mRNA_F-serratus_M_contig116.1322.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig116.1322.1
Unique NamemRNA_F-serratus_M_contig116.1322.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig116.1322.1 vs. uniprot
Match: A0A6H5JSX4_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX4_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 1.970e-97
Identity = 150/259 (57.92%), Postives = 200/259 (77.22%), Query Frame = 1 
Query:    1 VEFNDLVVVDTPGMPNKDPHKTVAYFDAVVQAMRREDSLSTLLFLVKQEVACPSEFKQYSVLLEQFNHIPCSKLMVCRQLALSRKSKKTEAEKRYEGAKYVERVLEASRLNMPLMLLTDGYGNEAFQQVEKIVNFVLRSERVRFD-APTCRTSEELKHFVSRLADKATRLETLKQDVEEAEMSLWNRTLWMASQVVPLAYLSVASVGAVFLWTGPYVKREQETCTELRVAIMKKKKELERGVVDDEGLQTARNVLSILE 774
            VE+ DLVV+DTPG P  DP  T   FDA+V+A+RRE SLSTL+FLV+QE   P+EF+ Y+VLL Q NH+PCSKL+VCRQ ALSR+ K+TE E+R+ GA++VE VL+ S LNMPL+LL DGYG+E+ +QV++I  FV RSER R D   + RT  EL+ F ++LAD A+RL T++++VE+ E SLW+R+LWMA QVVPLAY+SV+S GA  +WTGPYVKREQE C  LR  +  KK+E+E  +VD++ L+ A+ VL+ L+
Sbjct:   78 VEWADLVVIDTPGFPGHDPKTTSKNFDALVKALRREGSLSTLIFLVQQEEVSPTEFRDYAVLLRQLNHLPCSKLIVCRQAALSRRHKRTEEERRHSGAQFVEGVLDDSGLNMPLVLLNDGYGSESIKQVDEIRRFVGRSERARLDLVASLRTFAELRSFAAKLADPASRLRTVREEVEQMEASLWHRSLWMACQVVPLAYISVSSPGAGCIWTGPYVKREQEACARLRKELNDKKEEIELDIVDEQELRAAQGVLAFLD 336
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BLAST of mRNA_F-serratus_M_contig116.1322.1 vs. uniprot
Match: D8LN49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN49_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 7.620e-53
Identity = 93/167 (55.69%), Postives = 125/167 (74.85%), Query Frame = 1 
Query:  277 KRYEGAKYVERVLEASRLNMPLMLLTDGYGNEAFQQVEKIVNFVLRSERVRFDA-PTCRTSEELKHFVSRLADKATRLETLKQDVEEAEMSLWNRTLWMASQVVPLAYLSVASVGAVFLWTGPYVKREQETCTELRVAIMKKKKELERGVVDDEGLQTARNVLSILE 774
            KR+ GA++VE VLE S LNMPL+LL DGYG+E+F+QV++I  FV RSER R D   + RT  EL+ F ++LAD A+RL TL+++VE+ E SLW+R+LWMA  VVPLAY+SV+S GA  +WTGPYVKREQE C  LR  +  KK+E+E  +VD++ L  A+ V + L+
Sbjct:   26 KRHAGAQFVEGVLEDSGLNMPLVLLNDGYGSESFKQVDEIRRFVGRSERARLDPLASPRTFAELRSFAAKLADPASRLRTLREEVEQMEASLWHRSLWMACHVVPLAYISVSSPGAGCIWTGPYVKREQEACARLRKELNDKKEEIELDIVDEQELCAAQGVSAFLD 192
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig116.1322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSX4_9PHAE1.970e-9757.92G domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
D8LN49_ECTSI7.620e-5355.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig116contigF-serratus_M_contig116:579639..581805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_003480.1
Exons3
Model size797
Cds size795
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig116.1322.1prot_F-serratus_M_contig116.1322.1Fucus serratus malepolypeptideF-serratus_M_contig116 579639..581805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.701561-CDS-F-serratus_M_contig116:579638..5800491622929060.701561-CDS-F-serratus_M_contig116:579638..580049Fucus serratus maleCDSF-serratus_M_contig116 579639..580049 -
1690962686.9666162-CDS-F-serratus_M_contig116:579638..5800491690962686.9666162-CDS-F-serratus_M_contig116:579638..580049Fucus serratus maleCDSF-serratus_M_contig116 579639..580049 -
1622929060.717393-CDS-F-serratus_M_contig116:580258..5803611622929060.717393-CDS-F-serratus_M_contig116:580258..580361Fucus serratus maleCDSF-serratus_M_contig116 580259..580361 -
1690962686.9774644-CDS-F-serratus_M_contig116:580258..5803611690962686.9774644-CDS-F-serratus_M_contig116:580258..580361Fucus serratus maleCDSF-serratus_M_contig116 580259..580361 -
1622929060.7313669-CDS-F-serratus_M_contig116:581524..5818051622929060.7313669-CDS-F-serratus_M_contig116:581524..581805Fucus serratus maleCDSF-serratus_M_contig116 581525..581805 -
1690962686.9871109-CDS-F-serratus_M_contig116:581524..5818051690962686.9871109-CDS-F-serratus_M_contig116:581524..581805Fucus serratus maleCDSF-serratus_M_contig116 581525..581805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig116.1322.1

>prot_F-serratus_M_contig116.1322.1 ID=prot_F-serratus_M_contig116.1322.1|Name=mRNA_F-serratus_M_contig116.1322.1|organism=Fucus serratus male|type=polypeptide|length=265bp
VEFNDLVVVDTPGMPNKDPHKTVAYFDAVVQAMRREDSLSTLLFLVKQEV
ACPSEFKQYSVLLEQFNHIPCSKLMVCRQLALSRKSKKTEAEKRYEGAKY
VERVLEASRLNMPLMLLTDGYGNEAFQQVEKIVNFVLRSERVRFDAPTCR
TSEELKHFVSRLADKATRLETLKQDVEEAEMSLWNRTLWMASQVVPLAYL
SVASVGAVFLWTGPYVKREQETCTELRVAIMKKKKELERGVVDDEGLQTA
RNVLSILEDFSHNP*
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mRNA from alignment at F-serratus_M_contig116:579639..581805-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig116.1322.1 ID=mRNA_F-serratus_M_contig116.1322.1|Name=mRNA_F-serratus_M_contig116.1322.1|organism=Fucus serratus male|type=mRNA|length=2167bp|location=Sequence derived from alignment at F-serratus_M_contig116:579639..581805- (Fucus serratus male)
GTGGAGTTTAACGACCTGGTTGTGGTCGACACGCCTGGAATGCCCAACAA
AGATCCCCACAAGACCGTCGCCTACTTCGATGCCGTGGTGCAGGCGATGA
GGAGGGAGGACAGCTTGAGCACTCTATTATTTCTGGTGAAGCAGGAAGTT
GCTTGCCCCTCAGAGTTTAAACAATACTCTGTTCTACTGGAGCAGTTCAA
TCACATTCCCTGCTCGAAGCTGATGGTTTGTAGACAGCTGGCGTTGAGCA
GGAAAAGCAAGAAGACCGAGGCGGAAAAGAGGTGGGCCTTTCGATTCTTT
GCAGGGCAGGGCACATATCAATAGCACCGCAATAAAACAGCCATGCGCCG
ATTGTTCTGACCCCAAACTCCGCCTGTGTTTCGCTGAGCGGGGGCGGGGT
GGGAGGGGGGAGTTGGCCAGGCTGGGAGAGTAACATGGTATTCAATGAAA
ACGCTTTGGGCCCTACGAAATGAAAGCACTCCACCCAGAAATCGTTCCTT
CCTTTCTTTTTCTACTGAAAACGCGATCGCTCCGAGCGTGATTGAGATAA
CCTCACAGCAGCTGATCGAAAAATTGAAATGTTCTACCTGGTAGTAGTCT
CTGTCCAAAGACAACCTCTGGTGCTAGAGCAGCGTTTTCATACTACTTTT
TCGTCAAACTTTTCTCCTGTTGACGGATGTTCTTGCTTTCCTCGAGCGTT
CATGAACCGTCAACCCTCACCCTCTTTCATGGCATTATACCACTTGCTCT
CAGGTTAAAAAACAATTTCTACACTTTATCGCGACTTCGAATGCTTTAAA
GTCCCTTCACATTTTTTTCTGTCCAGTCTTTCACCTCACCTTCTCACCTC
CATCCCTCCCCCTCGCGCCTTGGAGTACACTAGTACACTAGTACACTATA
CTACACTATACTATTATAGTACACTACACTAGTACACTACACTATTATAG
TTCACTATACTATAATAGTACACTATACTAGTATGTATGGTCACACATAT
AGCAAGAGTATAGATCAACCTGGTAAGGCTGCAAATCCTGCTCGTGGTCA
GCTGAACAGGGAAAATAATATTCCTACCTAGTACACTACATTAACGATCA
CCCGCCGGGGTAACCGTTGAGCGACTGTGCGTACGATCACCCCCGGCCCC
AGAAAACTTGAGGCACGTTTACCAGTGTGTAAATTGTCTATTAACAGGGC
AAAGATACACGCGTTCATCCCAGGCGCGGCGCACGATTACCTCCCCCGTG
AAAACCACGTTGCGCCAGGAGGCAGCTATTCGTATCAACCTACCTAGAGT
GGTTTTTGCTTTGGTTACGCCAAGGATGTCGACCTAACACTACACCTCTA
TGTGACCTTTATTACGCTTAATATTTGTAATCGTTTTTTACACATGCTCG
AACCCCGCTCAACCTCGTTTGGACATGGACCTGCTTACCGAAAGATATGA
AGGTGCCAAATATGTGGAAAGGGTACTTGAAGCCAGCCGCTTGAACATGC
CCTTGATGCTACTAACAGACGGGTATGGCAACGAGGCTTTCCAACAGGTA
GGTGGACTAGGTAGAGATATTCCAACATTCATTTAAAGATCGCCTACCGC
AGGGTTGAAAAAGTTCCGACGTCATCCGAATGTCAGCCTGTGCGCGTTAC
ATTGCTAGTCTATTCGAGAGAACTTGCTTACTCGTAGGTGGTGCGTCTTA
AGTAAACGAACACACTGCATGTAAAAGTGCCCGCTGCTGCATCACTTTAT
CACAAGGTGGAGAAGATCGTGAACTTTGTGCTACGCTCCGAGCGGGTGCG
ATTTGACGCGCCCACGTGTCGGACATCGGAGGAGCTCAAGCATTTCGTGT
CCAGACTCGCGGACAAGGCCACTCGGCTGGAAACCCTGAAGCAGGACGTG
GAGGAAGCCGAGATGTCTCTGTGGAATCGCACGCTGTGGATGGCTTCTCA
AGTGGTCCCATTGGCGTACTTATCTGTGGCATCAGTCGGAGCGGTGTTTC
TGTGGACTGGGCCGTACGTAAAGCGGGAGCAGGAGACATGTACCGAGCTG
AGGGTTGCAATAATGAAGAAGAAGAAGGAACTCGAGAGAGGCGTTGTTGA
TGATGAGGGACTCCAGACTGCGCGAAACGTGTTGAGTATTCTTGAAGACT
TCTCTCACAATCCGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig116:579639..581805-

>mRNA_F-serratus_M_contig116.1322.1 ID=mRNA_F-serratus_M_contig116.1322.1|Name=mRNA_F-serratus_M_contig116.1322.1|organism=Fucus serratus male|type=CDS|length=1590bp|location=Sequence derived from alignment at F-serratus_M_contig116:579639..581805- (Fucus serratus male)
GTGGAGTTTAACGACCTGGTTGTGGTCGACACGCCTGGAATGCCCAACAA
AGATCCCCACAAGACCGTCGCCTACTTCGATGCCGTGGTGCAGGCGATGA
GGAGGGAGGACAGCTTGAGCACTCTATTATTTCTGGTGAAGCAGGAAGTT
GCTTGCCCCTCAGAGTTTAAACAATACTCTGTTCTACTGGAGCAGTTCAA
TCACATTCCCTGCTCGAAGCTGATGGTTTGTAGACAGCTGGCGTTGAGCA
GGAAAAGCAAGAAGACCGAGGCGGAAAAGAGGTGGAGTTTAACGACCTGG
TTGTGGTCGACACGCCTGGAATGCCCAACAAAGATCCCCACAAGACCGTC
GCCTACTTCGATGCCGTGGTGCAGGCGATGAGGAGGGAGGACAGCTTGAG
CACTCTATTATTTCTGGTGAAGCAGGAAGTTGCTTGCCCCTCAGAGTTTA
AACAATACTCTGTTCTACTGGAGCAGTTCAATCACATTCCCTGCTCGAAG
CTGATGGTTTGTAGACAGCTGGCGTTGAGCAGGAAAAGCAAGAAGACCGA
GGCGGAAAAGAGATATGAAGGTGCCAAATATGTGGAAAGGGTACTTGAAG
CCAGCCGCTTGAACATGCCCTTGATGCTACTAACAGACGGGTATGGCAAC
GAGGCTTTCCAACAGATATGAAGGTGCCAAATATGTGGAAAGGGTACTTG
AAGCCAGCCGCTTGAACATGCCCTTGATGCTACTAACAGACGGGTATGGC
AACGAGGCTTTCCAACAGGTGGAGAAGATCGTGAACTTTGTGCTACGCTC
CGAGCGGGTGCGATTTGACGCGCCCACGTGTCGGACATCGGAGGAGCTCA
AGCATTTCGTGTCCAGACTCGCGGACAAGGCCACTCGGCTGGAAACCCTG
AAGCAGGACGTGGAGGAAGCCGAGATGTCTCTGTGGAATCGCACGCTGTG
GATGGCTTCTCAAGTGGTCCCATTGGCGTACTTATCTGTGGCATCAGTCG
GAGCGGTGTTTCTGTGGACTGGGCCGTACGTAAAGCGGGAGCAGGAGACA
TGTACCGAGCTGAGGGTTGCAATAATGAAGAAGAAGAAGGAACTCGAGAG
AGGCGTTGTTGATGATGAGGGACTCCAGACTGCGCGAAACGTGTTGAGTA
TTCTTGAAGACTTCTCTCACAATCCGTGAGTGGAGAAGATCGTGAACTTT
GTGCTACGCTCCGAGCGGGTGCGATTTGACGCGCCCACGTGTCGGACATC
GGAGGAGCTCAAGCATTTCGTGTCCAGACTCGCGGACAAGGCCACTCGGC
TGGAAACCCTGAAGCAGGACGTGGAGGAAGCCGAGATGTCTCTGTGGAAT
CGCACGCTGTGGATGGCTTCTCAAGTGGTCCCATTGGCGTACTTATCTGT
GGCATCAGTCGGAGCGGTGTTTCTGTGGACTGGGCCGTACGTAAAGCGGG
AGCAGGAGACATGTACCGAGCTGAGGGTTGCAATAATGAAGAAGAAGAAG
GAACTCGAGAGAGGCGTTGTTGATGATGAGGGACTCCAGACTGCGCGAAA
CGTGTTGAGTATTCTTGAAGACTTCTCTCACAATCCGTGA
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