mRNA_F-serratus_M_contig116.1324.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig116.1324.1
Unique NamemRNA_F-serratus_M_contig116.1324.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig116.1324.1 vs. uniprot
Match: A0A6H5JSL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL4_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.170e-10
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 MKRAEDLPVDDVDGQAYLCYMVEHVVGWRNRCNAAINDVVEYIRRGNIPDIPNPSTSVKGST 186
            M+ A+ LPVD VDGQAYL YMV  VVGWR+RC  A+ D   YI+ G+  +    +T++KG T
Sbjct:  974 MRNADSLPVDGVDGQAYLNYMVVQVVGWRDRCEDAVKDFQAYIQGGDTAE----ATAMKGGT 1031
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BLAST of mRNA_F-serratus_M_contig116.1324.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 7.000e-9
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 MKRAEDLPVDDVDGQAYLCYMVEHVVGWRNRCNAAINDVVEYIRRG 138
            M+ A+ LPVD VDGQAYL YMV+ VVGWR+RC  A+ +   YI+ G
Sbjct: 1111 MRHADSLPVDGVDGQAYLNYMVDQVVGWRDRCEDAVKEFQAYIQGG 1156
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig116.1324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSL4_9PHAE3.170e-1051.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN51_ECTSI7.000e-958.70Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig116contigF-serratus_M_contig116:647354..648751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog2880.D8LN51
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K07117,ko:K11423,ko:K11424,ko:K11728
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko05202,map00310,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000803,GO:0000805,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009987,GO:0010452,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018992,GO:0019222,GO:0019538,GO:0022414,GO:0030849,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0036211,GO:0040029,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046975,GO:0048519,GO:0048856,GO:0050789,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1632@1,KOG1632@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons3
Model size359
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig116.1324.1prot_F-serratus_M_contig116.1324.1Fucus serratus malepolypeptideF-serratus_M_contig116 647354..648751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929055.5960405-CDS-F-serratus_M_contig116:647353..6475401622929055.5960405-CDS-F-serratus_M_contig116:647353..647540Fucus serratus maleCDSF-serratus_M_contig116 647354..647540 -
1690962684.8566234-CDS-F-serratus_M_contig116:647353..6475401690962684.8566234-CDS-F-serratus_M_contig116:647353..647540Fucus serratus maleCDSF-serratus_M_contig116 647354..647540 -
1622929055.6134243-CDS-F-serratus_M_contig116:648005..6481191622929055.6134243-CDS-F-serratus_M_contig116:648005..648119Fucus serratus maleCDSF-serratus_M_contig116 648006..648119 -
1690962684.8699806-CDS-F-serratus_M_contig116:648005..6481191690962684.8699806-CDS-F-serratus_M_contig116:648005..648119Fucus serratus maleCDSF-serratus_M_contig116 648006..648119 -
1622929055.626016-CDS-F-serratus_M_contig116:648695..6487511622929055.626016-CDS-F-serratus_M_contig116:648695..648751Fucus serratus maleCDSF-serratus_M_contig116 648696..648751 -
1690962684.8788278-CDS-F-serratus_M_contig116:648695..6487511690962684.8788278-CDS-F-serratus_M_contig116:648695..648751Fucus serratus maleCDSF-serratus_M_contig116 648696..648751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig116.1324.1

>prot_F-serratus_M_contig116.1324.1 ID=prot_F-serratus_M_contig116.1324.1|Name=mRNA_F-serratus_M_contig116.1324.1|organism=Fucus serratus male|type=polypeptide|length=119bp
MKRAEDLPVDDVDGQAYLCYMVEHVVGWRNRCNAAINDVVEYIRRGNIPD
IPNPSTSVKGSTDSCNLTAASDHDHGDHDGHGAKDADGATTMGALTPPQP
DCATPEPEPEAGGNCIYNN
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mRNA from alignment at F-serratus_M_contig116:647354..648751-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig116.1324.1 ID=mRNA_F-serratus_M_contig116.1324.1|Name=mRNA_F-serratus_M_contig116.1324.1|organism=Fucus serratus male|type=mRNA|length=1398bp|location=Sequence derived from alignment at F-serratus_M_contig116:647354..648751- (Fucus serratus male)
ATGAAGCGTGCTGAGGATCTTCCCGTGGATGACGTGGACGGTCAGGCGTA
CCTTTGGTGGGTGCAAGCGGTTGCTCTCTTTTGCTGCGAATACCGCGCGT
CTGGACTCGTCTGGACTCTCTTCAGAACTATTGACTGCCGTTTGGATAAT
CATGAAGCTACTCTGGCTATTTTATATTGACGTGCTTTTGGTGGATGGGG
TGCTATCGATGCAATTCTAAAAGCTGTCGCTGTCGACCGCCGTCATTATA
CTATAATGATACTGTATCAATAGTACACACTCGATATATACACTAGTACA
TAGTACATAGTTCATACCTGGTAGTTCATAGTACCGTTGAGCTCTTTCCG
CGCCATCCTACTGTACCTAGTACCTAGTACCTAGTAGTACCTTATTAAAT
AGTACCTTATTAAATAGTAATTTTGTAGCAAGAAGTGGATAACGCTCAGA
AATCTACTGCGAGAAGACCGGGTCGACCTACACGTGGGAATGCATGCTCC
TTCTGAACCATATCAGGGTAAAGTCAGTAGATACTTTTTGCGCCGTTGCC
AAACTTTTTGCCGCGCAAACGCCCTGTACTGTAATTAACGTACTACAATG
CTGGGTACCTGGTACTACATGTCTAACCGCAGCTACATGGTGGAGCACGT
GGTGGGCTGGAGAAACCGTTGTAACGCTGCCATCAACGACGTTGTGGAAT
ACATCCGTCGGGGTAACATCCCGGATATCCCCAACCCTTCAACAAGGTGG
GCCTGGTGTCGCACGTGGTACAATGTGCCCCCCCCGCACTGCCCACACTG
TCATTTTATTTATTTATTATTTTTCGCCTTGTCAGTTGGACGGTTTAAGC
GTTGTCGCCATTTTGGCACTTTCTCGTGCAATGCTTTTTTCATTGAGAGA
CGCCACTATTAATAGCCGAGATTTGGGTTTAAGGGTGTTTCTTGTTCGAG
TTGGGTTGAGTCCGCATCAAGTACGGGATCAGGCATTGAATCTTTATTTT
ATAAAACAAAGTAACTGGCATGTATATTATGGTATATGGTATATGATAGT
TGATGCTACTAACAGGAAGTTAGAGTGGATCCTTCTACGAAGTGGTGAAA
ACACCCTCTGTATGAAGGTTCATGAGGGCTTAGGCACGCTGTCGCCCTGC
TTTTCCCACGGCCGGAAATATCCTGATTGTGCCGTTGATCATGTCGTTGA
TCATACCGCAGTGTCAAGGGTTCGACGGATTCCTGCAACCTCACCGCTGC
TTCTGACCATGACCATGGTGACCACGATGGCCACGGTGCCAAGGACGCTG
ACGGGGCCACTACAATGGGAGCATTGACCCCTCCCCAACCAGACTGCGCC
ACACCAGAACCAGAACCAGAAGCAGGAGGTAATTGCATCTACAACAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig116:647354..648751-

>mRNA_F-serratus_M_contig116.1324.1 ID=mRNA_F-serratus_M_contig116.1324.1|Name=mRNA_F-serratus_M_contig116.1324.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig116:647354..648751- (Fucus serratus male)
ATGAAGCGTGCTGAGGATCTTCCCGTGGATGACGTGGACGGTCAGGCGTA
CCTTTGATGAAGCGTGCTGAGGATCTTCCCGTGGATGACGTGGACGGTCA
GGCGTACCTTTGCTACATGGTGGAGCACGTGGTGGGCTGGAGAAACCGTT
GTAACGCTGCCATCAACGACGTTGTGGAATACATCCGTCGGGGTAACATC
CCGGATATCCCCAACCCTTCAACAAGCTACATGGTGGAGCACGTGGTGGG
CTGGAGAAACCGTTGTAACGCTGCCATCAACGACGTTGTGGAATACATCC
GTCGGGGTAACATCCCGGATATCCCCAACCCTTCAACAAGTGTCAAGGGT
TCGACGGATTCCTGCAACCTCACCGCTGCTTCTGACCATGACCATGGTGA
CCACGATGGCCACGGTGCCAAGGACGCTGACGGGGCCACTACAATGGGAG
CATTGACCCCTCCCCAACCAGACTGCGCCACACCAGAACCAGAACCAGAA
GCAGGAGGTAATTGCATCTACAACAACTGTCAAGGGTTCGACGGATTCCT
GCAACCTCACCGCTGCTTCTGACCATGACCATGGTGACCACGATGGCCAC
GGTGCCAAGGACGCTGACGGGGCCACTACAATGGGAGCATTGACCCCTCC
CCAACCAGACTGCGCCACACCAGAACCAGAACCAGAAGCAGGAGGTAATT
GCATCTACAACAAC
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