mRNA_F-serratus_M_contig1160.1331.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1160.1331.1
Unique NamemRNA_F-serratus_M_contig1160.1331.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1160.1331.1 vs. uniprot
Match: A0A6H5KGP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP7_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 3.790e-114
Identity = 175/256 (68.36%), Postives = 195/256 (76.17%), Query Frame = 1 
Query:  154 PYKGSNTIVMMEWEKPYMRALVDALSITEQTRVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAETRPGVTIVEGFWQTALPALGRFDGIFFDDFPLPGTPDSSDLRGPASRWHAFIDLCVAHHLSLGGRITGYLARPLDLNRPDCDEATLTPFPVKVPPNCPYFPHGEAYIPLVTRRANLGVSEAGFGLATAPGG----ATSVPPSLVMEHPDAAVGGAVGS---RKRQKRLALEALVKESLGLSDV 900
            PYKG NTIVMMEWEKPYMRALVDAL+ITE++RVLEIG+G GYSADRIQE  PRSHT++EPDPVVL RLR WA  RPGV IVEGFWQTAL  LG FD +FFDDFPLP TPDSSDLRGPASRWHAFIDLC AHHL +GGRITGYLARPL L R  C  + L  FPV VP NCPYFP+GEAYIPL+TR      +E G     A GG     T++  SL+++       G+ GS   RKRQKR  LEALV+ESLGLS +
Sbjct:    2 PYKGENTIVMMEWEKPYMRALVDALAITEESRVLEIGYGIGYSADRIQEFSPRSHTIIEPDPVVLARLRGWAAARPGVRIVEGFWQTALATLGEFDAVFFDDFPLPDTPDSSDLRGPASRWHAFIDLCAAHHLPVGGRITGYLARPLPLERSGCVLSPLVAFPVDVPKNCPYFPYGEAYIPLITR------AETGAAKGAAAGGDDDAGTALASSLLVQSVQDRGNGSEGSSQERKRQKREVLEALVRESLGLSAI 251
[Close]
BLAST of mRNA_F-serratus_M_contig1160.1331.1 vs. uniprot
Match: D7G1B4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B4_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 1.930e-86
Identity = 139/213 (65.26%), Postives = 151/213 (70.89%), Query Frame = 1 
Query:   25 MARLRFGVDDLGKEILELVPTAAGAAD--------------GNGDVED-------------GRCCLEADK--PYKGSNTIVMMEWEKPYMRALVDALSITEQTRVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAETRPGVTIVEGFWQTALPALGRFDGIFFDDFPLPGTPDSSDLRGPASRWHAFIDLCVAHHLSLGGRITG 576
            MA L+FG D  GKEILELVP    AA               G+ D +D               C  E  +  PYKG NTIVMMEWEKPYMRALVDAL+ITE++RVLEIG+G GYSADRIQE  PRSHT++EPDPVVL RLR WA  RPGV IVEGFWQTAL  LG FD +FFDDFPLP TPDSSDLRGPASRWHAFIDLC AHHL +GGRITG
Sbjct:    5 MACLQFGTDAFGKEILELVPATPAAAPSETVAIAITAAPSIGDRDQDDHERAAGGATEAAAAACLGEGGESMPYKGENTIVMMEWEKPYMRALVDALAITEESRVLEIGYGIGYSADRIQEFSPRSHTIIEPDPVVLARLRGWAAARPGVRIVEGFWQTALATLGEFDAVFFDDFPLPDTPDSSDLRGPASRWHAFIDLCAAHHLPVGGRITG 217
[Close]
BLAST of mRNA_F-serratus_M_contig1160.1331.1 vs. uniprot
Match: A0A6G0WAM0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAM0_9STRA)

HSP 1 Score: 201 bits (510), Expect = 9.560e-58
Identity = 98/176 (55.68%), Postives = 119/176 (67.61%), Query Frame = 1 
Query:  178 VMMEWEKPYMRALVDALSITEQTRVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAETRPGVTIVEGFWQTALPALGRFDGIFFDDFPLPGTPDSSDLRGPASRWHAFIDLCVAHHLSLGGRITGYLARPLDLNRPDCDEATLTPFPVKVPPNCPYFPHGEAYIPLVT 705
            VMM WEK YM   V+AL+I+  + VLEIGFG  YSA+RIQ  +P SHT++E DPV L++LRAWA TRP V +V G WQ  L +LG FD IFFDD+PLP T     +    SRWH F+DL +  H  LGGR+TGYLAR +DL R  C    L PF V+ P NC YFP+  A +PLVT
Sbjct:   28 VMMAWEKDYMEKCVEALAISSSSDVLEIGFGLAYSANRIQSYQPHSHTIIECDPVSLKQLRAWATTRPNVRVVAGTWQNMLASLGEFDCIFFDDYPLPQTERDESIFS-ISRWHEFLDLVLNWHTKLGGRVTGYLAREIDLTREGCS-VKLEPFKVEAPSNCNYFPYSHALVPLVT 201
[Close]
BLAST of mRNA_F-serratus_M_contig1160.1331.1 vs. uniprot
Match: A0A024TBP2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBP2_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.210e-57
Identity = 97/176 (55.11%), Postives = 119/176 (67.61%), Query Frame = 1 
Query:  178 VMMEWEKPYMRALVDALSITEQTRVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAETRPGVTIVEGFWQTALPALGRFDGIFFDDFPLPGTPDSSDLRGPASRWHAFIDLCVAHHLSLGGRITGYLARPLDLNRPDCDEATLTPFPVKVPPNCPYFPHGEAYIPLVT 705
            VMM WE+ YM A VDAL IT  T VLEIGFG  YSA RIQ   P+SHT++E DPV    L+AW+++R  V  V G WQ+ LP+LG FD +FFDD+PLP       +    SRWH F+DL +  H+ +GGR+TGYLARP+DL R  CD   +TPF V VP NC YFP+  A +PLVT
Sbjct:   29 VMMAWERDYMEACVDALGITPATDVLEIGFGLAYSATRIQSYNPKSHTIIECDPVSFAALQAWSKSRANVVAVPGSWQSMLPSLGAFDCVFFDDYPLPPIERDESMYS-LSRWHDFLDLALNWHVHVGGRVTGYLARPIDLRRDGCD-VVMTPFQVDVPDNCTYFPYHAALVPLVT 202
[Close]
BLAST of mRNA_F-serratus_M_contig1160.1331.1 vs. uniprot
Match: W4FTU6_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FTU6_9STRA)

HSP 1 Score: 197 bits (502), Expect = 2.390e-56
Identity = 98/176 (55.68%), Postives = 119/176 (67.61%), Query Frame = 1 
Query:  178 VMMEWEKPYMRALVDALSITEQTRVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAETRPGVTIVEGFWQTALPALGRFDGIFFDDFPLPGTPDSSDLRGPASRWHAFIDLCVAHHLSLGGRITGYLARPLDLNRPDCDEATLTPFPVKVPPNCPYFPHGEAYIPLVT 705
            VMM WE+ YM   VDAL IT  + VLEIGFG  YSA  IQ   P+SHT++E DPV L  L  WA+TRP V IV G WQT L +LG FD IFFDD+PLP T     +    SRWH F+D  +  H+++GGR+TGYLAR +DL+R  C  A +TPF V+VP NC YFP+  A +PLVT
Sbjct:   26 VMMAWEREYMEKCVDALGITPTSDVLEIGFGLAYSATHIQSYSPKSHTIIECDPVSLVELEVWAKTRPNVVIVAGTWQTVLASLGSFDCIFFDDYPLPQTERDESIFS-ISRWHDFLDATLNWHVNVGGRVTGYLAREIDLSRDGCHVA-MTPFEVQVPLNCTYFPYKTALVPLVT 199
[Close]
BLAST of mRNA_F-serratus_M_contig1160.1331.1 vs. uniprot
Match: A0A1V9ZAL4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZAL4_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.030e-55
Identity = 97/175 (55.43%), Postives = 117/175 (66.86%), Query Frame = 1 
Query:  178 VMMEWEKPYMRALVDALSITEQTRVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAETRPGVTIVEGFWQTALPALGRFDGIFFDDFPLPGTPDSSDLRGPASRWHAFIDLCVAHHLSLGGRITGYLARPLDLNRPDCDEATLTPFPVKVPPNCPYFPHGEAYIPLV 702
            VMM WEK YM   V AL IT+   VLEIGFG G+SA +IQ  +P+S+T++E DPVVL R+RAWAE    V I+ G WQT L AL  +D IFFDD+PLP   +  D     SRW+ F+D  +  H  L GRITGYLARPLDL RP C   +LTP  V VP NC YFP+ +A +PLV
Sbjct:   25 VMMAWEKKYMEQCVSALQITQDCEVLEIGFGLGFSATKIQTCKPKSYTIIECDPVVLARVRAWAEAYDNVRIIAGTWQTQLAALPEYDCIFFDDYPLPQN-ERDDANYTISRWYDFLDAVLNWHTKLHGRITGYLARPLDLTRPGCS-VSLTPVQVDVPANCTYFPYAQALVPLV 197
[Close]
BLAST of mRNA_F-serratus_M_contig1160.1331.1 vs. uniprot
Match: A0A485KL38_9STRA (Aste57867_8776 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL38_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.640e-55
Identity = 97/176 (55.11%), Postives = 115/176 (65.34%), Query Frame = 1 
Query:  178 VMMEWEKPYMRALVDALSITEQTRVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAETRPGVTIVEGFWQTALPALGRFDGIFFDDFPLPGTPDSSDLRGPASRWHAFIDLCVAHHLSLGGRITGYLARPLDLNRPDCDEATLTPFPVKVPPNCPYFPHGEAYIPLVT 705
            VMMEWE+ YM   VD L+IT    VLEIGFG GYSA RIQ   PRSHT++E DPV L++L AWA  R  VTIV G WQ+ L +LG FD IFFDD+PLP       +    SRWH F+D  +  H +LGGR+TGYLAR +DL R  C   T TP  V VP NC YFP+  A +P +T
Sbjct:   25 VMMEWEREYMERCVDVLAITTTCDVLEIGFGLGYSASRIQSFAPRSHTIIECDPVCLKQLEAWAADRKNVTIVAGTWQSMLASLGAFDCIFFDDYPLPQMERDESIFS-ISRWHEFLDATLNWHTNLGGRVTGYLARDIDLRRDGC-HVTTTPLEVDVPANCNYFPYKTALVPCIT 198
[Close]
BLAST of mRNA_F-serratus_M_contig1160.1331.1 vs. uniprot
Match: T0QRP7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QRP7_SAPDV)

HSP 1 Score: 194 bits (492), Expect = 4.050e-55
Identity = 100/207 (48.31%), Postives = 127/207 (61.35%), Query Frame = 1 
Query:  142 EADKPYKGSNTIVMMEWEKPYMRALVDALSITEQTRVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAETRPGVTIVEGFWQTALPALGRFDGIFFDDFPLPGTPDSSDLRGPASRWHAFIDLCVAHHLSLGGRITGYLARPLDLNRPDCDEATLTPFPVKVPPNCPYFPHGEAYIPLVTRRANLGVSEAGFGLATAPG 762
            +AD         VMM WE+ YM   V+ L+IT  + VLEIGFG GYSA +I    P+++T++E DPVV+ R++AWA +   V IV G WQT LPAL  FD IFFDD+PLP   +  D     SRW+ F+DL +  H  L GRITGYLARPL L RP C   +L    V VPP+C YFP+ EA +PL+TR   +      +GL T  G
Sbjct:   13 DADVLLSSVGQQVMMAWERDYMEQCVERLAITPASDVLEIGFGLGYSATKIMTYSPKTYTIIECDPVVIARIKAWATSYSNVRIVHGAWQTQLPALPAFDCIFFDDYPLPQN-ERDDANHTISRWYEFLDLALNWHTKLHGRITGYLARPLSLERPGCT-VSLRAVSVDVPPHCSYFPYQEALVPLITRCEEVSPQITAYGLPTRSG 217
[Close]
BLAST of mRNA_F-serratus_M_contig1160.1331.1 vs. uniprot
Match: A0A1V9Z341_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z341_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.630e-51
Identity = 95/177 (53.67%), Postives = 115/177 (64.97%), Query Frame = 1 
Query:  178 VMMEWEKPYMRALVDALSITEQTRVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAETRPGVTIVEGFWQTALPALGRFDGIFFDDFPLPGTP-DSSDLRGPASRWHAFIDLCVAHHLSLGGRITGYLARPLDLNRPDCDEATLTPFPVKVPPNCPYFPHGEAYIPLVT 705
            VMM WE+ YM   VDAL I+    VLEIGFG GYSA  I + RPR++T++E DPVVLER+  WA     V IV G WQT L +L +FD +FFDD+PLP    D S      SRW+ F+D  +  H  LGGR+TGYLAR LD  RP C   TL P  V+VP NC YFP+ +A +PLVT
Sbjct:   23 VMMAWEREYMEQCVDALCISNSCDVLEIGFGLGYSATHIMKYRPRTYTIIECDPVVLERIHLWASDYDNVFIVAGTWQTQLCSLAKFDCVFFDDYPLPQNERDFSCFT--ISRWYEFLDSVLNWHTKLGGRVTGYLARELDFTRPGCS-VTLRPIEVQVPLNCNYFPYKQALVPLVT 196
[Close]
BLAST of mRNA_F-serratus_M_contig1160.1331.1 vs. uniprot
Match: A0A835Z832_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z832_9STRA)

HSP 1 Score: 180 bits (457), Expect = 5.290e-50
Identity = 107/245 (43.67%), Postives = 141/245 (57.55%), Query Frame = 1 
Query:   28 ARLRFGVDDLGKEILELVPTAAGAADGNGDVEDGRCCLEADKPYKGSNTIVMMEWEKPYMRALVDALSITEQTRVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAETRPGVTIVEGFWQTALPALGR-----FDGIFFDDFPLPGT----------PDSSDLRG-PA-SRWHAFIDLCVAHHLSLGGRITGYLARPLDLNRPDCDEATLTPFPVKVPPNCPYFPHGEAYIPLVTRR 711
            +RL +  DD GKEIL L  TA G+                  PY GSNT+VMMEWEK YM+ALV AL +   + VLEIG+GCGYSA+ IQ  +P+ H ++E    VL+R   WA  + G  +V+GFWQ  L +  +     FD +FFDDFPLP            PDS+     PA SRW  F++ C+ H ++ GG ITGY+ARP+DL     D   ++   V VP NCPYFP+ +A + L+T R
Sbjct:   31 SRLVYSTDDKGKEILVL-DTANGSM-----------------PYMGSNTVVMMEWEKEYMQALVQALRVETSSNVLEIGWGCGYSANAIQAHKPQQHVIIECSDDVLQRAVPWAARQSGARMVQGFWQDVLASQDKLSNVKFDRVFFDDFPLPAADGAASSAAAAPDSALTESTPARSRWCDFVEACLPH-MAEGGIITGYMARPVDLEVAGVD-VQISTCAVHVPDNCPYFPYDQACVALITVR 255
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1160.1331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGP7_9PHAE3.790e-11468.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1B4_ECTSI1.930e-8665.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0WAM0_9STRA9.560e-5855.68Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TBP2_9STRA1.210e-5755.11Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4FTU6_9STRA2.390e-5655.68Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A1V9ZAL4_9STRA1.030e-5555.43Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485KL38_9STRA1.640e-5555.11Aste57867_8776 protein n=1 Tax=Aphanomyces stellat... [more]
T0QRP7_SAPDV4.050e-5548.31Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9Z341_9STRA1.630e-5153.67Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A835Z832_9STRA5.290e-5043.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1160contigF-serratus_M_contig1160:76855..85105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.8
Seed ortholog evalue7.6e-70
Seed eggNOG ortholog2880.D7G1B4
KEGG rclassRC00003,RC00614
KEGG koko:K00542
KEGG ReactionR01883
KEGG Pathwayko00260,ko00330,ko01100,map00260,map00330,map01100
KEGG ModuleM00047
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein-arginine N5-methyltransferase activity
EggNOG OGsKOG1709@1,KOG1709@2759
EC2.1.1.2
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons4
Model size1326
Cds size885
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1160.1331.1prot_F-serratus_M_contig1160.1331.1Fucus serratus malepolypeptideF-serratus_M_contig1160 76879..84688 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.9307313-UTR-F-serratus_M_contig1160:76854..768781622929061.9307313-UTR-F-serratus_M_contig1160:76854..76878Fucus serratus maleUTRF-serratus_M_contig1160 76855..76878 +
1690962687.496706-UTR-F-serratus_M_contig1160:76854..768781690962687.496706-UTR-F-serratus_M_contig1160:76854..76878Fucus serratus maleUTRF-serratus_M_contig1160 76855..76878 +
1622929062.0113494-UTR-F-serratus_M_contig1160:84688..851051622929062.0113494-UTR-F-serratus_M_contig1160:84688..85105Fucus serratus maleUTRF-serratus_M_contig1160 84689..85105 +
1690962687.5535102-UTR-F-serratus_M_contig1160:84688..851051690962687.5535102-UTR-F-serratus_M_contig1160:84688..85105Fucus serratus maleUTRF-serratus_M_contig1160 84689..85105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.9485872-CDS-F-serratus_M_contig1160:76878..770921622929061.9485872-CDS-F-serratus_M_contig1160:76878..77092Fucus serratus maleCDSF-serratus_M_contig1160 76879..77092 +
1690962687.5081294-CDS-F-serratus_M_contig1160:76878..770921690962687.5081294-CDS-F-serratus_M_contig1160:76878..77092Fucus serratus maleCDSF-serratus_M_contig1160 76879..77092 +
1622929061.9663076-CDS-F-serratus_M_contig1160:77671..778981622929061.9663076-CDS-F-serratus_M_contig1160:77671..77898Fucus serratus maleCDSF-serratus_M_contig1160 77672..77898 +
1690962687.5219762-CDS-F-serratus_M_contig1160:77671..778981690962687.5219762-CDS-F-serratus_M_contig1160:77671..77898Fucus serratus maleCDSF-serratus_M_contig1160 77672..77898 +
1622929061.9793792-CDS-F-serratus_M_contig1160:83530..836401622929061.9793792-CDS-F-serratus_M_contig1160:83530..83640Fucus serratus maleCDSF-serratus_M_contig1160 83531..83640 +
1690962687.53539-CDS-F-serratus_M_contig1160:83530..836401690962687.53539-CDS-F-serratus_M_contig1160:83530..83640Fucus serratus maleCDSF-serratus_M_contig1160 83531..83640 +
1622929061.9968214-CDS-F-serratus_M_contig1160:84354..846881622929061.9968214-CDS-F-serratus_M_contig1160:84354..84688Fucus serratus maleCDSF-serratus_M_contig1160 84355..84688 +
1690962687.544629-CDS-F-serratus_M_contig1160:84354..846881690962687.544629-CDS-F-serratus_M_contig1160:84354..84688Fucus serratus maleCDSF-serratus_M_contig1160 84355..84688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1160.1331.1

>prot_F-serratus_M_contig1160.1331.1 ID=prot_F-serratus_M_contig1160.1331.1|Name=mRNA_F-serratus_M_contig1160.1331.1|organism=Fucus serratus male|type=polypeptide|length=295bp
MARLRFGVDDLGKEILELVPTAAGAADGNGDVEDGRCCLEADKPYKGSNT
IVMMEWEKPYMRALVDALSITEQTRVLEIGFGCGYSADRIQELRPRSHTV
VEPDPVVLERLRAWAETRPGVTIVEGFWQTALPALGRFDGIFFDDFPLPG
TPDSSDLRGPASRWHAFIDLCVAHHLSLGGRITGYLARPLDLNRPDCDEA
TLTPFPVKVPPNCPYFPHGEAYIPLVTRRANLGVSEAGFGLATAPGGATS
VPPSLVMEHPDAAVGGAVGSRKRQKRLALEALVKESLGLSDVLN*
back to top

mRNA from alignment at F-serratus_M_contig1160:76855..85105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1160.1331.1 ID=mRNA_F-serratus_M_contig1160.1331.1|Name=mRNA_F-serratus_M_contig1160.1331.1|organism=Fucus serratus male|type=mRNA|length=8251bp|location=Sequence derived from alignment at F-serratus_M_contig1160:76855..85105+ (Fucus serratus male)
GGGATCGAATTTCGACTGCTACGCATGGCGCGACTGCGCTTTGGTGTCGA
CGACCTGGGAAAGGAGATTCTTGAGCTCGTTCCGACCGCGGCGGGCGCAG
CCGATGGCAACGGTGACGTAGAGGATGGGCGCTGCTGCCTCGAGGCTGAC
AAGCCTTACAAGGGGTCAAACACCATTGTAATGATGGAGTGGGAGAAGCC
TTACATGCGCGCGCTCGTGGACGCCCTGTCCATCACGGGTGAGACGTGTA
GTCGTTGGAAAAAGCACTTGTACAGTGTATTAGTGAAATATTTGTCTGTA
TGTGACAGCACAGAACCGCCCGCCTTCTTCGCACTCGGAAACATGCGCGT
AATATGTGCAGCGTGTTTGCTGTATTTTTTTGGCTCAAGCTTGATATGGG
CGTTTGGATGCCCTACACGCTTCCCGCGTGTCAAATTTATAATTTGAAAA
GCGGGCGCAAAAAAAGCATCGAGTGAAAAAAAAAAAAAAAAACTGTCTTG
TTCGGTGGCAAAAACATCTTGCCATCAAATTTACATGGTTGTCGGCAGGG
AAAGACTCCCCGTCCGATCACCCCGATCGAATACACCCACCACACAAAAC
ACCGAACTCTACACAAACACCCTACCCTCCTCCTTCGCCCTTGGAAGGGA
TCTATTGCTTGGCGGAGGTCCCAGGTTCTTGCAAATATTTATCCGCGGCC
TTCTACATAAAGCTAATCGTAGCTCCTTCAATATCAAGCGTTTCCCCCAT
TAGTATTTACAGCAGTGTTGTGTCATTTCTCTTCTCGACCTGGTCCTCCC
CTCCCCCCCCTTTACAGAGCAAACTCGAGTCCTGGAGATCGGATTCGGAT
GCGGGTACTCTGCCGACCGTATTCAGGAGCTGAGGCCACGATCGCACACT
GTGGTGGAGCCCGATCCGGTGGTGCTCGAGCGGCTGAGGGCGTGGGCGGA
GACCCGCCCGGGGGTGACCATCGTAGAGGGGTTCTGGCAGACTGCGCTGC
CGGCGCTGGGACGATTCGACGGGATTTTTTTCGACGACTTTCCGGTGAGT
CGAGTCGGTCCACTGTGTACTGTATTAAAGAGAGGGATAAAACAGCCGTA
CCTCCATACTTCCTCAGGCATAAAGTACACCCTAACCCTCAATAAGCATT
GGTGGCCAATATGACTTAATTTAATCGTCGTTGAATTTAGAAGGAAAACT
GTTAAAAGAGAAAAAGAAAGAAAGGAAAAGAAAAAGAAAAAAACGGCAGC
AGTAAGACACCAAAAATTAAAATGATACTATTAATAGCGAAGAACAGTAT
GCGTAAAAAATGTCAAAAAGGAAAAATACCTAGAAAATATGCAAGTGGAG
GACAACTTTCTGTGCTTTTTTGTCTTGTTTTGTTTTTTCTTCCCTCAAGT
GAAGGGTTATTCACATGTCATGTACACTAAGTATCTCGCTGATGTCCGCG
TCGACGTTGAGGGAGAAGGGTCTAGACGCGTTTGTATTTTTCTTCAAACA
ACAGTAAAATCCAAACGGTCCGGGGGTATGGTCGGCCCTCCAAGACTCTG
TACTACGGCAGTTGCGGATGCTGACTCACCTACCATATGGTGGTAAATCT
ACGGAGCTGTATATTAATATTATATTATGCTTGAAACATTTGCGTCCATT
CGTTCGACCTTTGCTACTTAGTATGTGTAGCTCTATACTTTATTGCTCTT
GTCATTGACCTCTCCGGGTCCAGGGCGGGAAGATTTGCGGCAGAGGAGGG
GGGATGCGAGCGGAGAAAGTGGAAACCCCGTATTGTATTTTCATAATGAA
ATGAACCCCTTTATTATCATAATGAGATAAATCCCCCTGTTTTCATGATG
AAATGAACCCCCTTGTCCTCCCCCAATGAAATGAACAACAGTGTTCGAAT
GTTGACCGTGTGAAACATTGTCTGTGCTGTATTACACCATCCCATTTACT
CTGTCATCGCACAGAAGAAAAGACAGACAACTGCTGTACAGTACAGTAGT
ACACTGCTGTAGACTAACGATCATGTTTCGTGATCGAGCGTTTTTTAGAG
ACAAGATTATTGGAGGAGTAGTCCTTGGGGGCGGGGAAGCAGTATGCCGG
TAGAGTTACACATCGTAGAATAGCGATGACCGTCTTACAAAGACTGACGA
TTTACTCTTGATCTCTCTTTTCAAGATAACGGCCTCTGATACAGTATATC
TAACCGATTCTACATATCCCTTTTTTTATTTATTATGAAGACGAAGTACA
GTAGCAGTGTATGTACAGACAGTATTAACAGTTGAACCCTATTCTTGCGA
TGCGGGGGACCTCCCAACACATCAGTGTTCTCAGCACGGAGGAGCGCCCC
CGATAGGCAACGGCTTGGAGGCAAAGCCTTTTGATAGCTCTGCCATTACG
AAGTGCCGAAGTGCCTGTGTTAATTGTTGGCTAGTAAAAGCCACGGCTTC
GCCCCCGGACAGACAAACGCGTGCATTCATCTCTCGCGCCCGCGTACCCT
ACAAAACGCGTACCTTACGCGCGCGAAAAAAATAAACTCGTATCCACGTG
AACTGTCCCTCAGGCTGGCGTACATCGCCCGAAGCGCGCACGTAAATCGT
TGTCCTCATTGTCCGCGACAGCATCCCCCAACTCCAAGCACTCTGTACCC
CTCGCGTGCACGTACACCGTGTGGATGGTGCCCACACACATCATCCACCA
GACGCGCGTTCATTGACCTTTAGCGAGCACGCAAACCATTCCCAGGACGC
ATGCTAATCGCTCCGCCCGCGGAACGAAAGGAAGCGACAGTCCATTGCTC
GCGCCCGCGTTCCCTGCGAAAATAGGCATATGTCAAAGCGCGGGCAAACT
TCACTTGGAAGATCAAGATCGCGCACTCCGTCCCGGGCGCGCATATGCCT
AATCGCGGGTACCTACCTCCCACGCCCTCCGCACGCACGTCAAACTGTCC
ACTCTCAGACAGCCGCTTGGGTGGCGTACATGACGGCCCCTCACTCGCAC
ACCCGGCTATGCTCGTGCCTGATGACCGCGGCGCGCAGCGCCTCAAGGCC
ACATGGTGCAGGGATTGTTCGAATAAAGTTGTTTGTGGTCAGCCATAGAT
ATGCTTGTGTCCGTTCTTAAAAAAGAGCCACGGCACATGGCTCATGTAGC
TCTTGAGTCGCTCGTTTGCTGCCTGTGCCCAAGGGCCGCGTCGCGTGGAT
TGTATGTTGCTGAGTCGGCCATTTCCTCTTCGTCCCCTAGGGCCTCAGCT
TTTTGGTGCAAATTTCGCTCAAAATTAGGCACGGATACGGGAGTGCTCTT
GCTCAGGGGTCGCGGCGCAAAACGTGTGCGGTGTAAATCGCTCATTACTC
ATCAGTGTTCCCAGATGCCACAGCGCATAAGTTGCTAGGGTGCAAAATCG
CTGACGACTAGGGCACGGATTTGCACGTGCCCGTGATCAAGAGAGCCGCG
GCACAAGGCTCACGACGTATATCAGTCGCTCATTCATCATCAGTTCCCAA
CGGCTGCAGCGCATCAGTTTTTTGGCGCAGGGTTGATCAAGGTTAGACAC
GGATTTGAACGTTCCCGTGCTCAAGGGCCGCCGTGCAAGGCTTGTGAGGT
GTAAATCGCTAATTAGTTACCAGTTGCAAAGAGCCGCGGTGCACATTACA
CCCAAGGTCACTTATGGCCATACATACATACATAACATACATGGCAGGGC
AGGGCAGGCATGAGTACGTACCCGTGCTCAAGGGCCGCAGTACATACCTT
ACTAGATCCAAGGCAGCTTATGGCCAGGCAAACACATCCGTGTACTTGTG
CTTAAGGGCCGCGGCGCAAGACTTACGTGGTGTATGTATGTATGTATGTA
TGTATGGTCATCACATATAGCAGAGTATGGATCAACCGGGTAAGGTTGCC
AATCCTGCTCGTGGTCAGCTGAACAGGGAAAAATATTTTTTCCTGTCCCC
GTTcGCGCCTCCTGAGAATTTGGCCTCGCGAGACGGGTTTAGCCGTCCCG
TCCCGCGTCAGCCTGCTCATCTCCATAATCAGGCTGAATCTGGCGCTTAC
TTACGAGATTCCTCCCGAGATTCCTCCCCGAGTTTATCGGGTCACGCAGT
TGCGTACCGATGGCGTTCACTGCCGAGAGTTCGCCGGCACAGGGCCAATA
AACCTCAAGGTAGTTCCGAACGGGTGCTGCCTTGGCAGGTCACCATGGAT
CCATTAATACGCGCCTCTCTTCCCCACACCCACTATTGGTATGAAGTGAT
TATAGCATGTTGAAAGTACCGGCGGAGTAAGTTATTACTCGTGGCTTTCA
GTTCCCAAGGTGCACAGTTCATGCCTTGTCAGGTCCACGGTCGGTTATGG
TCAGGCACAGATACGCACGTACCCGTGCCCTCTAAGAGCAGCAGCAGCAG
CGCCGAGACACTCAATAATTAGGCCCGAGGGCCGCAGCGTTTGAAAAGTC
TGGTGCTGCTGGGCAGTTCATGGCCAGGCACGAATACACACATGTCCATC
GTATGAGGGCCTCCACGGCCACGGTGCACGGCGTGTTTCGAGCTTGACCT
TATTCATGGGTACCATATGTCGCCCTTGTACGTAGGAAACTTGTTGCAAT
GGTGTCAAATCAATACTGTCGAGGAGGACTCGTGCTTTGCAAAGTCGCTC
TTCCGGCCGGCTGGTGTCAACACTGTTTGTAGTCCACTCGCATTTGTTGG
AGTGAGGTTGAAGAACAACGCTTTTTCCCATCTTGTTCGTTCATGTCTGA
AGTGGCTGGGCTTATTGCGGTGCGGTGCGTTCGTTTGGCTGTCGCTGGAT
TGTACCCCTGTTGTCACCAGAAGTCCGTCAAGAGACCCTCAGCAATGTCC
CTGCATGGCGATTAATGTAAGTGCACAGCAGTATAACGGTGGGCTTCTCC
CCGATATTATATACTGTTGACCCAATGTTATTACCATCGGGGAACCCGTT
TAAATGCCATGAAGAGGTGTTTGTACTTGCAGCTTACTATGTTCCCACCT
AAACGTTTTGACATTTTCCCCCCTGACTGGGTTATAGTATGCTCAGAAGG
TCTAGGCACGTTCTAATTTTTCTTTAAAGGCCCGTCGTTTGGGATGGTTT
GTTTCCTTGCACCCCCGGATTTCCTTGACTGGCCGGTTTGGTAAGCCGAC
AGGTCGCGATAGGTGGCAGCCATCGTTGTTGTTGTTTTTATAGCTGGTGA
AGACCCCCGCGGGCGCGCTTATTCGGTGGGCTATTAGGGTTGGAGGTTGG
AGGTGCGCTCTGGCATAGTCTTTGTTTGCTGGATGTTAATGGCGTGAAGT
AGGTGGTGGCTGACTGGTGATTTTTTGTTGTTGGTTGTTGATGAGTTGGT
TTTCGTCCCGAAAATTCATTACCAACTGTACATTAGTATCTGCGGTTGCA
GTGATTCGACTGTTGGGAGTTGTTGGAGAGCAGGGTGTCTTTTCCATCCA
TTGTTGGAGTCGGTAATAGTGGTGTTTTTTTACTGCTGGAGTTGTTGATG
CGATGCATTGCCATCTGTTGGTTGCTAGTTGTTTTGGTGTACGCTGTTTG
AGGTGGGACGTGGTGGATTACCTTTTCAACAAAAATAGTACCGTGGGACT
GTCGGGTTTTGGGTCAATGAAACGTCCATTTCTTTCAACGCGGTGTAACC
GCTCGAGGGCCGAGACCACCGCTGCTATACGAAGTTTGTACATGTGAGCT
TTTCGAGTTAGAGGATACGGTCTTTCGCTGCCTCGCTTGGTGCCTCTTGG
CGTGTAACGGTTATTATCTAACGATACTATATTATAAATAGGCCTATGGA
ATAGTGTGGTGTGTCAACGCCTCCGCAAACTAAAGGGAGCCAAAGTCGAG
TTTATCGAGAGGGAAAATAAAGTATGCCAATTTCAGGTGGATATTGCGGA
GTATTATCCTTCCTCATACGGGGAACTGCAATATGCTGCTGTTGTATAGT
AGTTCATCGTACAAGGCGTTCATCTCCACCTCTCGGGGTATACGGAACGC
GTGATTATCATCTCCAGTGCCAGCATGAAATATTTCATCATCAAATACAT
TAGCGTACTGTTCTTTCAATATGCCCACTTCATACCATTAGTGGGTGTGG
GAAAGAGAGGTGCGCATATTAATTGGTCCATGGTGACCTGCCAAGGCAGC
ACTCGTTCGGAACTACGTAGAGGTTTACTGGCCCTGTGCCGGCGGACTCT
CGGCAGTGAACGCTATCGGTATGCAACTGCGTGACCCGATAAACTCGGGA
CTGACCCGATGGCGTACGGCGGTTTAAATTAATAAATGGACGCCGCCGCG
GAACTCGGGAGATATCCCGAAGGTAGGCACCAGATTCAGCCTGAGTATGG
AGATGAGCAGGCTGACGCGGGACGAGACTGTCGAACCCGCCTCGCGAGAC
CAAATTCTCGGGCGCGAACGGGGACAGGGGAATATTCATTTTCCCCGTTC
AGCTGACCACGAGCAGGATCGGCAACCTTACGCGGTTGATCCTTACCCTT
GCAATATGCGATGATCATACATACATACGATCCCCCCAATATGTGTACCC
ATATAAACTCATGTCAAACGAGACCATTCTCTGTTCGCATGCAGTCTATC
TAGGGTGCAGGGAAAAATCGCCTCGTGCCCCCGTTTTTTGTCCGTGTGTT
TTTATTTTTTATATTTTGTACAACAGCTTCCCGGGACGCCTGATTCGTCG
GACCTGAGAGGCCCCGCGTCGAGATGGCACGCTTTCATCGACCTCTGCGT
CGCCCATCACCTTTCCTTGGGAGGGCGTATTACCGGGTGAGCTCGTGGGG
CGGATGGCAGAGGGTAGGAAGGAGCGCTGTCGGAGTTTTTTTTCCTTCTT
ATTTTTTCTTCTTATTTTCATAGCCCTTTTCAAACAACTGGACGGAAAAA
TATTCGCAGAACGCGCGGGCATCCAGATACTTGACTTCCGTGTTGCTAAA
AAGCAGAAGTCGTTCCTAGCTTACCCCCCCCCCCCCCCCTCCCCTCCTTC
CGTTCGGTGTAAAAATATTTCGTCGCGTGGAAACCCAAACCCCTTTTTCT
AAGGTGCTGCTTGAAGGGAATTCTATAAAACAAATGAAACCGAAAAGTGT
ATTTAGATAAATAAAAAGTACCATACAATATTGAAGTTGATCGTATTTTC
AACACATTCTTTTAACCAAAGATTAAATCGATCCAAATAGAAACGCAATG
TCCATATAACTAAAAACATGGTAGCAATCATTACATGAAAACCATGAAAA
CCATGAAAACCTGTAGTAGCCATAAAAAACATTGAATCCTAAACGCTTTA
TTTTGGACGCAATAGAATGAGCGCGCGATGTTTTTTGTTGTTGTTTTTTG
TTGTTGTTTTTTTACCAACGCAAGCGATTTTGCAGTATCGATAACAAATA
CTGTGTAACAGACGATACTCAACTCCTACGCACGTGCCTCCTTTTGCCCC
CAAAAAACATTTAATAAACTCTCTCGCACACACACACACACACAATCCAG
GTACCTGGCGCGCCCGCTTGACCTGAATCGCCCAGACTGCGACGAGGCCA
CCCTTACACCCTTCCCGGTCAAAGTCCCACCCAACTGCCCCTACTTTCCA
CACGGCGAGGCCTACATCCCATTGGTCACGAGGAGGGCCAACCTTGGCGT
GTCCGAAGCGGGGTTTGGGTTAGCGACGGCCCCGGGGGGAGCAACAAGCG
TCCCGCCTTCCCTGGTTATGGAACACCCCGACGCGGCGGTGGGGGGTGCA
GTCGGGTCGCGAAAGCGGCAGAAACGACTTGCTCTAGAGGCGCTTGTCAA
GGAGAGCTTGGGATTGAGCGATGTCTTGAATTGATGATGAAAAGTATAAG
GCGGCACAGTGGTTTTTAACTACATCAAACTAAAATAGTAGCGTTCCTCT
GCCTGTGGTGTGATTTTTTTTTTTCCGGGCCTCAACGTGTATAATATATA
ATATATACAGTGTAAATTGTAAATCGTGTAATGCTCTCTTCTTTCCTTTT
ATACAGTATTACATAGTGTATCGTAGTGTCTGACGATGTTTTGTCTGCTG
GGGTTACTACACTGTTCGAACGCGCGCACTGATTAATTGATTCGCGTATG
TAAAGTCTCTCTTCTGTTTTAAAGCCATATTACTCTTGAAACCCAAGCCG
CGCGGCGGTGCGGCGGCTTCGGGTTATGACAACAAAATATGAGCGACGAC
CCCACCGCCGGCGCAGGCGTTGGAAAGAAAAAAAAGGTGCCGCACCACTG
A
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1160:76855..85105+

>mRNA_F-serratus_M_contig1160.1331.1 ID=mRNA_F-serratus_M_contig1160.1331.1|Name=mRNA_F-serratus_M_contig1160.1331.1|organism=Fucus serratus male|type=CDS|length=1770bp|location=Sequence derived from alignment at F-serratus_M_contig1160:76855..85105+ (Fucus serratus male)
ATGGCGCGACTGCGCTTTGGTGTCGACGACCTGGGAAAGGAGATTCTTGA
GCTCGTTCCGACCGCGGCGGGCGCAGCCGATGGCAACGGTGACGTAGAGG
ATGGGCGCTGCTGCCTCGAGGCTGACAAGCCTTACAAGGGGTCAAACACC
ATTGTAATGATGGAGTGGGAGAAGCCTTACATGCGCGCGCTCGTGGACGC
CCTGTCCATCACGGATGGCGCGACTGCGCTTTGGTGTCGACGACCTGGGA
AAGGAGATTCTTGAGCTCGTTCCGACCGCGGCGGGCGCAGCCGATGGCAA
CGGTGACGTAGAGGATGGGCGCTGCTGCCTCGAGGCTGACAAGCCTTACA
AGGGGTCAAACACCATTGTAATGATGGAGTGGGAGAAGCCTTACATGCGC
GCGCTCGTGGACGCCCTGTCCATCACGGAGCAAACTCGAGTCCTGGAGAT
CGGATTCGGATGCGGGTACTCTGCCGACCGTATTCAGGAGCTGAGGCCAC
GATCGCACACTGTGGTGGAGCCCGATCCGGTGGTGCTCGAGCGGCTGAGG
GCGTGGGCGGAGACCCGCCCGGGGGTGACCATCGTAGAGGGGTTCTGGCA
GACTGCGCTGCCGGCGCTGGGACGATTCGACGGGATTTTTTTCGACGACT
TTCCGAGCAAACTCGAGTCCTGGAGATCGGATTCGGATGCGGGTACTCTG
CCGACCGTATTCAGGAGCTGAGGCCACGATCGCACACTGTGGTGGAGCCC
GATCCGGTGGTGCTCGAGCGGCTGAGGGCGTGGGCGGAGACCCGCCCGGG
GGTGACCATCGTAGAGGGGTTCTGGCAGACTGCGCTGCCGGCGCTGGGAC
GATTCGACGGGATTTTTTTCGACGACTTTCCGCTTCCCGGGACGCCTGAT
TCGTCGGACCTGAGAGGCCCCGCGTCGAGATGGCACGCTTTCATCGACCT
CTGCGTCGCCCATCACCTTTCCTTGGGAGGGCGTATTACCGGCTTCCCGG
GACGCCTGATTCGTCGGACCTGAGAGGCCCCGCGTCGAGATGGCACGCTT
TCATCGACCTCTGCGTCGCCCATCACCTTTCCTTGGGAGGGCGTATTACC
GGGTACCTGGCGCGCCCGCTTGACCTGAATCGCCCAGACTGCGACGAGGC
CACCCTTACACCCTTCCCGGTCAAAGTCCCACCCAACTGCCCCTACTTTC
CACACGGCGAGGCCTACATCCCATTGGTCACGAGGAGGGCCAACCTTGGC
GTGTCCGAAGCGGGGTTTGGGTTAGCGACGGCCCCGGGGGGAGCAACAAG
CGTCCCGCCTTCCCTGGTTATGGAACACCCCGACGCGGCGGTGGGGGGTG
CAGTCGGGTCGCGAAAGCGGCAGAAACGACTTGCTCTAGAGGCGCTTGTC
AAGGAGAGCTTGGGATTGAGCGATGTCTTGAATTGAGTACCTGGCGCGCC
CGCTTGACCTGAATCGCCCAGACTGCGACGAGGCCACCCTTACACCCTTC
CCGGTCAAAGTCCCACCCAACTGCCCCTACTTTCCACACGGCGAGGCCTA
CATCCCATTGGTCACGAGGAGGGCCAACCTTGGCGTGTCCGAAGCGGGGT
TTGGGTTAGCGACGGCCCCGGGGGGAGCAACAAGCGTCCCGCCTTCCCTG
GTTATGGAACACCCCGACGCGGCGGTGGGGGGTGCAGTCGGGTCGCGAAA
GCGGCAGAAACGACTTGCTCTAGAGGCGCTTGTCAAGGAGAGCTTGGGAT
TGAGCGATGTCTTGAATTGA
back to top