mRNA_F-serratus_M_contig1159.1297.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1159.1297.1 vs. uniprot
Match: D7FT47_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT47_ECTSI) HSP 1 Score: 583 bits (1503), Expect = 2.780e-191 Identity = 406/863 (47.05%), Postives = 512/863 (59.33%), Query Frame = 2
Query: 74 MVDYRKWDRMDFDVSDSDSDTAEGTRGKIPHGQQLSNTPERTGAHDVATGDARIFEHAEVLRLKGNSLFESGDIPAAIGAYEAQLQLLEGRGDEASLDVTRAALLNQASGLIRLQKFGEAEARCTRILTCSGSTAGRGREDGGGGDARMRALHFRGFARLRQGLFEGACSDLERALAAGDPKDDEARALLKEAEAGAALSSCCDPEAKARALLGEKQAVEAAKYFREAASRARRHCNAQPRLGSEGNKGDAR--VALARNLRMEGVAVSASGDLAAAEMLLMGGLKELR-GLVDVTDSVERAGVVGEEGLMLSALGRVLGQQRKQRQAVEVMRDAVDRLEDAVVG--AVQDGRGHKSDDEGAELPPPRFPEASSSSSSSKAITKAR--DLTPQLARTLARLGSEVL--NLQSRGGAGQDGENNNNYSGH-------PSGAAKVDARLP-------------------STVPDEAIQILERALSLMKAEAADVSRVS---RAGETVVHEG-----SEKDVRHQVATVLDSLSEAYARGKYWEKARSSAEQAVTGWRSLGEPLRAGAAVSLLSLGHILLQLHGIGAGLDEASARWEEAVA-FIDDSTRPLEAVDVRLKVAGYYAGAARADPSRLESLEAKMAEHYRATAALLARVREGDQRT---EEGANGTAAAAAPAHFTVRKCRLSGLCMCIAKALT----------FELAGKEALALEGYAGAVGDDHDEAVKALRKAAELLDLANVSQRDVTWTLRKVGVLQNLALALAKNGEHALSEEKLLDAIAALEQLDDVGTI-----HGETLKNLHKYLAIARRARGDMLGAKKALDRVESLAGDAGREEAENLNRLLGHNRISI 2476
MVDY KWD +D D S S SD G P A D D R + AE LRL+GNS +E GD+ AI AY+AQL++LEGR DEA++++T ALLNQASG I L+KF EAEARC+R+L + +T G + GG +AR RALHFRGFAR R GLF+GACSDL +LAAG DEARALL EAEAGAA+SSC DPEA+ R L + + EAAK FR+AASRARR +A G+E +G VAL+RNLR+EG+AV+ +GD +AEMLL L++LR G EEGL L+ALG +L Q+ K A+E +R+AV L++A+ G A + G + S A PP + +IT+ R LT L TLA LG+ +L +Q G +G + S GA KV P S DEAI +L+RA ++KAE ++ + G V+ E DVR Q A VLD+LSEAY R K WE+AR +AEQ++T WRSLG R GAA SLLSLGH+LLQLHG+GAG +EASARWEEA F + RP +VRLK+AGYY AR+DP+RLESLE K++ HY A L AR R D++T + A AAA AP T + + L +ELA +EA A EGYAGA G+DH+ AV AL KA +LLD A+VS +D WTLRKVGVL +LALALA++GEHA++E KLL+AI L+QLD V +I H TL +L+KYLAI RRARGD GAK AL +VE+L G G EE E LNRLL + +S+
Sbjct: 1 MVDYSKWDNLDSDDSGSGSD------GXXXXXXXXXXXPSARKAAD----DKRQLDQAEALRLQGNSAYELGDVSKAIAAYDAQLRVLEGRKDEAAVEMTCGALLNQASGFISLKKFKEAEARCSRLL--ASATPRGGTKAYGGAEARTRALHFRGFARFRLGLFDGACSDLRSSLAAGTSSGDEARALLLEAEAGAAMSSCPDPEAEGREHLRQGRGREAAKSFRDAASRARRRKDA---AGAEAGEGAVATTVALSRNLRLEGIAVAMAGDPPSAEMLLRTALRDLRVGGXXXXXXXXXXXXXEEEGLTLAALGSLLAQRGKHADALEPLREAVAVLDEAIAGVSANEGGVANSSAGTNARSSPP-----------TPSITEGRITALTRTLTGTLAFLGTSLLAPEVQPSANYGSNGSSTTTTSSGGVTPGVMKGGAEKVTVPAPGFSCDDKGPIVADSGEAGSSKEADEAIDVLKRAHEMLKAETVAMATAGPGQKGGLAGVYSAVGESRGEADVRKQTAKVLDTLSEAYGREKRWERARLAAEQSLTAWRSLGVAGRVGAAASLLSLGHLLLQLHGVGAGFEEASARWEEAATCFKGCAERPSVEAEVRLKIAGYYTKVARSDPARLESLEGKISAHYSEAAVLFARER--DEKTSSLKRAAEAVAAAQAPRDKTAEGSGSAEPVPPLPPPLVDSLEPDGRSRWELAEQEAFAWEGYAGAAGEDHEAAVTALAKAEKLLDHASVSDKDERWTLRKVGVLHSLALALARSGEHAMAENKLLEAIRELQQLDGVDSIAEACVHKGTLTDLYKYLAIVRRARGDFAGAKAALAKVETLGGCEGSEELEGLNRLLAESAVSV 835
BLAST of mRNA_F-serratus_M_contig1159.1297.1 vs. uniprot
Match: UPI0009E2AEF9 (RNA polymerase II-associated protein 3-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2AEF9) HSP 1 Score: 65.1 bits (157), Expect = 4.880e-7 Identity = 55/190 (28.95%), Postives = 84/190 (44.21%), Query Frame = 2
Query: 80 DYRKWDRMDFDVSDSDSDTAEGTRGKIPHGQQLSNTPERTGAHDVATGDARIFEHAEVLRLKGNSLFESGDIPAAIGAYEAQLQLLEGRGDEASLDVTRAAL-LNQASGLIRLQKFGEAEARCTRILTCSGSTAGRGREDGGGGDARMRALHFRGFARLRQGLFEGACSDLERALAAGDPKDDEARALLK 646
DYR WD+ D D +D D E + S++ E + D + R + A + + KGN+LF+ G AI Y A +Q D T A L N+A L++LQ++G AEA C + L GS +A RG AR + G + A +D + L +P + +A+ +K
Sbjct: 111 DYRSWDKFDVDKVLTDMDEQEEMK-------TFSSSEEESDETDEEVENERKLQRALLEKDKGNALFKEGKFEEAINCYTAGIQF----------DPTNAILPANRAMCLLKLQRYGAAEADCNQALLLDGSYT--------------KAYLRRGAARFQLGRIQEAEADYRKVLKL-EPSNRQAQEEMK 268 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1159.1297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1159.1297.1 >prot_F-serratus_M_contig1159.1297.1 ID=prot_F-serratus_M_contig1159.1297.1|Name=mRNA_F-serratus_M_contig1159.1297.1|organism=Fucus serratus male|type=polypeptide|length=803bp MVDYRKWDRMDFDVSDSDSDTAEGTRGKIPHGQQLSNTPERTGAHDVATGback to top mRNA from alignment at F-serratus_M_contig1159:76466..96635- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1159.1297.1 ID=mRNA_F-serratus_M_contig1159.1297.1|Name=mRNA_F-serratus_M_contig1159.1297.1|organism=Fucus serratus male|type=mRNA|length=20170bp|location=Sequence derived from alignment at F-serratus_M_contig1159:76466..96635- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1159:76466..96635- >mRNA_F-serratus_M_contig1159.1297.1 ID=mRNA_F-serratus_M_contig1159.1297.1|Name=mRNA_F-serratus_M_contig1159.1297.1|organism=Fucus serratus male|type=CDS|length=4818bp|location=Sequence derived from alignment at F-serratus_M_contig1159:76466..96635- (Fucus serratus male)back to top |