mRNA_F-serratus_M_contig116.1311.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig116.1311.1
Unique NamemRNA_F-serratus_M_contig116.1311.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig116.1311.1 vs. uniprot
Match: D8LN40_ECTSI (60S ribosomal protein L7a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN40_ECTSI)

HSP 1 Score: 437 bits (1124), Expect = 7.150e-154
Identity = 226/255 (88.63%), Postives = 241/255 (94.51%), Query Frame = 1 
Query:    1 GVSKKPVRKHVKSTAKKVPDPLFPARKRNFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILTQRLKVPPSINQFSKTLDKNQATELCKLLMKYQPEDKKAKHQRLKEIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEKKASIVVIAHDVNPIELVVWVPALCRKMGVPYCIMKGKSRLGTLVHQKNAAVICLTQVNKEDESKLNTFKGNFTAQFNEGFQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 765
            GV+KK V+K VKST KKV DPLFPARK++FRIGRDIQPKVDLSRFVKWPRYIR+QRQRKIL QRLKVPPSINQFSK +DKNQATEL K+LMKYQPEDKKAK QRLKEIAAAKEAGK+PAPSKAPKVIKFGLKHVTTLIEE+KAS+VVIAHDV PIELVVW+PALCRKMG+PYCIMKGK+RLGTLVHQKNAAVICLT VNKEDESKL+  K NFTAQFNEGF RKWGGG+MGLKTQRKLEKRQKAIEAELAKKAQY
Sbjct:    2 GVAKKQVKKQVKSTPKKVADPLFPARKKSFRIGRDIQPKVDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGKEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVTPIELVVWLPALCRKMGIPYCIMKGKARLGTLVHQKNAAVICLTTVNKEDESKLSNLKSNFTAQFNEGFVRKWGGGVMGLKTQRKLEKRQKAIEAELAKKAQY 256
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BLAST of mRNA_F-serratus_M_contig116.1311.1 vs. uniprot
Match: A0A6V1R9A7_HETAK (60S ribosomal protein L7a n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R9A7_HETAK)

HSP 1 Score: 321 bits (823), Expect = 4.530e-108
Identity = 178/259 (68.73%), Postives = 212/259 (81.85%), Query Frame = 1 
Query:    4 VSKKPVR-KHVKSTAKKVPDPLFPARKRNFRIGRDIQPKV-DLSRFVKWPRYIRIQRQRKILTQRLKVPPSINQFSKTLDKNQATELCKLLMKYQPEDKKAKHQRLKEIAAAKEA-GKDPAPSKAPKVIKFGLKHVTTLIEEKKASIVVIAHDVNPIELVVWVPALCRKMGVPYCIMKGKSRLGTLVHQKNAAVICLTQVNKEDESKLNTFKGNFTAQFNEGFQRKWGGGIMGLKTQRKLEKRQKAIEAELAKK--AQY 765
            V +KP + K     A  V DPLF A+ R+FR+G DI+PK  DLSR+VKWPR +RIQRQRKIL QRLKVPP+I QFS+ L+KNQATEL KLL+KYQPE KKAK QRLKE+AAA    G+ P P+     +K+GLKHVTTLIE+K+A +V IAHDVNP+ELVVW+PALCRKMGVP+C++K K+RLGTL H+KNAAV+ LT+VNKED++KL+T   NFTAQFN+   RKWGGGIMGLKTQRKLEKRQKA+EAELAKK  AQY
Sbjct:    2 VQRKPAKGKPAAKKAVSVKDPLFQAKPRSFRVGGDIRPKKRDLSRYVKWPRNVRIQRQRKILLQRLKVPPAIQQFSQPLEKNQATELFKLLVKYQPETKKAKQQRLKEMAAAGATKGEKPGPT-----LKYGLKHVTTLIEQKEAKLVCIAHDVNPLELVVWLPALCRKMGVPFCVVKDKARLGTLCHKKNAAVVALTEVNKEDKAKLDTLGANFTAQFNDTPVRKWGGGIMGLKTQRKLEKRQKALEAELAKKTSAQY 255
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BLAST of mRNA_F-serratus_M_contig116.1311.1 vs. uniprot
Match: F0Y2N8_AURAN (60S ribosomal protein L7a (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2N8_AURAN)

HSP 1 Score: 313 bits (801), Expect = 9.670e-105
Identity = 168/252 (66.67%), Postives = 194/252 (76.98%), Query Frame = 1 
Query:    7 SKKPVRKHVKSTAKKVPDPLFPARKRNFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILTQRLKVPPSINQFSKTLDKNQATELCKLLMKYQPEDKKAKHQRLKEIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEKKASIVVIAHDVNPIELVVWVPALCRKMGVPYCIMKGKSRLGTLVHQKNAAVICLTQVNKEDESKLNTFKGNFTAQFNEGFQ--RKWGGGIMGLKTQRKLEKRQKAIEAELAKK 756
            SKK V+K         PDPLF A  RNFR+G DIQP  DLSRFVKWPRY+R+QRQ+KIL QRLKVPP++NQF+ TLDKNQA EL KLLMKYQPEDK AK  R+K +A AK AG      KAP V+KFGLKHVT L+E KKA +V IA DV+PIELVVW+PALC+KM VPYCI+K KSRLGT+VHQK AAV CLT V KED+  L+  + NF A +N+     RKWGGGIMGLKTQ KL KR+KA++AELAKK
Sbjct:    3 SKKEVKKAPPKKEAAKPDPLFQATPRNFRVGGDIQPTRDLSRFVKWPRYVRLQRQKKILQQRLKVPPALNQFATTLDKNQAAELFKLLMKYQPEDKAAKADRVKALAEAKAAGGAAPEGKAPTVVKFGLKHVTYLVENKKAKLVCIASDVDPIELVVWLPALCKKMDVPYCIVKNKSRLGTVVHQKTAAVCCLTTVKKEDQHSLDQLRSNFKAMYNDNVAHARKWGGGIMGLKTQAKLAKREKALQAELAKK 254
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BLAST of mRNA_F-serratus_M_contig116.1311.1 vs. uniprot
Match: T0QDT5_SAPDV (60S ribosomal protein L7a n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0QDT5_SAPDV)

HSP 1 Score: 308 bits (789), Expect = 9.690e-103
Identity = 169/249 (67.87%), Postives = 199/249 (79.92%), Query Frame = 1 
Query:   31 VKSTA--KKVPDPLFPARKRNFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILTQRLKVPPSINQFSKTLDKNQATELCKLLMKYQPEDKKAKHQRLKEIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEKKASIVVIAHDVNPIELVVWVPALCRKMGVPYCIMKGKSRLGTLVHQKNAAVICLTQVNKEDESKLNTFKGNFTAQFNEG--FQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 765
             KSTA  KK  DPLFP+  +NFR+G DIQPK DLSRFV+WP+ +R+QRQ KILT RLKVPPSINQF+ TLDKN AT+L KLL+KYQPE K AK QRL++IAA KE    P     P VIK+GL HVT+LIE KKA +V IAHDV PIELVV++PALCRKM +PYCI+KGK+RLG LVH+KNAAV+ LTQVNKED++K ++    F AQFN+    +RKWGGGIMGLKTQ+KLE R KA+ AELAKKAQY
Sbjct:   23 AKSTASKKKGADPLFPSAPKNFRLGGDIQPKRDLSRFVRWPKNVRLQRQHKILTTRLKVPPSINQFTNTLDKNAATDLYKLLLKYQPESKAAKTQRLRDIAAGKEQVSAP-----PAVIKYGLNHVTSLIENKKAKMVCIAHDVTPIELVVFLPALCRKMDIPYCIVKGKARLGQLVHKKNAAVVALTQVNKEDKAKFDSLNTAFRAQFNDESTHRRKWGGGIMGLKTQKKLELRAKAVAAELAKKAQY 266
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BLAST of mRNA_F-serratus_M_contig116.1311.1 vs. uniprot
Match: A0A0P1B814_PLAHL (60S ribosomal protein L7a n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1B814_PLAHL)

HSP 1 Score: 305 bits (780), Expect = 2.110e-101
Identity = 167/247 (67.61%), Postives = 197/247 (79.76%), Query Frame = 1 
Query:   31 VKSTAKKVPDPLFPARKRNFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILTQRLKVPPSINQFSKTLDKNQATELCKLLMKYQPEDKKAKHQRLKEIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEKKASIVVIAHDVNPIELVVWVPALCRKMGVPYCIMKGKSRLGTLVHQKNAAVICLTQVNKEDESKLNTFKGNFTAQFNE--GFQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 765
            V ST+KK  +PLF +  +NFR G DIQPK DLSRFV+WPRY+R+QRQRKIL QRLKVPPSINQFS T+DKN AT+L KLL+KYQPE K AK  RL+ IAA K+    P     P V+KFGL HVT+LIE KKA +VVIAHDVNPIELVV++PALCR+  +PYCI+KGK+RLG LVHQKNAAV+ LT VNKED++K ++    F A+FNE    +RKWGGGIMGLKTQ+KLE R+KAI AE AKKAQY
Sbjct:   25 VSSTSKK--NPLFASTPKNFRKGNDIQPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSINQFSNTVDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKQEATAP-----PAVVKFGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLSQVFRAKFNEDSATRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 264
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BLAST of mRNA_F-serratus_M_contig116.1311.1 vs. uniprot
Match: A0A3R7JAR0_9STRA (60S ribosomal protein L7a n=8 Tax=Peronosporaceae TaxID=4777 RepID=A0A3R7JAR0_9STRA)

HSP 1 Score: 304 bits (779), Expect = 3.090e-101
Identity = 166/247 (67.21%), Postives = 195/247 (78.95%), Query Frame = 1 
Query:   37 STAKKVP--DPLFPARKRNFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILTQRLKVPPSINQFSKTLDKNQATELCKLLMKYQPEDKKAKHQRLKEIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEKKASIVVIAHDVNPIELVVWVPALCRKMGVPYCIMKGKSRLGTLVHQKNAAVICLTQVNKEDESKLNTFKGNFTAQFNEG--FQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 765
            STA   P  DPLF +  +NFR G DIQPK DLSRFV+WPRY+R+QRQRKIL QRLKVPPS+NQFS TLDKN AT+L KLL+KYQPE K AK  RL+ IAA KE    P     P V+KFGL HVT+L+E KKA +VVIAHDV+PIELVV++PALCR+  +PYCI+KGKSRLG LVHQKNAAV+ LT VNKED++K ++    F A+FNE    +RKWGGGIMGLKTQ+KLE R+KA+ AE AKKAQY
Sbjct:   24 STASSKPKKDPLFQSTPKNFRRGGDIQPKRDLSRFVRWPRYVRLQRQRKILYQRLKVPPSVNQFSNTLDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVVKFGLNHVTSLVENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKSRLGQLVHQKNAAVVALTHVNKEDKAKFDSLSEAFHAKFNEDSTIRRKWGGGIMGLKTQKKLELREKAVAAEAAKKAQY 265
[Close]
BLAST of mRNA_F-serratus_M_contig116.1311.1 vs. uniprot
Match: A0A7S3HBR5_9STRA (60S ribosomal protein L7a n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBR5_9STRA)

HSP 1 Score: 301 bits (772), Expect = 2.820e-100
Identity = 158/236 (66.95%), Postives = 190/236 (80.51%), Query Frame = 1 
Query:   58 DPLFPARKRNFRIGRDIQPK-VDLSRFVKWPRYIRIQRQRKILTQRLKVPPSINQFSKTLDKNQATELCKLLMKYQPEDKKAKHQRLKEIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEKKASIVVIAHDVNPIELVVWVPALCRKMGVPYCIMKGKSRLGTLVHQKNAAVICLTQVNKEDESKLNTFKGNFTAQFNEGFQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQ 762
            +PLFP+  ++FRIG D++ K  DLSR+V+WPRY+RIQRQ+KIL QRLKVPPSINQF +TLDKNQA+EL KLL+KYQPE K AK  RL+ +A A  A +       P  +KFGLKHVTTLIE+KKA +VVI HDV+PIELV+W+PALCRKM VP+ I+KGKSRLGTL H+K  +V+CLT VNKEDESKL T   NF AQFN+  +RKWGGGIMGLKTQ KL+KR KA+E E AKKA+
Sbjct:   20 NPLFPSTPKSFRIGGDLRLKGKDLSRYVRWPRYVRIQRQKKILLQRLKVPPSINQFQRTLDKNQASELFKLLVKYQPETKAAKTTRLEALAQATAAKESTPSGPPPATLKFGLKHVTTLIEQKKAKLVVIPHDVDPIELVLWLPALCRKMNVPFAIVKGKSRLGTLTHKKTCSVVCLTSVNKEDESKLKTLGENFKAQFNDNVERKWGGGIMGLKTQAKLDKRAKALEVEEAKKAE 255
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BLAST of mRNA_F-serratus_M_contig116.1311.1 vs. uniprot
Match: A0A6G0X5U8_9STRA (60S ribosomal protein L7a n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0X5U8_9STRA)

HSP 1 Score: 300 bits (768), Expect = 1.600e-99
Identity = 160/245 (65.31%), Postives = 193/245 (78.78%), Query Frame = 1 
Query:   37 STAKKVPDPLFPARKRNFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILTQRLKVPPSINQFSKTLDKNQATELCKLLMKYQPEDKKAKHQRLKEIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEKKASIVVIAHDVNPIELVVWVPALCRKMGVPYCIMKGKSRLGTLVHQKNAAVICLTQVNKEDESKLNTFKGNFTAQFNEG--FQRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 765
            ++ KK  DPLFP+  RNFR+G +IQPK DLSRFV+WP+ +R+QRQ KIL  RLKVPPS+NQF+ TLDKN A +L KLL+KYQPE K AK QRLK+IAA KE    P     P VIK+GL HVT+LIE KKA +VVIAHDV P+ELVV++PALCRKM +PY I KGK+RLG LVH+KNAAV+ LTQVNKED++K ++    F  QFN+    +RKWGGGIMGLKTQ+KLE R+KA+ AE AKKAQY
Sbjct:   29 ASKKKAADPLFPSTPRNFRLGGNIQPKRDLSRFVRWPKNVRLQRQAKILQTRLKVPPSVNQFTNTLDKNHAVDLLKLLLKYQPETKAAKQQRLKDIAAGKEQAAAP-----PAVIKYGLNHVTSLIENKKAKLVVIAHDVTPLELVVFLPALCRKMDIPYAIFKGKARLGQLVHKKNAAVVALTQVNKEDKAKFDSLATAFRGQFNDETTHRRKWGGGIMGLKTQKKLELREKAVAAEAAKKAQY 268
[Close]
BLAST of mRNA_F-serratus_M_contig116.1311.1 vs. uniprot
Match: M4B6Z0_HYAAE (60S ribosomal protein L7a n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6Z0_HYAAE)

HSP 1 Score: 299 bits (765), Expect = 4.000e-99
Identity = 165/247 (66.80%), Postives = 195/247 (78.95%), Query Frame = 1 
Query:   31 VKSTAKKVPDPLFPARKRNFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILTQRLKVPPSINQFSKTLDKNQATELCKLLMKYQPEDKKAKHQRLKEIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEKKASIVVIAHDVNPIELVVWVPALCRKMGVPYCIMKGKSRLGTLVHQKNAAVICLTQVNKEDESKLNTFKGNFTAQFNEGF--QRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 765
            V + AKK  +PLF +R +NFR G DIQPK DLSRFV+WPRY+RIQRQRKIL QRLKVPPSINQFS  LDKN AT+L KLL+KYQPE K AK  RL+ IAA KE    P     P V+KFGL HVTTLIE K+A +VVIAHDV+PIELVV++PALCR+  +PYCI+KGK+RLG LVHQKNAA + LT VNKED++K ++  G   A++N+    +RKWGGGIMGLKTQ+KLE R+KAI AE AKKAQY
Sbjct:   25 VSAAAKK--NPLFVSRPKNFRRGGDIQPKRDLSRFVRWPRYVRIQRQRKILYQRLKVPPSINQFSYALDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PSVVKFGLNHVTTLIETKRAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIIKGKARLGQLVHQKNAAAVALTHVNKEDKAKFDSLAGVVRAKYNDDSTSRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 264
[Close]
BLAST of mRNA_F-serratus_M_contig116.1311.1 vs. uniprot
Match: K3WB90_GLOUD (60S ribosomal protein L7a n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WB90_GLOUD)

HSP 1 Score: 298 bits (764), Expect = 6.720e-99
Identity = 161/238 (67.65%), Postives = 189/238 (79.41%), Query Frame = 1 
Query:   58 DPLFPARKRNFRIGRDIQPKVDLSRFVKWPRYIRIQRQRKILTQRLKVPPSINQFSKTLDKNQATELCKLLMKYQPEDKKAKHQRLKEIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEKKASIVVIAHDVNPIELVVWVPALCRKMGVPYCIMKGKSRLGTLVHQKNAAVICLTQVNKEDESKLNTFKGNFTAQFNEGF--QRKWGGGIMGLKTQRKLEKRQKAIEAELAKKAQY 765
            DPLF +  +NFR+G DIQPK DLSRFV+WPRY+RIQRQRKIL QRLKVPPSINQF+ T+DKN A +L KLL+KYQPE K AK  RL+ IAA KE    P     P VIK+GL HVT+LIE KKA +VVIAHDVNPIELVV++PALCRK  +PY I+KGK+RLG LVH+KNAAV+ LT VNKED+SK ++    F  +FN+    +RKWGGGIMGLKTQ+KLE R+KAI AE AKKAQY
Sbjct:   37 DPLFQSAPKNFRLGGDIQPKRDLSRFVRWPRYVRIQRQRKILYQRLKVPPSINQFTNTIDKNTAADLFKLLLKYQPETKAAKTLRLRNIAAGKEEASAP-----PAVIKYGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRKFDIPYTIVKGKARLGQLVHKKNAAVVALTHVNKEDKSKFDSLASAFKTKFNDDSTTRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 269
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig116.1311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN40_ECTSI7.150e-15488.6360S ribosomal protein L7a n=2 Tax=Ectocarpus TaxID... [more]
A0A6V1R9A7_HETAK4.530e-10868.7360S ribosomal protein L7a n=2 Tax=Heterosigma akas... [more]
F0Y2N8_AURAN9.670e-10566.6760S ribosomal protein L7a (Fragment) n=1 Tax=Aureo... [more]
T0QDT5_SAPDV9.690e-10367.8760S ribosomal protein L7a n=3 Tax=Saprolegniaceae ... [more]
A0A0P1B814_PLAHL2.110e-10167.6160S ribosomal protein L7a n=2 Tax=Peronosporaceae ... [more]
A0A3R7JAR0_9STRA3.090e-10167.2160S ribosomal protein L7a n=8 Tax=Peronosporaceae ... [more]
A0A7S3HBR5_9STRA2.820e-10066.9560S ribosomal protein L7a n=1 Tax=Spumella elongat... [more]
A0A6G0X5U8_9STRA1.600e-9965.3160S ribosomal protein L7a n=8 Tax=Aphanomyces TaxI... [more]
M4B6Z0_HYAAE4.000e-9966.8060S ribosomal protein L7a n=1 Tax=Hyaloperonospora... [more]
K3WB90_GLOUD6.720e-9967.6560S ribosomal protein L7a n=2 Tax=Pythiaceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig116contigF-serratus_M_contig116:245567..248531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score443.7
Seed ortholog evalue5.7e-122
Seed eggNOG ortholog2880.D8LN40
Preferred nameDOCK4
KEGG rclassRC00020,RC00041
KEGG koko:K01054,ko:K02936,ko:K08272,ko:K11649,ko:K17697
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko03010,ko04015,ko04150,ko04152,ko04714,ko04723,ko04923,ko05225,map00561,map01100,map03010,map04015,map04150,map04152,map04714,map04723,map04923,map05225
KEGG ModuleM00098,M00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000470,GO:0000491,GO:0000492,GO:0002181,GO:0003008,GO:0003013,GO:0003018,GO:0003056,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005096,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006937,GO:0006940,GO:0008015,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009987,GO:0010467,GO:0012505,GO:0014910,GO:0014911,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016477,GO:0017016,GO:0017048,GO:0019229,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030054,GO:0030165,GO:0030234,GO:0030334,GO:0030335,GO:0030515,GO:0030695,GO:0030971,GO:0031090,GO:0031267,GO:0031974,GO:0031981,GO:0032420,GO:0032421,GO:0032501,GO:0032879,GO:0032991,GO:0034470,GO:0034512,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035150,GO:0035296,GO:0040011,GO:0040012,GO:0040017,GO:0042221,GO:0042254,GO:0042273,GO:0042330,GO:0042788,GO:0042995,GO:0043005,GO:0043043,GO:0043085,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043547,GO:0043603,GO:0043604,GO:0043933,GO:0044057,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045906,GO:0045932,GO:0045986,GO:0046483,GO:0048365,GO:0048518,GO:0048519,GO:0048522,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050880,GO:0050896,GO:0051020,GO:0051179,GO:0051239,GO:0051241,GO:0051270,GO:0051272,GO:0051336,GO:0051345,GO:0051674,GO:0051716,GO:0055044,GO:0060326,GO:0060589,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090066,GO:0090257,GO:0090304,GO:0097159,GO:0097458,GO:0097746,GO:0097755,GO:0098588,GO:0098772,GO:0098805,GO:0098858,GO:0098862,GO:0120025,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903522,GO:1903523,GO:1904694,GO:1904752,GO:1904754,GO:1990782,GO:1990904,GO:2000145,GO:2000147
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG1358@1,KOG3166@2759
Ec32 ortholog descriptionRibosomal protein L7Ae/L8/Nhp2 family
Ec32 orthologEc-05_003390.1
EC3.1.1.23
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01002,ko03009,ko03011,ko03021,ko03036,ko04131
Exons5
Model size768
Cds size768
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig116.1311.1prot_F-serratus_M_contig116.1311.1Fucus serratus malepolypeptideF-serratus_M_contig116 245567..248531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.4199934-CDS-F-serratus_M_contig116:245566..2456771622929057.4199934-CDS-F-serratus_M_contig116:245566..245677Fucus serratus maleCDSF-serratus_M_contig116 245567..245677 +
1690962685.6532276-CDS-F-serratus_M_contig116:245566..2456771690962685.6532276-CDS-F-serratus_M_contig116:245566..245677Fucus serratus maleCDSF-serratus_M_contig116 245567..245677 +
1622929057.4315565-CDS-F-serratus_M_contig116:246823..2468891622929057.4315565-CDS-F-serratus_M_contig116:246823..246889Fucus serratus maleCDSF-serratus_M_contig116 246824..246889 +
1690962685.6723068-CDS-F-serratus_M_contig116:246823..2468891690962685.6723068-CDS-F-serratus_M_contig116:246823..246889Fucus serratus maleCDSF-serratus_M_contig116 246824..246889 +
1622929057.4463875-CDS-F-serratus_M_contig116:247326..2475241622929057.4463875-CDS-F-serratus_M_contig116:247326..247524Fucus serratus maleCDSF-serratus_M_contig116 247327..247524 +
1690962685.686058-CDS-F-serratus_M_contig116:247326..2475241690962685.686058-CDS-F-serratus_M_contig116:247326..247524Fucus serratus maleCDSF-serratus_M_contig116 247327..247524 +
1622929057.4631596-CDS-F-serratus_M_contig116:247951..2481101622929057.4631596-CDS-F-serratus_M_contig116:247951..248110Fucus serratus maleCDSF-serratus_M_contig116 247952..248110 +
1690962685.6959908-CDS-F-serratus_M_contig116:247951..2481101690962685.6959908-CDS-F-serratus_M_contig116:247951..248110Fucus serratus maleCDSF-serratus_M_contig116 247952..248110 +
1622929057.4741266-CDS-F-serratus_M_contig116:248297..2485311622929057.4741266-CDS-F-serratus_M_contig116:248297..248531Fucus serratus maleCDSF-serratus_M_contig116 248298..248531 +
1690962685.7091835-CDS-F-serratus_M_contig116:248297..2485311690962685.7091835-CDS-F-serratus_M_contig116:248297..248531Fucus serratus maleCDSF-serratus_M_contig116 248298..248531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig116.1311.1

>prot_F-serratus_M_contig116.1311.1 ID=prot_F-serratus_M_contig116.1311.1|Name=mRNA_F-serratus_M_contig116.1311.1|organism=Fucus serratus male|type=polypeptide|length=256bp
GVSKKPVRKHVKSTAKKVPDPLFPARKRNFRIGRDIQPKVDLSRFVKWPR
YIRIQRQRKILTQRLKVPPSINQFSKTLDKNQATELCKLLMKYQPEDKKA
KHQRLKEIAAAKEAGKDPAPSKAPKVIKFGLKHVTTLIEEKKASIVVIAH
DVNPIELVVWVPALCRKMGVPYCIMKGKSRLGTLVHQKNAAVICLTQVNK
EDESKLNTFKGNFTAQFNEGFQRKWGGGIMGLKTQRKLEKRQKAIEAELA
KKAQY*
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mRNA from alignment at F-serratus_M_contig116:245567..248531+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig116.1311.1 ID=mRNA_F-serratus_M_contig116.1311.1|Name=mRNA_F-serratus_M_contig116.1311.1|organism=Fucus serratus male|type=mRNA|length=2965bp|location=Sequence derived from alignment at F-serratus_M_contig116:245567..248531+ (Fucus serratus male)
GGTGTCAGCAAGAAGCCGGTCAGGAAGCATGTCAAATCTACAGCGAAGAA
GGTGCCTGATCCTCTATTCCCCGCTCGCAAGAGGAACTTCAGGATCGGCC
GTGACATCCAGGTATTCCTATAACGTGTCATGTTCAATCGCGCTCAAGCG
ACAAGCATCGGAACAAGATAGAGGTGTTTCACAATTACATACAGTACATT
CGTGTCCAACCATTCTCACTAATAATTTTTGAGACGAGGCCATACTAAAT
ATGTGATTCCGATATCGAACTGCCCTTGCCCATGCTTTAGTTTTAATTAT
GTGGATAGTGTTAAACTATAATATGCGGATTATTTTCACATAGCATGGGG
GAAAAACTGTGAAACACAGCCGCGGTATATCGGCTCAGCTCGCGCGTCTA
TTTATGGTTGTGATAGGGGAGGTGATGGGATGAGACCATCCTCCGCACAG
TGTTTCGATTGGATGGTTGTAATGGCTCATCTTTTGAAGAGTCCTCGGGC
GGCATGAGTCGGTGCGTCCCCTTTGTCCCGTTTTTTTATTCCTTACCTCC
GTCAACTCCCTTCCGTTATCGACGGCATGGACCAGAGGGTTATGACCGGT
GAGGGGGAGAAGCTCGGAAGCATGGGAATCGGACATGCTTGAGCGGTTTG
ATTTTGTCAGCCGAGGAAAGGAAATGCTAATAATAGTACTAATACTATTA
ATAGTACTAATAGCGGCGATGCCACCGCGCCGCAATGACACAAATTTCGG
TGGTAGACTCTTGTAGCGCCGTAGCCCCGGGCGTAATGACAGAAATGCAG
GGGTTGTCTACAAGAATAGGCGAGTGCGTAGTCTTTTTCAATCTTGAACT
CAATTCAAGACATATTCTTGTCGAAAGGTCCTTGTAATGAGTATCTTGTG
GCATTTGTTGTGCTGGTTTGAAGATTGCAGCCACTAGTTTTTCTTAATTT
TTTTTTTGCCACAAAAAAATGGTGTTAATACGTTTGACCCATTTTTTTGC
CACTAAATTACTTGCTTATATGTGTGGGTATCAATCTCGATATTTATATG
TGTGGGTAGAAAGATCGACTCGCTTAGAGAGAAACTTGCCGCGTCCACAC
GTGAAACTGATTTTTCAATCATTACATTGCTTACCTTGGTTGCTCCAGCT
CTAATTTGCTTGTACTTTCTCGTCATACTGATATTGTGCTCTTTTTCTGC
ATGCCTCATCTCCACGGATGTCGAACCATAATCGCTTTTGGCGCCTGCGA
AATTCAGCCCAAGGTGGACCTGTCGCGGTTCGTCAAATGGCCTCGCTATA
TCCGCATCCAACGCCAGCGGAAGGTATGCATGTCACCAAAGTTACACAGC
ATCCATCGCTTGATACCTATTAATAGATGTTCTGCCAGCAGGCAAGCATG
TTGCCTCTTGTCATCGGTCATCGGTAGGAGGCATCCGAATGTTATTATTA
ATAATAGTATATCGTGTCGGCAACTTCCGACGTTGCCCAACTTATAATAA
TATTAATAACGACACCCAAGGTGGATGTTGATTTTTATCAGTTCGGCATA
ATAAAAAAATAACTACTGTACGCTTCGTTTCCTCGTCAGTTAGTACTCTG
GTCCCTCACAAGTGGCTTTGACGAGTGCCTCTACCAGGTTTGAGGTTTGA
GTGCATGTCCCTTGTTATTCTCTTGTTGCGCAGCCAGGCATTAGCCCCCG
CCAGACGCATTAATCAGGCAATCTATTTTCTGTCCGTGTTACTTTTTTTT
TTCTTCTCAGATCCTCACCCAGCGCCTGAAAGTCCCCCCGAGCATCAACC
AGTTCTCGAAGACGCTCGACAAGAACCAGGCCACTGAGCTCTGCAAGCTT
TTGATGAAGTACCAGCCGGAGGACAAAAAGGCCAAGCATCAGCGACTCAA
GGAGATTGCTGCTGCTAAGGAAGCTGGCAAAGATCCCGCCCCTTCCAAGG
CGCCCAAGGTGTGCAAATTTGTGTTGCTGTCTGATGTCGAGCGCTGTGTT
TCAAGGGGTTGACGAGTTTTGCCGACTTTATTCTACTGCAGTCTTCCATT
CTCAAAGAAAACTTAAAACTGCTGTACACGAATACGTCTCGATCCTCTAT
GTCATTGCTAAAAGTTTTTTGCAAGAGGATTCTTCTTTTTTGTTGTGGCG
GATGCAATGTATGTGGTCTAGCCTTAGAACTGATTATGATGACGTTCGGT
TCAATCGCGCCTTTGTGTCGCACATAATTGTTTCCTCTTGCTCGAGCCGA
AATGACCACTTGTATGGTAAGTGGGTGCAGGCCAAGTCTGTTCCCATCAG
TTTGTGGCCCGTGCAGGGTTTCTCATGTGTGTCTGAGGTTCAAGCGTGGG
TCACGGTACTTGATGTGTGGCCATATGCGCAACAGGTGATCAAGTTCGGA
CTGAAGCACGTGACGACGCTGATTGAAGAGAAGAAGGCCTCCATCGTTGT
TATCGCGCACGACGTTAACCCCATTGAGCTTGTGGTGTGGGTTCCGGCCC
TTTGCCGTAAAATGGGTGTACCGTACTGCATCATGAAGGGGAAGGTGAGG
TTTTGAGGGGACACTCTGTGAGCTTTAGTCTAGTATCTCCCACCACTTGA
ATATTATTACTGAGCAAGTGGCATTTCCTGGGAACTTTTTATCCTTTTTC
TTTGAGTGAACGCTTGCATTCGTTATTGACTCGTTCCGTTCTCTTCTCTT
GTGTCCCCACATGTACGTACACATGGCCCAGTCCCGCCTCGGCACCCTGG
TGCACCAGAAAAATGCGGCGGTGATCTGCCTGACTCAGGTCAACAAAGAG
GACGAGAGCAAGCTTAACACCTTCAAGGGTAACTTCACTGCCCAGTTCAA
TGAGGGCTTCCAGAGGAAGTGGGGCGGTGGCATCATGGGTCTCAAGACCC
AGCGCAAGCTAGAGAAGAGGCAGAAGGCCATTGAGGCTGAACTGGCCAAG
AAGGCGCAGTACTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig116:245567..248531+

>mRNA_F-serratus_M_contig116.1311.1 ID=mRNA_F-serratus_M_contig116.1311.1|Name=mRNA_F-serratus_M_contig116.1311.1|organism=Fucus serratus male|type=CDS|length=1536bp|location=Sequence derived from alignment at F-serratus_M_contig116:245567..248531+ (Fucus serratus male)
GGTGTCAGCAAGAAGCCGGTCAGGAAGCATGTCAAATCTACAGCGAAGAA
GGTGCCTGATCCTCTATTCCCCGCTCGCAAGAGGAACTTCAGGATCGGCC
GTGACATCCAGGGTGTCAGCAAGAAGCCGGTCAGGAAGCATGTCAAATCT
ACAGCGAAGAAGGTGCCTGATCCTCTATTCCCCGCTCGCAAGAGGAACTT
CAGGATCGGCCGTGACATCCAGCCCAAGGTGGACCTGTCGCGGTTCGTCA
AATGGCCTCGCTATATCCGCATCCAACGCCAGCGGAAGCCCAAGGTGGAC
CTGTCGCGGTTCGTCAAATGGCCTCGCTATATCCGCATCCAACGCCAGCG
GAAGATCCTCACCCAGCGCCTGAAAGTCCCCCCGAGCATCAACCAGTTCT
CGAAGACGCTCGACAAGAACCAGGCCACTGAGCTCTGCAAGCTTTTGATG
AAGTACCAGCCGGAGGACAAAAAGGCCAAGCATCAGCGACTCAAGGAGAT
TGCTGCTGCTAAGGAAGCTGGCAAAGATCCCGCCCCTTCCAAGGCGCCCA
AGATCCTCACCCAGCGCCTGAAAGTCCCCCCGAGCATCAACCAGTTCTCG
AAGACGCTCGACAAGAACCAGGCCACTGAGCTCTGCAAGCTTTTGATGAA
GTACCAGCCGGAGGACAAAAAGGCCAAGCATCAGCGACTCAAGGAGATTG
CTGCTGCTAAGGAAGCTGGCAAAGATCCCGCCCCTTCCAAGGCGCCCAAG
GTGATCAAGTTCGGACTGAAGCACGTGACGACGCTGATTGAAGAGAAGAA
GGCCTCCATCGTTGTTATCGCGCACGACGTTAACCCCATTGAGCTTGTGG
TGTGGGTTCCGGCCCTTTGCCGTAAAATGGGTGTACCGTACTGCATCATG
AAGGGGAAGGTGATCAAGTTCGGACTGAAGCACGTGACGACGCTGATTGA
AGAGAAGAAGGCCTCCATCGTTGTTATCGCGCACGACGTTAACCCCATTG
AGCTTGTGGTGTGGGTTCCGGCCCTTTGCCGTAAAATGGGTGTACCGTAC
TGCATCATGAAGGGGAAGTCCCGCCTCGGCACCCTGGTGCACCAGAAAAA
TGCGGCGGTGATCTGCCTGACTCAGGTCAACAAAGAGGACGAGAGCAAGC
TTAACACCTTCAAGGGTAACTTCACTGCCCAGTTCAATGAGGGCTTCCAG
AGGAAGTGGGGCGGTGGCATCATGGGTCTCAAGACCCAGCGCAAGCTAGA
GAAGAGGCAGAAGGCCATTGAGGCTGAACTGGCCAAGAAGGCGCAGTACT
AATCCCGCCTCGGCACCCTGGTGCACCAGAAAAATGCGGCGGTGATCTGC
CTGACTCAGGTCAACAAAGAGGACGAGAGCAAGCTTAACACCTTCAAGGG
TAACTTCACTGCCCAGTTCAATGAGGGCTTCCAGAGGAAGTGGGGCGGTG
GCATCATGGGTCTCAAGACCCAGCGCAAGCTAGAGAAGAGGCAGAAGGCC
ATTGAGGCTGAACTGGCCAAGAAGGCGCAGTACTAA
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