mRNA_F-serratus_M_contig115.1260.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig115.1260.1
Unique NamemRNA_F-serratus_M_contig115.1260.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig115.1260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig115contigF-serratus_M_contig115:551720..552292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size573
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929048.1808395-CDS-F-serratus_M_contig115:551719..5521061622929048.1808395-CDS-F-serratus_M_contig115:551719..552106Fucus serratus maleCDSF-serratus_M_contig115 551720..552106 +
1690962681.5222518-CDS-F-serratus_M_contig115:551719..5521061690962681.5222518-CDS-F-serratus_M_contig115:551719..552106Fucus serratus maleCDSF-serratus_M_contig115 551720..552106 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929048.2051835-UTR-F-serratus_M_contig115:552106..5522921622929048.2051835-UTR-F-serratus_M_contig115:552106..552292Fucus serratus maleUTRF-serratus_M_contig115 552107..552292 +
1690962681.531866-UTR-F-serratus_M_contig115:552106..5522921690962681.531866-UTR-F-serratus_M_contig115:552106..552292Fucus serratus maleUTRF-serratus_M_contig115 552107..552292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig115.1260.1prot_F-serratus_M_contig115.1260.1Fucus serratus malepolypeptideF-serratus_M_contig115 551720..552106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig115.1260.1

>prot_F-serratus_M_contig115.1260.1 ID=prot_F-serratus_M_contig115.1260.1|Name=mRNA_F-serratus_M_contig115.1260.1|organism=Fucus serratus male|type=polypeptide|length=129bp
PRLFCTRRHNIYYLCNNSTAISGFSGFPFQSAQLRNPLGASPINAALSIK
RLKLPTVTPQVRPQPCSPVPLFHLSLPLPFFGRLNTLNTLYTLNTHAAIN
LQPPSHPNACCNKPQGPGRRYFKSPRCP*
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mRNA from alignment at F-serratus_M_contig115:551720..552292+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig115.1260.1 ID=mRNA_F-serratus_M_contig115.1260.1|Name=mRNA_F-serratus_M_contig115.1260.1|organism=Fucus serratus male|type=mRNA|length=573bp|location=Sequence derived from alignment at F-serratus_M_contig115:551720..552292+ (Fucus serratus male)
CCTCGCCTTTTTTGCACACGAAGGCACAACATCTACTATCTGTGTAACAA
CAGCACCGCCATCTCAGGGTTTTCAGGCTTCCCTTTCCAGTCGGCGCAGC
TTCGGAATCCTCTTGGGGCAAGTCCAATCAACGCGGCTCTCTCTATAAAA
CGTCTCAAGCTTCCTACGGTCACTCCGCAGGTGCGACCTCAACCTTGTTC
CCCTGTTCCCCTGTTCCACCTCTCTCTTCCTCTGCCGTTTTTTGGACGCC
TTAACACCCTTAACACCCTTTACACCCTTAACACCCATGCGGCCATAAAC
CTGCAACCTCCTTCTCATCCTAATGCATGTTGTAACAAGCCCCAAGGTCC
AGGGCGGCGGTACTTTAAGTCCCCGCGATGCCCGTGACCCGACAATCCTC
TGCCACACAGTCGTTTCAATTCCTTCCCCTGGGCCCCCTGCCGACTTTGT
CCCGCGTTCTCCGTCTCGATCCTCCAGCTCTCCTGATGTGATGCTCCAAA
ATAATAATTGTATCAAGTCTTAAGACTTACCAATAGACCGCGGAGTATTT
ATTATCTTTCAGGATCGTGCAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig115:551720..552292+

>mRNA_F-serratus_M_contig115.1260.1 ID=mRNA_F-serratus_M_contig115.1260.1|Name=mRNA_F-serratus_M_contig115.1260.1|organism=Fucus serratus male|type=CDS|length=774bp|location=Sequence derived from alignment at F-serratus_M_contig115:551720..552292+ (Fucus serratus male)
CCTCGCCTTTTTTGCACACGAAGGCACAACATCTACTATCTGTGTAACAA
CAGCACCGCCATCTCAGGGTTTTCAGGCTTCCCTTTCCAGTCGGCGCAGC
TTCGGAATCCTCTTGGGGCAAGTCCAATCAACGCGGCTCTCTCTATAAAA
CGTCTCAAGCTTCCTACGGTCACTCCGCAGGTGCGACCTCAACCTTGTTC
CCCTGTTCCCCTGTTCCACCTCTCTCTTCCTCTGCCGTTTTTTGGACGCC
TTAACACCCTTAACACCCTTTACACCCTTAACACCCATGCGGCCATAAAC
CTGCAACCTCCTTCTCATCCTAATGCATGTTGTAACAAGCCCCAAGGTCC
AGGGCGGCGGTACTTTAAGTCCCCGCGATGCCCGTGACCTCGCCTTTTTT
GCACACGAAGGCACAACATCTACTATCTGTGTAACAACAGCACCGCCATC
TCAGGGTTTTCAGGCTTCCCTTTCCAGTCGGCGCAGCTTCGGAATCCTCT
TGGGGCAAGTCCAATCAACGCGGCTCTCTCTATAAAACGTCTCAAGCTTC
CTACGGTCACTCCGCAGGTGCGACCTCAACCTTGTTCCCCTGTTCCCCTG
TTCCACCTCTCTCTTCCTCTGCCGTTTTTTGGACGCCTTAACACCCTTAA
CACCCTTTACACCCTTAACACCCATGCGGCCATAAACCTGCAACCTCCTT
CTCATCCTAATGCATGTTGTAACAAGCCCCAAGGTCCAGGGCGGCGGTAC
TTTAAGTCCCCGCGATGCCCGTGA
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