mRNA_F-serratus_M_contig115.1267.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig115.1267.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE) HSP 1 Score: 184 bits (468), Expect = 1.040e-54 Identity = 100/215 (46.51%), Postives = 133/215 (61.86%), Query Frame = 1
Query: 16 YRPLVGSLMRLSVTTRPDIDNALRACARHSHNPSARHWKALQQIAAYVNFLKEIGLKFVLGSCLKL--TVFADADYAAAPNDRRPVSGVAVILGDTAIGWKSSTQKCVTTVACEAEYVALYDTSKEALFMRAVLVFLQPELTGMRVDVFGHNEGAKAIANNPSSASRSKHIDLKLHLIRGSVCAGDVRVLDVRTAEQHADVLIKPLWRKKFMLHR 654
+R +VGSLM ++ TR DI NA+RA ARHSH P HWKA Q+I Y+ + LKF S + + V+ DAD+A+ DRR VSG V + + W S TQKCV+ EAEY+A+ D KEALF+ +L FL+P + ++DV NEGA A+A NP S+SRSKHID++ H +R G + V V + EQHAD+L K L R F +HR
Sbjct: 36 FREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHR 250
BLAST of mRNA_F-serratus_M_contig115.1267.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE) HSP 1 Score: 183 bits (465), Expect = 2.150e-53 Identity = 99/215 (46.05%), Postives = 132/215 (61.40%), Query Frame = 1
Query: 16 YRPLVGSLMRLSVTTRPDIDNALRACARHSHNPSARHWKALQQIAAYVNFLKEIGLKFVLGSCLKLT--VFADADYAAAPNDRRPVSGVAVILGDTAIGWKSSTQKCVTTVACEAEYVALYDTSKEALFMRAVLVFLQPELTGMRVDVFGHNEGAKAIANNPSSASRSKHIDLKLHLIRGSVCAGDVRVLDVRTAEQHADVLIKPLWRKKFMLHR 654
+R +VGSLM ++ TRPDI NALRA RHSH P HWKA Q+I Y+ + LKF + + + V+ DAD+A+ NDRR VSG V++ + W S TQKCV+ EAEY A+ D K+ALF+ +L FL+P ++DV NE A A+A NP S+SRSKHID++ H +R G + V V + EQHAD+L K L R F +HR
Sbjct: 107 FREVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQFLRPSANPRKIDVLEDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHR 321
BLAST of mRNA_F-serratus_M_contig115.1267.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE) HSP 1 Score: 192 bits (487), Expect = 2.960e-53 Identity = 101/223 (45.29%), Postives = 141/223 (63.23%), Query Frame = 1
Query: 4 EFPLYRPLVGSLMRLSVTTRPDIDNALRACARHSHNPSARHWKALQQIAAYVNFLKEIGLKFVLGSCLKLTVFADADYAAAPNDRRPVSGVAVILGDTAIGWKSSTQKCVTTVACEAEYVALYDTSKEALFMRAVLVFLQPELTGMRVDVFGHNEGAKAIANNPSSASRSKHIDLKLHLIRGSVCAGDVRVLDVRTAEQHADVLIKPLWRKKFMLHRAALMNL 672
E+P+ R +GS+M +S +RPD+ A+RA ARH+H P+ RHW A+Q+I Y+ +++G+ + GS L L V+ DA YA DRR VSG+A +G T + S TQ V+ + EAEY+A + KEALF+RAVL+F+ PE G + V N+GA A+ NP S+ R+ HID++ H IRG +GD+ V V T EQHAD+L K L + HR LMNL
Sbjct: 535 EWPV-REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMALVQNPLSSGRTTHIDVRFHFIRGLFGSGDISVKFVPTTEQHADLLTKALRKASLQYHRRKLMNL 755
BLAST of mRNA_F-serratus_M_contig115.1267.1 vs. uniprot
Match: A0A6H5J8M4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M4_9PHAE) HSP 1 Score: 179 bits (453), Expect = 1.110e-52 Identity = 96/216 (44.44%), Postives = 132/216 (61.11%), Query Frame = 1
Query: 16 YRPLVGSLMRLSVTTRPDIDNALRACARHSHNPSARHWKALQQIAAYVNFLKEIGLKFVLGSCLK---LTVFADADYAAAPNDRRPVSGVAVILGDTAIGWKSSTQKCVTTVACEAEYVALYDTSKEALFMRAVLVFLQPELTGMRVDVFGHNEGAKAIANNPSSASRSKHIDLKLHLIRGSVCAGDVRVLDVRTAEQHADVLIKPLWRKKFMLHR 654
+R +VG LM ++ TRPDI NA+RA ARHSH P R WKA Q+I Y+ + LK+ S + V+ DAD+A+ DRR VSG VI+ + W S TQKCV+ EAEY+A+ D KE+LF+ +L FL+P + ++DV NEGA A+A NP S+ RSKHID++ H +R G + + V + +QHAD+L K L R F +HR
Sbjct: 17 FREVVGCLMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYLLATAHLTLKYKRDSTVDDVGTLVYVDADFASKATDRRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAENPLSSCRSKHIDVRHHFLRNLTEEGVIEITHVPSEKQHADILTKALPRSIFEVHR 232
BLAST of mRNA_F-serratus_M_contig115.1267.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE) HSP 1 Score: 178 bits (451), Expect = 1.860e-52 Identity = 96/222 (43.24%), Postives = 131/222 (59.01%), Query Frame = 1
Query: 16 YRPLVGSLMRLSVTTRPDIDNALRACARHSHNPSARHWKALQQIAAYVNFLKEIGLKFVLGSCLKL--TVFADADYAAAPNDRRPVSGVAVILGDTAIGWKSSTQKCVTTVACEAEYVALYDTSKEALFMRAVLVFLQPELTGMRVDVFGHNEGAKAIANNPSSASRSKHIDLKLHLIRGSVCAGDVRVLDVRTAEQHADVLIKPLWRKKFMLHRAALMNLS 675
+R +VG LM ++ TRPDI NA+RA ARHSH P HWKA Q+I Y+ + L F S + + V+ AD+A+ DRR VSG V + + W S TQKCV EAEY+A+ D KEALF +L FL+P + V NEGA A+A+NP S+ R KHID++ H +R G +++ V + EQHAD+L K L R+ F +HR ++ LS
Sbjct: 11 FREVVGCLMWIACQTRPDISNAVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVAADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVHRNFVLGLS 232
BLAST of mRNA_F-serratus_M_contig115.1267.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 189 bits (480), Expect = 9.710e-52 Identity = 101/215 (46.98%), Postives = 135/215 (62.79%), Query Frame = 1
Query: 16 YRPLVGSLMRLSVTTRPDIDNALRACARHSHNPSARHWKALQQIAAYVNFLKEIGLKFVLGSCLKLT--VFADADYAAAPNDRRPVSGVAVILGDTAIGWKSSTQKCVTTVACEAEYVALYDTSKEALFMRAVLVFLQPELTGMRVDVFGHNEGAKAIANNPSSASRSKHIDLKLHLIRGSVCAGDVRVLDVRTAEQHADVLIKPLWRKKFMLHR 654
+R +VGSLM ++ TRPDI NA+RA ARHSH P HWKA Q+I Y+ + LKF + + + V+ DAD+A+ NDRR VSG V++ + W S TQKCV+ EAEY+A+ D KEALF+ +L FL+P ++DV NEGA A+A NP S+SRSKHID++ H +R G + V V + EQHAD+L K L R F +HR
Sbjct: 738 FREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHR 952
BLAST of mRNA_F-serratus_M_contig115.1267.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 189 bits (480), Expect = 1.330e-51 Identity = 101/215 (46.98%), Postives = 135/215 (62.79%), Query Frame = 1
Query: 16 YRPLVGSLMRLSVTTRPDIDNALRACARHSHNPSARHWKALQQIAAYVNFLKEIGLKFVLGSCLKLT--VFADADYAAAPNDRRPVSGVAVILGDTAIGWKSSTQKCVTTVACEAEYVALYDTSKEALFMRAVLVFLQPELTGMRVDVFGHNEGAKAIANNPSSASRSKHIDLKLHLIRGSVCAGDVRVLDVRTAEQHADVLIKPLWRKKFMLHR 654
+R +VGSLM ++ TRPDI NA+RA ARHSH P HWKA Q+I Y+ + LKF + + + V+ DAD+A+ NDRR VSG V++ + W S TQKCV+ EAEY+A+ D KEALF+ +L FL+P ++DV NEGA A+A NP S+SRSKHID++ H +R G + V V + EQHAD+L K L R F +HR
Sbjct: 1005 FREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHR 1219
BLAST of mRNA_F-serratus_M_contig115.1267.1 vs. uniprot
Match: A0A6H5JTP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP8_9PHAE) HSP 1 Score: 176 bits (445), Expect = 7.870e-51 Identity = 93/215 (43.26%), Postives = 130/215 (60.47%), Query Frame = 1
Query: 16 YRPLVGSLMRLSVTTRPDIDNALRACARHSHNPSARHWKALQQIAAYVNFLKEIGLKFVLGSCLKL--TVFADADYAAAPNDRRPVSGVAVILGDTAIGWKSSTQKCVTTVACEAEYVALYDTSKEALFMRAVLVFLQPELTGMRVDVFGHNEGAKAIANNPSSASRSKHIDLKLHLIRGSVCAGDVRVLDVRTAEQHADVLIKPLWRKKFMLHR 654
+R +VG LM ++ TRP+ NA+R ARHSH P WKA Q+I +Y+ + LK+ + + + V+ DAD+A+ DRR VSG V + + W + TQKCV+ EAEY+A+ D KEALF+ +L FL+P ++DVF NEGA A+A NP S+SRSKHID++ H +R G + V V + QHAD+L K L R F +HR
Sbjct: 68 FREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVRVAGCLVSWFAWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKVQHADILTKALPRNLFEVHR 282
BLAST of mRNA_F-serratus_M_contig115.1267.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE) HSP 1 Score: 178 bits (452), Expect = 8.090e-51 Identity = 94/215 (43.72%), Postives = 130/215 (60.47%), Query Frame = 1
Query: 16 YRPLVGSLMRLSVTTRPDIDNALRACARHSHNPSARHWKALQQIAAYVNFLKEIGLKFVLGSCLKL--TVFADADYAAAPNDRRPVSGVAVILGDTAIGWKSSTQKCVTTVACEAEYVALYDTSKEALFMRAVLVFLQPELTGMRVDVFGHNEGAKAIANNPSSASRSKHIDLKLHLIRGSVCAGDVRVLDVRTAEQHADVLIKPLWRKKFMLHR 654
+R +VG LM ++ TRP+ NA+R ARHSH P WKA Q+I +Y+ + LK+ + + + V+ DAD+A+ DRR VSG V++ + W S TQKCV+ EAEY+A+ D KEA F+ +L FL+P ++DVF NEGA A+A NP S+SRSKHID++ H +R G + V V + EQHAD+L K L R F HR
Sbjct: 163 FREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEFHR 377
BLAST of mRNA_F-serratus_M_contig115.1267.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 184 bits (468), Expect = 5.500e-50 Identity = 100/215 (46.51%), Postives = 133/215 (61.86%), Query Frame = 1
Query: 16 YRPLVGSLMRLSVTTRPDIDNALRACARHSHNPSARHWKALQQIAAYVNFLKEIGLKFVLGSCLKL--TVFADADYAAAPNDRRPVSGVAVILGDTAIGWKSSTQKCVTTVACEAEYVALYDTSKEALFMRAVLVFLQPELTGMRVDVFGHNEGAKAIANNPSSASRSKHIDLKLHLIRGSVCAGDVRVLDVRTAEQHADVLIKPLWRKKFMLHR 654
+R +VGSLM ++ TR DI NA+RA ARHSH P HWKA Q+I Y+ + LKF S + + V+ DAD+A+ DRR VSG V + + W S TQKCV+ EAEY+A+ D KEALF+ +L FL+P + ++DV NEGA A+A NP S+SRSKHID++ H +R G + V V + EQHAD+L K L R F +HR
Sbjct: 1179 FREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHR 1393 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig115.1267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig115.1267.1 >prot_F-serratus_M_contig115.1267.1 ID=prot_F-serratus_M_contig115.1267.1|Name=mRNA_F-serratus_M_contig115.1267.1|organism=Fucus serratus male|type=polypeptide|length=226bp DEFPLYRPLVGSLMRLSVTTRPDIDNALRACARHSHNPSARHWKALQQIAback to top mRNA from alignment at F-serratus_M_contig115:772482..773159- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig115.1267.1 ID=mRNA_F-serratus_M_contig115.1267.1|Name=mRNA_F-serratus_M_contig115.1267.1|organism=Fucus serratus male|type=mRNA|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig115:772482..773159- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig115:772482..773159- >mRNA_F-serratus_M_contig115.1267.1 ID=mRNA_F-serratus_M_contig115.1267.1|Name=mRNA_F-serratus_M_contig115.1267.1|organism=Fucus serratus male|type=CDS|length=1356bp|location=Sequence derived from alignment at F-serratus_M_contig115:772482..773159- (Fucus serratus male)back to top |