mRNA_F-serratus_M_contig1151.1272.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1151.1272.1 vs. uniprot
Match: A0A6H5JAA6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA6_9PHAE) HSP 1 Score: 484 bits (1246), Expect = 3.860e-140 Identity = 345/809 (42.65%), Postives = 435/809 (53.77%), Query Frame = 2
Query: 1538 VSALSALEGEGFASDDFQCNICWEMLARPVTLVCGHTACEACMAKYLRTQAHAQARLGNIRANRIACPAGCQRMIPLALPEVTTLIQKLLIKAFPRAYRARLEEANADNVLVTQVRRIAEEAAAESXXXXXRPVHPLGGVLGPGGVGDGG----GGGVPDFIAFGNAPPDFLPGLRGQQNAARFRLDVAVPNGDFPRVVSRWYKRMGMCLFVFLCLSWQHQRAMGGGDLLQHPGLSFLRGAGRSRGAARVADTGYASSSISSSSRANGGVCSASGDGSAEDEDSGEGSDSCASYEDPAGKG---ATSETGFHGGERRWLFSMELNLQEFVARNRWVALRSFYPLNNPWSSSLYLYFDDPILVTHPQRPAPTQTXXXXXXXXXSPLSSGDQGVPKEEAFSSKTSRVGEEGAVSTDGAVDFAGRKSTADGADTLPQTGDDGEVGTVDVYVEGLIAAKTAAEEHGGNIDPLAPSGRAVGQNGVGVGDGDDAGD-------------------------------------------------------------------GERGKPRRMFLEFYGPIVDIFLGLGFPAWLSEVLTVVAAQLCPLLEVAPLLRLSTRTAGSAGSAAGVDVGLVGSTIDEVLSLNFSLDLVIYGVFKLVLLTLAFWRSKWGWLMWLRAQPRDRGARVWRVLLLSCAGF-VAREFFMIKVVFPLVEHVVFGYLLQWPSRYLLAWAVISLRVGLMKLIVMLQMVMLMLSLFLPQGTLHSMETLWCHMFTHLLLGTRFYNTFFVGEADGRRRQL----ARRLARAMR 3727
V ++A EG DDFQCNICWEMLARPVTL CGHTACE+CMAKYLR QA AQA++GN+RANRI+CPAGCQRMIPL LPEVTT++QKLL + FP AYR RL+E + LV+QVRRIA++A XXXXX + GG + + FGN PP F+ GL GQQNAARFRLDVAVP + P V+RWYK MG+ LF LC+SWQ+ G G L HP L+F R ++ A T +S + A G V SGD C+ D A KG S G GG W FSME+N+QE++A NRW ALRSF+P + WS L+LY +DPIL+T P XXXXXXXXX A S K RVG G S+ A +G ST P T +VG + + ++ +HG DD + GE + RR+FLEF+GP+V +F LG PAWLSE+LTVVAAQLCPLL PLLRLS R+ AG G + D+++SL+FSLDL IY VF L + T WR W + R +PR R + LLL+ A F + RE MIKV FP++EH++F Y+LQW RYLLAW +S+RV +++L+ L++ +LM + +P+G LH++E +WCH+FT+LLLGTRF+NTFFVG DG RR + ARR RAMR
Sbjct: 426 VGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNVRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPSAYRERLQETEPERALVSQVRRIADDAXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXLGGMAREVVGFGNVPPGFMQGLHGQQNAARFRLDVAVPQREIPPTVARWYKYMGLALFACLCVSWQYPGTTGEG--LWHPSLAFWR---KNNEPAVTVTTSASSHQCVAEGGAGGAV---SGD--------------CSVASDGAEKGEFAGGSSEGNSGGSWGWPFSMEMNVQEYIAHNRWNALRSFHPSTSAWSGPLFLYLEDPILLT-PSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-SKKGPRVGRGG--SSGSASPPSGWLSTL----AWPVTYSLRKVGVLSSPAN--TSEDSSGNDHGAXXXXXXXXXXXXXXXXXXXXXXDDRHECGHASFGXXXXXXXXXXXEVCWREGKEAPAEVSSPVESYSAEXXXXXXXXXXXXXXXXXXXXXEGAAGESQQQRRIFLEFFGPVVGVFAALGLPAWLSELLTVVAAQLCPLLAAMPLLRLSPRSTKGAG----------GDSADDLVSLDFSLDLAIYAVFTLAITTATLWRFTWK--SFKRDRPRSRSLK----LLLTAAAFHLVREVAMIKVAFPIIEHLLFHYVLQWRRRYLLAWLALSIRVFIIRLLACLRVALLMATPLVPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVG--DGPRRHVGGRAARRWVRAMR 1184
BLAST of mRNA_F-serratus_M_contig1151.1272.1 vs. uniprot
Match: D7G4J4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J4_ECTSI) HSP 1 Score: 432 bits (1111), Expect = 3.080e-126 Identity = 324/792 (40.91%), Postives = 412/792 (52.02%), Query Frame = 2
Query: 1538 VSALSALEGEGFASDDFQCNICWEMLARPVTLVCGHTACEACMAKYLRTQAHAQARLGNIRANRIACPAGCQRMIPLALPEVTTLIQKLLIKAFPRAYRARLEEANADNVLVTQVRRIAEEAAAESXXXXXRPVHPLGGVLGP-----------GGVGDGGGGGVPDFIAFGNAPPDFLPGLRGQQNAARFRLDVAVPNGDFPRVVSRWYKRMGMCLFVFLCLSWQHQRAMGGGDLLQHPGLSFLRGAGRSRGAARVADTGYASSSISSSSRANGGVCSASGDGSAEDEDSGEGSDSCASYEDPAGKGATSETGFH---GGERRWLFSMELNLQEFVARNRWVALRSFYPLNNPWSSSLYLYFDDPILVTHPQRPAPTQTXXXXXXXXXSPLSSGDQGVPKEEAFSSKTSRVGEEGAVSTDG-AVDFAGRKS--TADGADTLPQT-----------------------------GDDGEVGTVDVYVEGLIAA-----------KTAAEEHGGNIDPL-APSGRAVGQNGVGVGDGDDAGDGERGKPRRMFLEFYGPIVDIFLGLGFPAWLSEVLTVVAAQLCPLLEVAPLLRLSTRTAGSAGSAAGVDVGLVGSTIDEVLSLNFSLDLVIYGVFKLVLLTLAFWRSKWGWLMWLRAQPRDRGARVWRVLLLSCAGFVAREFFMIKVVFPLVEHVVFGYLLQWPSRYLLAWAVISLRVGLMKLIVMLQMVMLMLSLFLPQGTLHSMETLWCHMFTHLLLGTRFYNTFFVGEADGRRRQL----ARRLARAMR 3727
V ++A EG DDFQCNICWEMLARPVTL CGHTACE+CMAKYLR QA AQA++GN+RANRI+CPAGCQRMIPL LPEVTT++QKLL + FP AYR RL+E + LV+QVRRIA++A XXXXX + GGV + + FGN PP F+ GL GQQNAARFR ++ W K + V S HQ GGG D G G CS + DG A KG +E GG WLFSME+N+QE++A NRW ALRSF+P +PWS L+LY +DP+L+T P+ XXXXXXXXX +G P+ S S G +ST V ++ RK + A+T + GD E G V K A EE + A S G + GE + RR+FLEF+GP+V +F LG PAWLSE+LTVVAAQLCPLL PLLRLS R+ G G + D+++SL+FSLDL IY VF L + T+ WR W + R QPR R ++ LL + A + RE MIKV FP++EH++F Y+LQW RYLL W +S+RV +++L+ L++ +LM + F+P+G LH++E +WCH+FT+LLLGTRF+NTFFVG DG RR + ARR RAMR
Sbjct: 171 VGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPSAYRERLQETEPERALVSQVRRIADDAXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXLGGV-------AREVVGFGNVPPGFMQGLHGQQNAARFRS------------LAFWRKNNEPAVTVTTSAS-GHQCVAGGG----------------------AGDAGS-------------GDCSVANDG--------------------AEKGEFAEVSSEEGGGGAWCWLFSMEMNVQEYIAHNRWNALRSFHPSTSPWSGPLFLYLEDPVLLT----PSXXXXXXXXXXXXXXXXXXSKKG-PRVGGDGSSDSASPPSGWLSTLAWPVTYSLRKIGVLSSPANTSEDSSGXXXXXXXXXXXXXXXXXXXXXXXXVSDGDRHECGHASVDGXXXXCCGEDNEVCWREGKKAPEEVSSPAERFSAESXXXXXXXXXXXXXGAEGAAGEPQQQRRIFLEFFGPVVGVFAALGLPAWLSELLTVVAAQLCPLLAAMPLLRLSPRSTK----------GAEGDSADDLVSLDFSLDLAIYAVFTLAIATVTLWRFTWK--TFKRDQPRSRTLKL---LLTAAASHLVREVVMIKVAFPIIEHLLFHYVLQWRRRYLLTWLALSIRVFIIRLLACLRVALLMATPFVPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVG--DGPRRHVGGRAARRWVRAMR 865
BLAST of mRNA_F-serratus_M_contig1151.1272.1 vs. uniprot
Match: A0A836CBF7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBF7_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.720e-7 Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 2
Query: 1592 CNICWEMLARPVTLVCGHTACEACMAKYLRTQAHAQARLGNIRANRI---ACPAGCQRMIPLALPEVTTLIQKLLIKAFPRAYRARLEEANAD 1861
C IC E+L RPVTL CGHTACE C A++L + R A + ACPAGC + LALP V+ ++ K++ A + R +A+ D
Sbjct: 291 CPICLELLYRPVTLPCGHTACELCFARFLTPFTPSTRRRAGASARALGDPACPAGCSTPLALALPAVSCVLAKVIDARPLDAAQRRARDAHYD 383 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1151.1272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1151.1272.1 >prot_F-serratus_M_contig1151.1272.1 ID=prot_F-serratus_M_contig1151.1272.1|Name=mRNA_F-serratus_M_contig1151.1272.1|organism=Fucus serratus male|type=polypeptide|length=1361bp MNEDIQGAGASPPTPSLASSPPAPRQQQQQQHQRQQDATFPAPHNKRKRSback to top mRNA from alignment at F-serratus_M_contig1151:214278..273704+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1151.1272.1 ID=mRNA_F-serratus_M_contig1151.1272.1|Name=mRNA_F-serratus_M_contig1151.1272.1|organism=Fucus serratus male|type=mRNA|length=59427bp|location=Sequence derived from alignment at F-serratus_M_contig1151:214278..273704+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1151:214278..273704+ >mRNA_F-serratus_M_contig1151.1272.1 ID=mRNA_F-serratus_M_contig1151.1272.1|Name=mRNA_F-serratus_M_contig1151.1272.1|organism=Fucus serratus male|type=CDS|length=8166bp|location=Sequence derived from alignment at F-serratus_M_contig1151:214278..273704+ (Fucus serratus male)back to top |