mRNA_F-serratus_M_contig1156.1281.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1156.1281.1
Unique NamemRNA_F-serratus_M_contig1156.1281.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1156.1281.1 vs. uniprot
Match: D7G0J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J1_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 3.300e-112
Identity = 171/238 (71.85%), Postives = 194/238 (81.51%), Query Frame = 1 
Query:    1 MSRDPVEARKELDELSEVFPSPDDVVSEGEEASDDEEYGHRRVPKERWGTIDGCTPNERFFARMQGAKQGERMTTAVKTQAEKNKFDREVFQFLITPEMRRQLGGHP-AIQAIDFDRFAEKWNEDVGEMERNEVAGRLEVSGDVNKKINRKAPFDLQNWWTESKKDINTARTVEQNKDCISAMYRRNRINLSKRSTADRAAVGVTETGAQFSFPFVHVDLKTLPRPAPSAADEARYDE 711
            MSRDP +ARKELD LSEVFP  D   SE E A+D EE   R  PK RWGT+DGCTPNERFFARMQGA  GERMTTAV TQAEK+KFDREVFQFL++PE+R+Q+ GH    Q+I+FD FA KWNEDVGE+ERNEVAGRLEVSGD NKKINRKAPFDLQ+WWTES+K++NTARTVEQNKD +SAMY +NR+ LS+ STA+RAAVG+T TG  FSFP VH    TLPRPAPSA     +DE
Sbjct:    1 MSRDPAQARKELDGLSEVFPLDDGDGSEDEGAADAEEDERRDAPKARWGTVDGCTPNERFFARMQGATPGERMTTAVITQAEKDKFDREVFQFLVSPEVRQQVAGHRRGTQSINFDAFAAKWNEDVGEIERNEVAGRLEVSGDANKKINRKAPFDLQSWWTESRKEVNTARTVEQNKDRLSAMYEKNRVRLSEPSTAERAAVGMTITGQTFSFPLVHNGRSTLPRPAPSATGGPEHDE 238
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1156.1281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0J1_ECTSI3.300e-11271.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1156contigF-serratus_M_contig1156:50289..51496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size711
Cds size711
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.0015893-CDS-F-serratus_M_contig1156:50288..504641622929053.0015893-CDS-F-serratus_M_contig1156:50288..50464Fucus serratus maleCDSF-serratus_M_contig1156 50289..50464 +
1690962683.8029046-CDS-F-serratus_M_contig1156:50288..504641690962683.8029046-CDS-F-serratus_M_contig1156:50288..50464Fucus serratus maleCDSF-serratus_M_contig1156 50289..50464 +
1622929053.013437-CDS-F-serratus_M_contig1156:50961..514961622929053.013437-CDS-F-serratus_M_contig1156:50961..51496Fucus serratus maleCDSF-serratus_M_contig1156 50962..51496 +
1690962683.8109162-CDS-F-serratus_M_contig1156:50961..514961690962683.8109162-CDS-F-serratus_M_contig1156:50961..51496Fucus serratus maleCDSF-serratus_M_contig1156 50962..51496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1156.1281.1prot_F-serratus_M_contig1156.1281.1Fucus serratus malepolypeptideF-serratus_M_contig1156 50289..51496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1156.1281.1

>prot_F-serratus_M_contig1156.1281.1 ID=prot_F-serratus_M_contig1156.1281.1|Name=mRNA_F-serratus_M_contig1156.1281.1|organism=Fucus serratus male|type=polypeptide|length=237bp
MSRDPVEARKELDELSEVFPSPDDVVSEGEEASDDEEYGHRRVPKERWGT
IDGCTPNERFFARMQGAKQGERMTTAVKTQAEKNKFDREVFQFLITPEMR
RQLGGHPAIQAIDFDRFAEKWNEDVGEMERNEVAGRLEVSGDVNKKINRK
APFDLQNWWTESKKDINTARTVEQNKDCISAMYRRNRINLSKRSTADRAA
VGVTETGAQFSFPFVHVDLKTLPRPAPSAADEARYDE
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mRNA from alignment at F-serratus_M_contig1156:50289..51496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1156.1281.1 ID=mRNA_F-serratus_M_contig1156.1281.1|Name=mRNA_F-serratus_M_contig1156.1281.1|organism=Fucus serratus male|type=mRNA|length=1208bp|location=Sequence derived from alignment at F-serratus_M_contig1156:50289..51496+ (Fucus serratus male)
ATGTCGCGGGATCCTGTCGAAGCGCGCAAGGAGCTGGATGAGCTTTCCGA
GGTCTTCCCTAGCCCCGACGACGTTGTATCGGAAGGCGAGGAGGCATCTG
ATGACGAAGAGTATGGACACCGCCGTGTACCCAAGGAGAGGTGGGGAACT
ATCGATGGATGCACCCCAAATGAGCGGTGAGTCTTTCAACTGAGAGCACT
GTCCATCTACTACTAGAGTAAATCTCTTCTACTCCACCCGCACAGTTTGG
GTGAAAAGTATCGAGTTCCCCCGGATCATTTGTTTCCTTCTTTTTTGCTG
CGCCTCCTTCTTCAGTTACACAGATTTTTTCCTCCCGATTGTTTTGGGGG
GTATGGTCTAAAGTCGTCAAAGCAGGTGTTTGCTGGTAGATGCCGCTCAG
TGGTCCAAAATCATCTTACGAAGGAAGAAAGGGGGGTGTCGTGTTATTTT
TCAAAAGCACGCAATCTGTGGGATGTTCTCTCGAGGCTACTGCTTCATTC
TATAGATCGCCCCCCTCACTCGAATGTTCCCCCAGCGCTGCGAACCAATC
TAGTGGCTCAAGTTTACGGCGGTCGGTTTTGCTTTTCTTCTGACCTCCAT
TACGCCGGATACACGAAACTACCCATTGCTGCACTTGGTGATGGACTCGT
TTCGTGTGTTGGTCGGCTCGCAGCTTCTTTGCTCGGATGCAAGGTGCAAA
ACAAGGAGAGCGCATGACTACTGCCGTCAAGACTCAAGCAGAAAAAAACA
AGTTCGATCGCGAAGTTTTTCAGTTCTTGATCACCCCGGAGATGAGGCGG
CAACTTGGTGGTCATCCTGCGATCCAAGCCATCGACTTCGATCGTTTTGC
GGAGAAGTGGAACGAGGACGTCGGCGAAATGGAGAGAAACGAGGTGGCCG
GTCGCTTGGAAGTCAGCGGCGATGTCAATAAGAAGATCAACCGCAAGGCG
CCTTTCGACCTGCAGAACTGGTGGACCGAATCAAAGAAAGACATCAACAC
CGCGCGCACGGTGGAGCAGAACAAAGACTGCATATCAGCGATGTACCGAA
GAAATCGCATCAATCTTTCAAAGCGAAGCACCGCGGACCGAGCAGCCGTC
GGCGTGACCGAAACGGGAGCCCAATTTTCCTTCCCATTCGTACACGTCGA
TCTCAAAACTCTACCACGGCCCGCCCCTTCGGCCGCCGATGAAGCTCGAT
ACGATGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1156:50289..51496+

>mRNA_F-serratus_M_contig1156.1281.1 ID=mRNA_F-serratus_M_contig1156.1281.1|Name=mRNA_F-serratus_M_contig1156.1281.1|organism=Fucus serratus male|type=CDS|length=1422bp|location=Sequence derived from alignment at F-serratus_M_contig1156:50289..51496+ (Fucus serratus male)
ATGTCGCGGGATCCTGTCGAAGCGCGCAAGGAGCTGGATGAGCTTTCCGA
GGTCTTCCCTAGCCCCGACGACGTTGTATCGGAAGGCGAGGAGGCATCTG
ATGACGAAGAGTATGGACACCGCCGTGTACCCAAGGAGAGGTGGGGAACT
ATCGATGGATGCACCCCAAATGAGCGATGTCGCGGGATCCTGTCGAAGCG
CGCAAGGAGCTGGATGAGCTTTCCGAGGTCTTCCCTAGCCCCGACGACGT
TGTATCGGAAGGCGAGGAGGCATCTGATGACGAAGAGTATGGACACCGCC
GTGTACCCAAGGAGAGGTGGGGAACTATCGATGGATGCACCCCAAATGAG
CGCTTCTTTGCTCGGATGCAAGGTGCAAAACAAGGAGAGCGCATGACTAC
TGCCGTCAAGACTCAAGCAGAAAAAAACAAGTTCGATCGCGAAGTTTTTC
AGTTCTTGATCACCCCGGAGATGAGGCGGCAACTTGGTGGTCATCCTGCG
ATCCAAGCCATCGACTTCGATCGTTTTGCGGAGAAGTGGAACGAGGACGT
CGGCGAAATGGAGAGAAACGAGGTGGCCGGTCGCTTGGAAGTCAGCGGCG
ATGTCAATAAGAAGATCAACCGCAAGGCGCCTTTCGACCTGCAGAACTGG
TGGACCGAATCAAAGAAAGACATCAACACCGCGCGCACGGTGGAGCAGAA
CAAAGACTGCATATCAGCGATGTACCGAAGAAATCGCATCAATCTTTCAA
AGCGAAGCACCGCGGACCGAGCAGCCGTCGGCGTGACCGAAACGGGAGCC
CAATTTTCCTTCCCATTCGTACACGTCGATCTCAAAACTCTACCACGGCC
CGCCCCTTCGGCCGCCGATGAAGCTCGATACGATGAGCTTCTTTGCTCGG
ATGCAAGGTGCAAAACAAGGAGAGCGCATGACTACTGCCGTCAAGACTCA
AGCAGAAAAAAACAAGTTCGATCGCGAAGTTTTTCAGTTCTTGATCACCC
CGGAGATGAGGCGGCAACTTGGTGGTCATCCTGCGATCCAAGCCATCGAC
TTCGATCGTTTTGCGGAGAAGTGGAACGAGGACGTCGGCGAAATGGAGAG
AAACGAGGTGGCCGGTCGCTTGGAAGTCAGCGGCGATGTCAATAAGAAGA
TCAACCGCAAGGCGCCTTTCGACCTGCAGAACTGGTGGACCGAATCAAAG
AAAGACATCAACACCGCGCGCACGGTGGAGCAGAACAAAGACTGCATATC
AGCGATGTACCGAAGAAATCGCATCAATCTTTCAAAGCGAAGCACCGCGG
ACCGAGCAGCCGTCGGCGTGACCGAAACGGGAGCCCAATTTTCCTTCCCA
TTCGTACACGTCGATCTCAAAACTCTACCACGGCCCGCCCCTTCGGCCGC
CGATGAAGCTCGATACGATGAG
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