mRNA_F-serratus_M_contig1156.1291.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1156.1291.1
Unique NamemRNA_F-serratus_M_contig1156.1291.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1291.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 8.550e-69
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 1 
Query:    1 MAKTPSKKSTKAPKKAGGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKS KAPKKAG KK++NKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1291.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 194 bits (494), Expect = 3.530e-62
Identity = 101/116 (87.07%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 MAKTPSKKSTKAPKKAGGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKS KAPKKAG K K  KRTESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1291.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 194 bits (492), Expect = 4.680e-62
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 MAKTPSKKSTKAPKKAG-GKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+ KAPKKA  GKKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1291.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 194 bits (492), Expect = 3.180e-60
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 MAKTPSKKSTKAPKKAG-GKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+ KAPKKA  GKKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1291.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 189 bits (479), Expect = 3.950e-60
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 MAKTPSKKSTKAPKKAGGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+ KAPKKAG K+  NKR E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1291.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 189 bits (479), Expect = 4.630e-60
Identity = 100/118 (84.75%), Postives = 109/118 (92.37%), Query Frame = 1 
Query:    1 MAKTPSKKSTKAPKKAG--GKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKS KAPKK G  GK +  KR ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1291.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 188 bits (477), Expect = 8.490e-60
Identity = 99/116 (85.34%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 MAKTPSKKSTKAPKKAGGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK+S KAPKKA    KS KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1291.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 187 bits (475), Expect = 2.010e-59
Identity = 100/116 (86.21%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 MAKTPSKKSTKAPKKAGGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+  APKKAGGK+ S KRTESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGKR-SRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1291.1 vs. uniprot
Match: A0A7R9ZTA9_9STRA (Histone H2B n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZTA9_9STRA)

HSP 1 Score: 184 bits (466), Expect = 2.940e-57
Identity = 98/115 (85.22%), Postives = 106/115 (92.17%), Query Frame = 1 
Query:    7 KTPSKKSTKAPKKAG-GKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            KTPSK+S KAPKKA  G  KS KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:   64 KTPSKQSAKAPKKASTGSSKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 178
[Close]
BLAST of mRNA_F-serratus_M_contig1156.1291.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.540e-56
Identity = 98/119 (82.35%), Postives = 109/119 (91.60%), Query Frame = 1 
Query:    1 MAKTPSKKS-TKAPKKA--GGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+ +KA KK   G KK+S KR ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   35 MAKTPSKKAPSKAAKKPTDGAKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 153
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1156.1291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI8.550e-6996.55Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA3.530e-6287.07Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA4.680e-6288.89Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CJT3_9STRA3.180e-6088.89Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU3.950e-6084.48Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A485K2U0_9STRA4.630e-6084.75Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
B7FWR8_PHATC8.490e-6085.34Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA2.010e-5986.21Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A7R9ZTA9_9STRA2.940e-5785.22Histone H2B n=1 Tax=Craspedostauros australis TaxI... [more]
A0A7S2P1D6_9STRA1.540e-5682.35Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1156contigF-serratus_M_contig1156:125233..125583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.0
Seed ortholog evalue7.5e-53
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size351
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.4857855-CDS-F-serratus_M_contig1156:125232..1255831622929053.4857855-CDS-F-serratus_M_contig1156:125232..125583Fucus serratus maleCDSF-serratus_M_contig1156 125233..125583 +
1690962683.9381726-CDS-F-serratus_M_contig1156:125232..1255831690962683.9381726-CDS-F-serratus_M_contig1156:125232..125583Fucus serratus maleCDSF-serratus_M_contig1156 125233..125583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1156.1291.1prot_F-serratus_M_contig1156.1291.1Fucus serratus malepolypeptideF-serratus_M_contig1156 125233..125583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1156.1291.1

>prot_F-serratus_M_contig1156.1291.1 ID=prot_F-serratus_M_contig1156.1291.1|Name=mRNA_F-serratus_M_contig1156.1291.1|organism=Fucus serratus male|type=polypeptide|length=117bp
MAKTPSKKSTKAPKKAGGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
back to top

mRNA from alignment at F-serratus_M_contig1156:125233..125583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1156.1291.1 ID=mRNA_F-serratus_M_contig1156.1291.1|Name=mRNA_F-serratus_M_contig1156.1291.1|organism=Fucus serratus male|type=mRNA|length=351bp|location=Sequence derived from alignment at F-serratus_M_contig1156:125233..125583+ (Fucus serratus male)
ATGGCGAAGACCCCCTCGAAGAAGTCTACCAAGGCTCCCAAGAAAGCAGG
AGGCAAGAAGAAGTCCAACAAAAGGACTGAGTCATACTCTTCTTACATCT
ACAAGGTGCTCAAGCAGGTTCACCCGGACACGGGTATTTCAAAGCGCGGT
ATGTCCATCATGAATTCGTTCATCAACGATGTGTTCGAGCGAGTCGCCGG
CGAGTCGGGAAAGCTAACCCGCTACAACAAGAAGGCCACCCTGTCTTCGC
GGGAGGTGCAGACAGCTGTCCGACTTATGCTTCCTGGCGAGCTTGCCAAG
CACGCCGTTTCTGAGGGTACGAAGGCGGTCACCAAGTTCACCTCTTCCTG
A
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1156:125233..125583+

>mRNA_F-serratus_M_contig1156.1291.1 ID=mRNA_F-serratus_M_contig1156.1291.1|Name=mRNA_F-serratus_M_contig1156.1291.1|organism=Fucus serratus male|type=CDS|length=702bp|location=Sequence derived from alignment at F-serratus_M_contig1156:125233..125583+ (Fucus serratus male)
ATGGCGAAGACCCCCTCGAAGAAGTCTACCAAGGCTCCCAAGAAAGCAGG
AGGCAAGAAGAAGTCCAACAAAAGGACTGAGTCATACTCTTCTTACATCT
ACAAGGTGCTCAAGCAGGTTCACCCGGACACGGGTATTTCAAAGCGCGGT
ATGTCCATCATGAATTCGTTCATCAACGATGTGTTCGAGCGAGTCGCCGG
CGAGTCGGGAAAGCTAACCCGCTACAACAAGAAGGCCACCCTGTCTTCGC
GGGAGGTGCAGACAGCTGTCCGACTTATGCTTCCTGGCGAGCTTGCCAAG
CACGCCGTTTCTGAGGGTACGAAGGCGGTCACCAAGTTCACCTCTTCCTG
AATGGCGAAGACCCCCTCGAAGAAGTCTACCAAGGCTCCCAAGAAAGCAG
GAGGCAAGAAGAAGTCCAACAAAAGGACTGAGTCATACTCTTCTTACATC
TACAAGGTGCTCAAGCAGGTTCACCCGGACACGGGTATTTCAAAGCGCGG
TATGTCCATCATGAATTCGTTCATCAACGATGTGTTCGAGCGAGTCGCCG
GCGAGTCGGGAAAGCTAACCCGCTACAACAAGAAGGCCACCCTGTCTTCG
CGGGAGGTGCAGACAGCTGTCCGACTTATGCTTCCTGGCGAGCTTGCCAA
GCACGCCGTTTCTGAGGGTACGAAGGCGGTCACCAAGTTCACCTCTTCCT
GA
back to top