mRNA_F-serratus_M_contig116.1317.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig116.1317.1
Unique NamemRNA_F-serratus_M_contig116.1317.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig116.1317.1 vs. uniprot
Match: A0A6H5KQ40_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ40_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 5.760e-55
Identity = 85/122 (69.67%), Postives = 94/122 (77.05%), Query Frame = 1 
Query:    1 MTVAAPLGLRIENLRCDKGGEYSGQEFRTLCVGAGINIEYTATNTPQQNGVSERDGQTLAKIARCLMKDGDFPPFMWGELMFTATYLANRSPHSTLEGATPYSKMHNLEPDLTGLRAIGARA 366
            M VAA  G RIE +RCDKGGE +G EFR  C  + I +EY ATNTPQQ G SERDGQTLA + RCL+KDGDFPP MW +LM TA YL NRSPHS L GATPYSK+HN  PDL+GLR IGARA
Sbjct:    1 MCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGESERDGQTLAGVTRCLLKDGDFPPSMWWQLMLTAAYLFNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARA 122
[Close]
BLAST of mRNA_F-serratus_M_contig116.1317.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.250e-54
Identity = 85/122 (69.67%), Postives = 96/122 (78.69%), Query Frame = 1 
Query:    1 MTVAAPLGLRIENLRCDKGGEYSGQEFRTLCVGAGINIEYTATNTPQQNGVSERDGQTLAKIARCLMKDGDFPPFMWGELMFTATYLANRSPHSTLEGATPYSKMHNLEPDLTGLRAIGARA 366
            M VAA  G +IE +RCDKGGE +G +FR  C  + I +EY ATNTPQQ GVSERDGQTLA + RCL+KDGDFPP MWGE+M TA YL NRSPHS L GATPYSK+HN  PDL+GLR IGARA
Sbjct:  112 MCVAAAGGYQIETIRCDKGGENTGSDFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGEIMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARA 233
[Close]
BLAST of mRNA_F-serratus_M_contig116.1317.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 2.050e-54
Identity = 88/122 (72.13%), Postives = 96/122 (78.69%), Query Frame = 1 
Query:    1 MTVAAPLGLRIENLRCDKGGEYSGQEFRTLCVGAGINIEYTATNTPQQNGVSERDGQTLAKIARCLMKDGDFPPFMWGELMFTATYLANRSPHSTLEGATPYSKMHNLEPDLTGLRAIGARA 366
            M VAA  G RIE +RCDKGGE +G EFR  C  + I +EY ATNTPQQ GVSERDGQTLA + RCL+KDGDFPP MWGELM TA YL NRSPHS L GATPYSK+HN  PDL+GLR IGARA
Sbjct:   24 MCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARA 145
[Close]
BLAST of mRNA_F-serratus_M_contig116.1317.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 6.240e-54
Identity = 88/122 (72.13%), Postives = 96/122 (78.69%), Query Frame = 1 
Query:    1 MTVAAPLGLRIENLRCDKGGEYSGQEFRTLCVGAGINIEYTATNTPQQNGVSERDGQTLAKIARCLMKDGDFPPFMWGELMFTATYLANRSPHSTLEGATPYSKMHNLEPDLTGLRAIGARA 366
            M VAA  G RIE +RCDKGGE +G EFR  C  + I +EY ATNTPQQ GVSERDGQTLA + RCL+KDGDFPP MWGELM TA YL NRSPHS L GATPYSK+HN  PDL+GLR IGARA
Sbjct:  158 MCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARA 279
[Close]
BLAST of mRNA_F-serratus_M_contig116.1317.1 vs. uniprot
Match: A0A6H5KV62_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV62_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 8.950e-54
Identity = 83/122 (68.03%), Postives = 94/122 (77.05%), Query Frame = 1 
Query:    1 MTVAAPLGLRIENLRCDKGGEYSGQEFRTLCVGAGINIEYTATNTPQQNGVSERDGQTLAKIARCLMKDGDFPPFMWGELMFTATYLANRSPHSTLEGATPYSKMHNLEPDLTGLRAIGARA 366
            M VAA  G  I+ +RCDKGGE +G EFR  C  + I +EY ATNTPQQ GVS RDGQ+LA++ RCL+KDGDFPP MWGELM TA YL NRSPH  L GATPYSK+HN  PDL+GLR IGARA
Sbjct:   49 MCVAAAGGYWIKAIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSGRDGQSLAEVTRCLVKDGDFPPSMWGELMLTAAYLLNRSPHLALGGATPYSKLHNKSPDLSGLRVIGARA 170
[Close]
BLAST of mRNA_F-serratus_M_contig116.1317.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 5.140e-53
Identity = 88/122 (72.13%), Postives = 96/122 (78.69%), Query Frame = 1 
Query:    1 MTVAAPLGLRIENLRCDKGGEYSGQEFRTLCVGAGINIEYTATNTPQQNGVSERDGQTLAKIARCLMKDGDFPPFMWGELMFTATYLANRSPHSTLEGATPYSKMHNLEPDLTGLRAIGARA 366
            M VAA  G RIE +RCDKGGE +G EFR  C  + I +EY ATNTPQQ GVSERDGQTLA + RCL+KDGDFPP MWGELM TA YL NRSPHS L GATPYSK+HN  PDL+GLR IGARA
Sbjct:  158 MCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARA 279
[Close]
BLAST of mRNA_F-serratus_M_contig116.1317.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 7.890e-53
Identity = 87/122 (71.31%), Postives = 95/122 (77.87%), Query Frame = 1 
Query:    1 MTVAAPLGLRIENLRCDKGGEYSGQEFRTLCVGAGINIEYTATNTPQQNGVSERDGQTLAKIARCLMKDGDFPPFMWGELMFTATYLANRSPHSTLEGATPYSKMHNLEPDLTGLRAIGARA 366
            M VAA  G RIE +RCDKGGE +G EFR  C  + I +EY ATNTPQQ G SERDGQTLA + RCL+KDGDFPP MWGELM TA YL NRSPHS L GATPYSK+HN  PDL+GLR IGARA
Sbjct:  534 MCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARA 655
[Close]
BLAST of mRNA_F-serratus_M_contig116.1317.1 vs. uniprot
Match: A0A6H5JPZ7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPZ7_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.270e-52
Identity = 81/122 (66.39%), Postives = 93/122 (76.23%), Query Frame = 1 
Query:    1 MTVAAPLGLRIENLRCDKGGEYSGQEFRTLCVGAGINIEYTATNTPQQNGVSERDGQTLAKIARCLMKDGDFPPFMWGELMFTATYLANRSPHSTLEGATPYSKMHNLEPDLTGLRAIGARA 366
            M VAA  G RI  +RCDKGGE SG EFR  C  + I +EY ATNTP+  GVSERDGQ+LA + +CL+KDGDFPP +WGELM TA  L N SPHS L GATPYSK+HN+ PDL+GLR IGARA
Sbjct:    1 MCVAAAGGYRIGTVRCDKGGENSGSEFRDYCKNSAIKLEYAATNTPEYIGVSERDGQSLAGVTQCLLKDGDFPPSVWGELMLTAANLLNISPHSALGGATPYSKLHNMSPDLSGLRVIGARA 122
[Close]
BLAST of mRNA_F-serratus_M_contig116.1317.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.530e-52
Identity = 87/122 (71.31%), Postives = 95/122 (77.87%), Query Frame = 1 
Query:    1 MTVAAPLGLRIENLRCDKGGEYSGQEFRTLCVGAGINIEYTATNTPQQNGVSERDGQTLAKIARCLMKDGDFPPFMWGELMFTATYLANRSPHSTLEGATPYSKMHNLEPDLTGLRAIGARA 366
            M VAA  G RIE +RCDKGGE +G EFR  C  + I +EY ATNTPQQ GVSERDGQTLA + RCL+KDGDFPP MWGELM TA YL NRSPHS L GATPYSK+ N  PDL+GLR IGARA
Sbjct:  482 MCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLRNKSPDLSGLRVIGARA 603
[Close]
BLAST of mRNA_F-serratus_M_contig116.1317.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.540e-52
Identity = 88/122 (72.13%), Postives = 96/122 (78.69%), Query Frame = 1 
Query:    1 MTVAAPLGLRIENLRCDKGGEYSGQEFRTLCVGAGINIEYTATNTPQQNGVSERDGQTLAKIARCLMKDGDFPPFMWGELMFTATYLANRSPHSTLEGATPYSKMHNLEPDLTGLRAIGARA 366
            M VAA  G RIE +RCDKGGE +G EFR  C  + I +EY ATNTPQQ GVSERDGQTLA + RCL+KDGDFPP MWGELM TA YL NRSPHS L GATPYSK+HN  PDL+GLR IGARA
Sbjct:  158 MCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARA 279
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig116.1317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ40_9PHAE5.760e-5569.67Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KF63_9PHAE1.250e-5469.67Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K5H2_9PHAE2.050e-5472.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCM0_9PHAE6.240e-5472.13Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5KV62_9PHAE8.950e-5468.03Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K500_9PHAE5.140e-5372.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KT84_9PHAE7.890e-5371.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPZ7_9PHAE1.270e-5266.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVF6_9PHAE1.530e-5271.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE1.540e-5272.13Integrase catalytic domain-containing protein n=11... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig116contigF-serratus_M_contig116:450263..450628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score104.0
Seed ortholog evalue5.1e-20
Seed eggNOG ortholog15368.BRADI1G43020.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size366
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929058.6253834-CDS-F-serratus_M_contig116:450262..4506281622929058.6253834-CDS-F-serratus_M_contig116:450262..450628Fucus serratus maleCDSF-serratus_M_contig116 450263..450628 -
1690962686.13811-CDS-F-serratus_M_contig116:450262..4506281690962686.13811-CDS-F-serratus_M_contig116:450262..450628Fucus serratus maleCDSF-serratus_M_contig116 450263..450628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig116.1317.1prot_F-serratus_M_contig116.1317.1Fucus serratus malepolypeptideF-serratus_M_contig116 450263..450628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig116.1317.1

>prot_F-serratus_M_contig116.1317.1 ID=prot_F-serratus_M_contig116.1317.1|Name=mRNA_F-serratus_M_contig116.1317.1|organism=Fucus serratus male|type=polypeptide|length=122bp
MTVAAPLGLRIENLRCDKGGEYSGQEFRTLCVGAGINIEYTATNTPQQNG
VSERDGQTLAKIARCLMKDGDFPPFMWGELMFTATYLANRSPHSTLEGAT
PYSKMHNLEPDLTGLRAIGARA
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mRNA from alignment at F-serratus_M_contig116:450263..450628-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig116.1317.1 ID=mRNA_F-serratus_M_contig116.1317.1|Name=mRNA_F-serratus_M_contig116.1317.1|organism=Fucus serratus male|type=mRNA|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig116:450263..450628- (Fucus serratus male)
ATGACTGTGGCCGCCCCGTTAGGACTCCGGATCGAAAATCTTCGATGCGA
CAAAGGTGGCGAATATAGTGGACAGGAGTTCAGGACCCTGTGCGTCGGAG
CGGGGATCAACATCGAGTATACCGCGACCAACACGCCACAGCAAAACGGA
GTATCCGAGAGAGATGGACAGACACTGGCCAAGATCGCCCGATGCCTTAT
GAAGGACGGAGACTTTCCCCCGTTCATGTGGGGAGAGCTGATGTTCACGG
CCACATACTTAGCCAACAGGTCCCCCCATTCTACTCTGGAAGGGGCCACC
CCATACTCCAAAATGCACAATTTGGAGCCGGACCTCACGGGCTTGCGCGC
CATCGGAGCCAGAGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig116:450263..450628-

>mRNA_F-serratus_M_contig116.1317.1 ID=mRNA_F-serratus_M_contig116.1317.1|Name=mRNA_F-serratus_M_contig116.1317.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig116:450263..450628- (Fucus serratus male)
ATGACTGTGGCCGCCCCGTTAGGACTCCGGATCGAAAATCTTCGATGCGA
CAAAGGTGGCGAATATAGTGGACAGGAGTTCAGGACCCTGTGCGTCGGAG
CGGGGATCAACATCGAGTATACCGCGACCAACACGCCACAGCAAAACGGA
GTATCCGAGAGAGATGGACAGACACTGGCCAAGATCGCCCGATGCCTTAT
GAAGGACGGAGACTTTCCCCCGTTCATGTGGGGAGAGCTGATGTTCACGG
CCACATACTTAGCCAACAGGTCCCCCCATTCTACTCTGGAAGGGGCCACC
CCATACTCCAAAATGCACAATTTGGAGCCGGACCTCACGGGCTTGCGCGC
CATCGGAGCCAGAGCAATGACTGTGGCCGCCCCGTTAGGACTCCGGATCG
AAAATCTTCGATGCGACAAAGGTGGCGAATATAGTGGACAGGAGTTCAGG
ACCCTGTGCGTCGGAGCGGGGATCAACATCGAGTATACCGCGACCAACAC
GCCACAGCAAAACGGAGTATCCGAGAGAGATGGACAGACACTGGCCAAGA
TCGCCCGATGCCTTATGAAGGACGGAGACTTTCCCCCGTTCATGTGGGGA
GAGCTGATGTTCACGGCCACATACTTAGCCAACAGGTCCCCCCATTCTAC
TCTGGAAGGGGCCACCCCATACTCCAAAATGCACAATTTGGAGCCGGACC
TCACGGGCTTGCGCGCCATCGGAGCCAGAGCA
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