mRNA_F-serratus_M_contig115.1262.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig115.1262.1
Unique NamemRNA_F-serratus_M_contig115.1262.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig115.1262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig115contigF-serratus_M_contig115:554697..555871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size581
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig115.1262.1prot_F-serratus_M_contig115.1262.1Fucus serratus malepolypeptideF-serratus_M_contig115 554697..554996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929048.304021-CDS-F-serratus_M_contig115:554696..5549961622929048.304021-CDS-F-serratus_M_contig115:554696..554996Fucus serratus maleCDSF-serratus_M_contig115 554697..554996 -
1690962681.5618243-CDS-F-serratus_M_contig115:554696..5549961690962681.5618243-CDS-F-serratus_M_contig115:554696..554996Fucus serratus maleCDSF-serratus_M_contig115 554697..554996 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929048.3195837-UTR-F-serratus_M_contig115:554996..5552091622929048.3195837-UTR-F-serratus_M_contig115:554996..555209Fucus serratus maleUTRF-serratus_M_contig115 554997..555209 -
1690962681.5720217-UTR-F-serratus_M_contig115:554996..5552091690962681.5720217-UTR-F-serratus_M_contig115:554996..555209Fucus serratus maleUTRF-serratus_M_contig115 554997..555209 -
1622929048.33144-UTR-F-serratus_M_contig115:555804..5558711622929048.33144-UTR-F-serratus_M_contig115:555804..555871Fucus serratus maleUTRF-serratus_M_contig115 555805..555871 -
1690962681.5902221-UTR-F-serratus_M_contig115:555804..5558711690962681.5902221-UTR-F-serratus_M_contig115:555804..555871Fucus serratus maleUTRF-serratus_M_contig115 555805..555871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig115.1262.1

>prot_F-serratus_M_contig115.1262.1 ID=prot_F-serratus_M_contig115.1262.1|Name=mRNA_F-serratus_M_contig115.1262.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MSSKNWVRYGHRAFVCRERGGWQCDDPPPAPRPLHLHLHLHALLGCWVLL
GAMRAPFGYFASSRKMDELKLFVGEVPVTLRYSQSLNDEAFLGGLFSAAS
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mRNA from alignment at F-serratus_M_contig115:554697..555871-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig115.1262.1 ID=mRNA_F-serratus_M_contig115.1262.1|Name=mRNA_F-serratus_M_contig115.1262.1|organism=Fucus serratus male|type=mRNA|length=1175bp|location=Sequence derived from alignment at F-serratus_M_contig115:554697..555871- (Fucus serratus male)
TAAGCAGAGTATGATGATGGGTGGTATGGATGGGGGGCAGCATGGCATGC
ACCGCGGCGCCACCATGGTGAGAGACGAGTCCGATTTTTCGATTTTCGAT
TGGGGTAATGTCGGTTCTCGTGACGGTATAAGTATGCGACGTTTTCAGAT
ATGTATGTGATGTTTTCCGGCATCACAGTGATGGGAAATGTCGAGGGAGG
TGATGGATGGCGTTCGAGATGGCTCCTTCTTATCTTCTATTTAGCAGCAG
AAGCGTGCCGGTCTACCCAGGCTTGCAGGAAAGATTTTTTGGCCATGGAA
ACTATCGTGCGCATTCGGGACCCGTGCTCGGTTTGTTGCATTCCCCTCCC
CTCCCACTCTTCACCCGTTTCTATCGAAGAATTGCGGCGCGGTTACTCCC
TTTCCCCGGCAGTTTATTCTTTCACAACGCTCAAGCGACGGTGTAAAGAT
TTTGCTTCTGTAGCTAGAACTACCCCCCCTACCCCCCCTCATTTTCTCCT
CTGCCTCTTCCTCATCTATGTCCGCCTCCGCTATCCTTCCCCTCGCGTGA
TGCGTGTTTGTGGCTGCTTTTTCAACGCCTCCGCCTTTCTCGCGCGCGGA
AATCTCACACGGATCCACTAAAATGTGCTTGGAACGCGCACCATCATTGC
AAATCTCAACAGCAGCAGCAGCAGCGACAGCGACACCAACAGTTTCCAGG
TCAGGGTTGAGGCACATTCGGAAGTGCGCTCTCGCCGTAACCCCCTGAGT
GGCTCCCCTATGTTGGCCGTTGGCTTCCTTGTGTCGGTTCGCGTTCCAGA
GTAGAGTTGAAAGCTGTTCGGGCGGGGTGAATGGGGGGGGTGGATCAGTA
GCAGACGCGAGCATTCTGAGGGTAAATGTCATCGAAGAACTGGGTCAGGT
ATGGCCATCGCGCCTTCGTGTGTAGAGAGAGGGGGGGGTGGCAGTGTGAT
GACCCACCACCCGCCCCCCGTCCTCTTCATCTTCATCTTCATCTTCACGC
CCTGCTTGGTTGCTGGGTCTTGTTGGGTGCGATGCGTGCACCATTTGGTT
ATTTTGCTTCGTCCAGGAAGATGGATGAGTTGAAGCTATTCGTGGGCGAG
GTGCCAGTAACGCTGCGGTACAGTCAGTCCCTCAATGACGAAGCTTTTCT
CGGTGGCCTTTTTTCCGCTGCTTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig115:554697..555871-

>mRNA_F-serratus_M_contig115.1262.1 ID=mRNA_F-serratus_M_contig115.1262.1|Name=mRNA_F-serratus_M_contig115.1262.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig115:554697..555871- (Fucus serratus male)
ATGTCATCGAAGAACTGGGTCAGGTATGGCCATCGCGCCTTCGTGTGTAG
AGAGAGGGGGGGGTGGCAGTGTGATGACCCACCACCCGCCCCCCGTCCTC
TTCATCTTCATCTTCATCTTCACGCCCTGCTTGGTTGCTGGGTCTTGTTG
GGTGCGATGCGTGCACCATTTGGTTATTTTGCTTCGTCCAGGAAGATGGA
TGAGTTGAAGCTATTCGTGGGCGAGGTGCCAGTAACGCTGCGGTACAGTC
AGTCCCTCAATGACGAAGCTTTTCTCGGTGGCCTTTTTTCCGCTGCTTCC
ATGTCATCGAAGAACTGGGTCAGGTATGGCCATCGCGCCTTCGTGTGTAG
AGAGAGGGGGGGGTGGCAGTGTGATGACCCACCACCCGCCCCCCGTCCTC
TTCATCTTCATCTTCATCTTCACGCCCTGCTTGGTTGCTGGGTCTTGTTG
GGTGCGATGCGTGCACCATTTGGTTATTTTGCTTCGTCCAGGAAGATGGA
TGAGTTGAAGCTATTCGTGGGCGAGGTGCCAGTAACGCTGCGGTACAGTC
AGTCCCTCAATGACGAAGCTTTTCTCGGTGGCCTTTTTTCCGCTGCTTCC
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