTTAACCTGCA
CGAGACGTTTTCGGTCGCGGCAGGTGGAACGATTTTTGCTTTTTTTTTTT
TCAGGTGTTTTCGTCGACTACTGCGTAATGCAGGGCCTTATTTATTTCTC
ATGTGCACGATTTTTTGCATGCTCTTCGTCAGACGTCCATGGTGTACTAC
GCTGCTAAAGTGGTAACGGACTACGTCGTTCGCGCCTGGGACTTCCTTCG
CAGGTGCGGTATCCTTTATGAGGGAGTGGTTCAGCAAGGAGTTTTTTTCA
ATCTGTCTCCCATATCAGTCGCCGTCACTTTCAACATGCTATAACCACTT
CATACCAATAGTGGGTGTGGGAAAGAGAGGCGTATATGAATTGGTCCATG
GTGACCTGCTAAGGCAGCACTCGTTCGGAACTACCTTGAGGTTTACTGGC
CCTGCGCCGACGGACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGT
GACCCGATGAACTCGGCACTTACCTGATGGCGAATGGCGGTTTAAAATAA
ATGTATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACC
AGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACAGGACTGC
CGAAACCGTCTCGCGAGACTAAATTCCCAGGCACGAACGCGGACAGGGGA
ATATTATTTTCTCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACC
AGGTTGATCCATACTCTTGCTATATGTGTGACCGTGCATACATACATACA
TCACTAACGAGGGAAGGGGGGTGCTATCCATTCCCTCCGCAAATGAGGAA
GAATGACGATGGCACAGTTTGTTCATTCCACCAGAGAATTCGTCGACCAA
CCTCCCGGTAAAGGCTGTTTCGATATCATCCCCTGCATCGGCTTTTGAGG
AAACATTCGTCGAACCCCTCGCCGGCTTTCCTACCGTCGACAACCACACG
AGTACGATTTTCTTGACCGTACATAGTTCTCCCCCGCCCCTTTACCTCGT
TCACCAAAAACGCTTCATCTCGTACGAACGCCCCTGGTGCGCTCGCAGAC
AGCGCGGGCGAATGCCAATCGCCCAGACGCCTTGGTCCGGCTGTATTCAA
GCCGCGCTCACCTTTGCTGGCTGGTACTTTCACCGAAACGCCTTGTACGC
GGCGGGGGCACAAGGAGCTCACGTTCTGGTGGTGGGGCCCGGCGCCATCG
GACTGCTCGAGCCCGCGGTGCGA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1161:113282..117954- >mRNA_F-serratus_M_contig1161.1342.1 ID=mRNA_F-serratus_M_contig1161.1342.1|Name=mRNA_F-serratus_M_contig1161.1342.1|organism=Fucus serratus male|type=CDS|length=942bp|location=Sequence derived from alignment at F-serratus_M_contig1161:113282..117954- (Fucus serratus male) CTGCACATCGGGCGCTTACTCAAGCTGCACATCGGGCGCTTACTCAAGAC GCACGTGCTTGACCTCTTCGGGCCAATCTTGGACCCCGTCGGCTACCGCT TGGATCTCAATACCTACTTTGACAAGCAGAAAATATCGACGCACGTGCTT GACCTCTTCGGGCCAATCTTGGACCCCGTCGGCTACCGCTTGGATCTCAA TACCTACTTTGACAAGCAGAAAATATCGTACATGGGCAAGGCTAACGCCA TGGGAGGGGCGGCGAACATAATCCTCAACACCATGTGCTACAGCGTTGTC TTCGCACTCTTCAACGTACACCCGAAAACCGCCCTCAAGTACATGGGCAA GGCTAACGCCATGGGAGGGGCGGCGAACATAATCCTCAACACCATGTGCT ACAGCGTTGTCTTCGCACTCTTCAACGTACACCCGAAAACCGCCCTCAAG ACGTCCATGGTGTACTACGCTGCTAAAGTGGTAACGGACTACGTCGTTCG CGCCTGGGACTTCCTTCGCAGACGTCCATGGTGTACTACGCTGCTAAAGT GGTAACGGACTACGTCGTTCGCGCCTGGGACTTCCTTCGCAGACAGCGCG GGCGAATGCCAATCGCCCAGACGCCTTGGTCCGGCTGTATTCAAGCCGCG CTCACCTTTGCTGGCTGGTACTTTCACCGAAACGCCTTGTACGCGGCGGG GGCACAAGGAGCTCACGTTCTGGTGGTGGGGCCCGGCGCCATCGGACTGC TCGAGCCCGCGGTGCGAACAGCGCGGGCGAATGCCAATCGCCCAGACGCC TTGGTCCGGCTGTATTCAAGCCGCGCTCACCTTTGCTGGCTGGTACTTTC ACCGAAACGCCTTGTACGCGGCGGGGGCACAAGGAGCTCACGTTCTGGTG GTGGGGCCCGGCGCCATCGGACTGCTCGAGCCCGCGGTGCGA back to top
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