mRNA_F-serratus_M_contig115.1258.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 178 bits (451), Expect = 9.540e-53 Identity = 79/110 (71.82%), Postives = 90/110 (81.82%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
GGDCDELRIQSTG D++EVRGHGGS+YF +T+VTSWD K PQ YE GRSF+NCVSE CDG ++ND GECRMDIINSEMGY+G+ D+ESYGLTWKVRGFC D
Sbjct: 41 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKD 150
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 181 bits (460), Expect = 1.180e-52 Identity = 82/111 (73.87%), Postives = 91/111 (81.98%), Query Frame = 1
Query: 1 LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
+GGDCDELRIQSTG TD+HEVR HGGS+YFE+TIVTSWD K+PQ Y GRSF+NCVSE C G +QN+ GECRMDIINSE+GYLGY DSESYGLTWKVRGFC D
Sbjct: 149 IGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKD 259
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE) HSP 1 Score: 174 bits (441), Expect = 2.240e-51 Identity = 81/118 (68.64%), Postives = 92/118 (77.97%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWK--------VRGFCTD 333
GGDC++LRIQSTGS D+HEVRGHGGSLYFE+TIVTSWD K PQ YE GRSF+NCVSE DC+G ++N+ GECRMDIINSE+ YLGY DSESYG+TWK VRGFC D
Sbjct: 62 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKD 179
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 182 bits (462), Expect = 2.790e-51 Identity = 81/110 (73.64%), Postives = 93/110 (84.55%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
GGDC++LRIQSTGS D+HEVRGHGGSLYFE+TIVTSWD K PQ YE+GRSF+NCVSE DC+G ++N+ GECRMDIINSE+ YLGY DSESYG+TWKVRGFC D
Sbjct: 513 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKD 622
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 175 bits (443), Expect = 1.270e-50 Identity = 81/119 (68.07%), Postives = 91/119 (76.47%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVR---------GFCTD 333
GGDCDELRIQSTG D++EVRGHGGS+YF +T+VTSWD K PQ YE GRSF+NCVSE CDGM++ND GECRMDIINSEMGY+G+ DSESYGLTWKVR GFC D
Sbjct: 86 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKD 204
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: D7FZV0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV0_ECTSI) HSP 1 Score: 153 bits (386), Expect = 4.350e-46 Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 1
Query: 1 LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
+GG+C ELRI+ST +D+ E+RGHGG+LYFE+TIVTSWD D + PQ Y+ GRSFI CVSE D + N+ GECRMDII+SEMGYLGY SE+YG+TWKVRGFC+D
Sbjct: 3 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKGGRSFIRCVSEVLTGEDTCAI--NNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 111
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 155 bits (393), Expect = 2.130e-43 Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 1
Query: 1 LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
+GG+C ELRI+ST +D+ E+RGHGG+LYFE+TIVTSWD D + PQ Y+DGRSFI CVSE D + N+ GECRMDII+SEMGYLGY SE+YG+TWKVRGFC+D
Sbjct: 74 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTCAI--NNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 182
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 141 bits (356), Expect = 7.850e-37 Identity = 69/112 (61.61%), Postives = 82/112 (73.21%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
GGD LRIQSTGS DY+E+RGHGGSL F +T VTSWD D K T+Y+ RSFI CVSE A CDG + N GECRMDII SEMG +GY +ESYG++WKVRG+C++
Sbjct: 466 GGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSE 577
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE) HSP 1 Score: 130 bits (328), Expect = 2.310e-35 Identity = 66/112 (58.93%), Postives = 78/112 (69.64%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
GGD DELR+ ST T + +R HGGSL F +T V SWD T SP D DGRS+I+ +SE D C+G ++N GE RMDI +SE+GYLGY DSESYGLTWKVRGFC D
Sbjct: 19 GGDADELRLLSTSET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCED 129
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 132 bits (331), Expect = 4.120e-35 Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CDGMSQNDFGECRMDIINSEMGYLGYMDSESYGLTWKVRGFCTD 333
GGD DELR+ ST T Y +R HGGSL F T V SWD T SP D DGRS+I+ +SE D C+G ++N GE RMDI NSE+GYLG+ DSESYGLTWKVRGFC D
Sbjct: 128 GGDADELRLLSTTDT-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKD 238 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig115.1258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig115.1258.1 >prot_F-serratus_M_contig115.1258.1 ID=prot_F-serratus_M_contig115.1258.1|Name=mRNA_F-serratus_M_contig115.1258.1|organism=Fucus serratus male|type=polypeptide|length=111bp LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEback to top mRNA from alignment at F-serratus_M_contig115:227943..228275- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig115.1258.1 ID=mRNA_F-serratus_M_contig115.1258.1|Name=mRNA_F-serratus_M_contig115.1258.1|organism=Fucus serratus male|type=mRNA|length=333bp|location=Sequence derived from alignment at F-serratus_M_contig115:227943..228275- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig115:227943..228275- >mRNA_F-serratus_M_contig115.1258.1 ID=mRNA_F-serratus_M_contig115.1258.1|Name=mRNA_F-serratus_M_contig115.1258.1|organism=Fucus serratus male|type=CDS|length=666bp|location=Sequence derived from alignment at F-serratus_M_contig115:227943..228275- (Fucus serratus male)back to top |