mRNA_F-serratus_M_contig115.1258.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig115.1258.1
Unique NamemRNA_F-serratus_M_contig115.1258.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 9.540e-53
Identity = 79/110 (71.82%), Postives = 90/110 (81.82%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
            GGDCDELRIQSTG  D++EVRGHGGS+YF +T+VTSWD   K PQ  YE GRSF+NCVSE      CDG ++ND GECRMDIINSEMGY+G+ D+ESYGLTWKVRGFC D
Sbjct:   41 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKD 150          
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.180e-52
Identity = 82/111 (73.87%), Postives = 91/111 (81.98%), Query Frame = 1
Query:    1 LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
            +GGDCDELRIQSTG TD+HEVR HGGS+YFE+TIVTSWD   K+PQ  Y  GRSF+NCVSE      C G +QN+ GECRMDIINSE+GYLGY DSESYGLTWKVRGFC D
Sbjct:  149 IGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKD 259          
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 2.240e-51
Identity = 81/118 (68.64%), Postives = 92/118 (77.97%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWK--------VRGFCTD 333
            GGDC++LRIQSTGS D+HEVRGHGGSLYFE+TIVTSWD   K PQ  YE GRSF+NCVSE     DC+G ++N+ GECRMDIINSE+ YLGY DSESYG+TWK        VRGFC D
Sbjct:   62 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKD 179          
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 2.790e-51
Identity = 81/110 (73.64%), Postives = 93/110 (84.55%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
            GGDC++LRIQSTGS D+HEVRGHGGSLYFE+TIVTSWD   K PQ  YE+GRSF+NCVSE     DC+G ++N+ GECRMDIINSE+ YLGY DSESYG+TWKVRGFC D
Sbjct:  513 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKD 622          
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.270e-50
Identity = 81/119 (68.07%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVR---------GFCTD 333
            GGDCDELRIQSTG  D++EVRGHGGS+YF +T+VTSWD   K PQ  YE GRSF+NCVSE      CDGM++ND GECRMDIINSEMGY+G+ DSESYGLTWKVR         GFC D
Sbjct:   86 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKD 204          
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: D7FZV0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV0_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 4.350e-46
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    1 LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
            +GG+C ELRI+ST  +D+ E+RGHGG+LYFE+TIVTSWD D + PQ  Y+ GRSFI CVSE     D   +  N+ GECRMDII+SEMGYLGY  SE+YG+TWKVRGFC+D
Sbjct:    3 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKGGRSFIRCVSEVLTGEDTCAI--NNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 111          
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 2.130e-43
Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 1
Query:    1 LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
            +GG+C ELRI+ST  +D+ E+RGHGG+LYFE+TIVTSWD D + PQ  Y+DGRSFI CVSE     D   +  N+ GECRMDII+SEMGYLGY  SE+YG+TWKVRGFC+D
Sbjct:   74 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTCAI--NNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 182          
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 7.850e-37
Identity = 69/112 (61.61%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
            GGD   LRIQSTGS DY+E+RGHGGSL F +T VTSWD D K   T+Y+  RSFI CVSE  A     CDG + N  GECRMDII SEMG +GY  +ESYG++WKVRG+C++
Sbjct:  466 GGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSE 577          
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.310e-35
Identity = 66/112 (58.93%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
            GGD DELR+ ST  T +  +R HGGSL F +T V SWD  T SP  D  DGRS+I+ +SE     D  C+G ++N  GE RMDI +SE+GYLGY DSESYGLTWKVRGFC D
Sbjct:   19 GGDADELRLLSTSET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCED 129          
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 4.120e-35
Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
            GGD DELR+ ST  T Y  +R HGGSL F  T V SWD  T SP  D  DGRS+I+ +SE     D  C+G ++N  GE RMDI NSE+GYLG+ DSESYGLTWKVRGFC D
Sbjct:  128 GGDADELRLLSTTDT-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKD 238          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIU4_ECTSI9.540e-5371.82Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LRM4_ECTSI1.180e-5273.87Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5KWQ2_9PHAE2.240e-5168.64MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LC73_ECTSI2.790e-5173.64Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5JGU8_9PHAE1.270e-5068.07MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FZV0_ECTSI4.350e-4663.96Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI2.130e-4364.86Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF5_9PHAE7.850e-3761.61MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5KES9_9PHAE2.310e-3558.93MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
A0A6H5JU98_9PHAE4.120e-3559.82MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig115contigF-serratus_M_contig115:227943..228275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.7
Seed ortholog evalue1.2e-44
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929048.7425299-CDS-F-serratus_M_contig115:227942..2282751622929048.7425299-CDS-F-serratus_M_contig115:227942..228275Fucus serratus maleCDSF-serratus_M_contig115 227943..228275 -
1690962681.7596095-CDS-F-serratus_M_contig115:227942..2282751690962681.7596095-CDS-F-serratus_M_contig115:227942..228275Fucus serratus maleCDSF-serratus_M_contig115 227943..228275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig115.1258.1prot_F-serratus_M_contig115.1258.1Fucus serratus malepolypeptideF-serratus_M_contig115 227943..228275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig115.1258.1

>prot_F-serratus_M_contig115.1258.1 ID=prot_F-serratus_M_contig115.1258.1|Name=mRNA_F-serratus_M_contig115.1258.1|organism=Fucus serratus male|type=polypeptide|length=111bp
LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYE
DGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYG
LTWKVRGFCTD
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mRNA from alignment at F-serratus_M_contig115:227943..228275-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig115.1258.1 ID=mRNA_F-serratus_M_contig115.1258.1|Name=mRNA_F-serratus_M_contig115.1258.1|organism=Fucus serratus male|type=mRNA|length=333bp|location=Sequence derived from alignment at F-serratus_M_contig115:227943..228275- (Fucus serratus male)
CTTGGAGGTGACTGCGACGAGCTTCGCATCCAGTCGACGGGATCCACAGA CTACCACGAGGTTAGGGGTCACGGAGGAAGCCTGTACTTTGAAAACACCA TCGTGACTTCGTGGGACCCAGACACAAAGTCTCCGCAGACGGATTATGAG GACGGGCGCTCGTTCATTAACTGTGTCTCCGAGTACAATGCCACGGTGGA CTGTGATGGTATGTCCCAGAACGACTTTGGGGAATGCCGCATGGACATCA TCAACTCTGAGATGGGGTACCTGGGCTACATGGACTCGGAGTCGTATGGG TTAACCTGGAAAGTCCGCGGTTTCTGCACCGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig115:227943..228275-

>mRNA_F-serratus_M_contig115.1258.1 ID=mRNA_F-serratus_M_contig115.1258.1|Name=mRNA_F-serratus_M_contig115.1258.1|organism=Fucus serratus male|type=CDS|length=666bp|location=Sequence derived from alignment at F-serratus_M_contig115:227943..228275- (Fucus serratus male)
CTTGGAGGTGACTGCGACGAGCTTCGCATCCAGTCGACGGGATCCACAGA
CTACCACGAGGTTAGGGGTCACGGAGGAAGCCTGTACTTTGAAAACACCA
TCGTGACTTCGTGGGACCCAGACACAAAGTCTCCGCAGACGGATTATGAG
GACGGGCGCTCGTTCATTAACTGTGTCTCCGAGTACAATGCCACGGTGGA
CTGTGATGGTATGTCCCAGAACGACTTTGGGGAATGCCGCATGGACATCA
TCAACTCTGAGATGGGGTACCTGGGCTACATGGACTCGGAGTCGTATGGG
TTAACCTGGAAAGTCCGCGGTTTCTGCACCGACCTTGGAGGTGACTGCGA
CGAGCTTCGCATCCAGTCGACGGGATCCACAGACTACCACGAGGTTAGGG
GTCACGGAGGAAGCCTGTACTTTGAAAACACCATCGTGACTTCGTGGGAC
CCAGACACAAAGTCTCCGCAGACGGATTATGAGGACGGGCGCTCGTTCAT
TAACTGTGTCTCCGAGTACAATGCCACGGTGGACTGTGATGGTATGTCCC
AGAACGACTTTGGGGAATGCCGCATGGACATCATCAACTCTGAGATGGGG
TACCTGGGCTACATGGACTCGGAGTCGTATGGGTTAACCTGGAAAGTCCG
CGGTTTCTGCACCGAC
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