mRNA_F-serratus_M_contig1146.1249.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1146.1249.1
Unique NamemRNA_F-serratus_M_contig1146.1249.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A392MNS0_9FABA (Copia-type polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MNS0_9FABA)

HSP 1 Score: 52.0 bits (123), Expect = 3.120e-6
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 1
Query:   10 CAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPASLGGSRYFVTFVDSTSR 177
            C  C + K+ R   A H   RA+  +++V  D  GPF  SLGG+RYFV+FVD  SR
Sbjct:   15 CRNCLVDKQARKSFADHIAVRARDKLDIVHSDVCGPFTESLGGNRYFVSFVDEFSR 70          
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: UPI001D001203 (uncharacterized protein LOC26513718 n=1 Tax=Drosophila ananassae TaxID=7217 RepID=UPI001D001203)

HSP 1 Score: 51.6 bits (122), Expect = 4.350e-6
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    4 VSCAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPA-SLGGSRYFVTFVDSTSR 177
            +SC  C ++K    P    T+ RAK  ++LV  D  GPFP  SLGGS+YF+TF+D  SR
Sbjct:  427 ISCKTCMVSKIHVQPFPSATSNRAKEILDLVHADVCGPFPTLSLGGSKYFLTFIDDKSR 485          
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A2K3JX10_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JX10_TRIPR)

HSP 1 Score: 48.9 bits (115), Expect = 1.450e-5
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 1
Query:   10 CAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPASLGGSRYFVTFVDSTS 174
            C  C + K+ R   A H   RA+  +++V  D  GPF  SLGG+RY+V+FVD  S
Sbjct:   15 CRNCLVDKQARKSFADHIAVRARGKLDIVHSDVCGPFTESLGGNRYYVSFVDEFS 69          
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A6H5JFN2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN2_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 1.890e-5
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 1
Query:    1 LVSCAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPASLGGSRYFVTFVDSTSR 177
            L  C  C  AK  +A   H ++ RA+RP  L  +D  GP  ASLGGS + +TFV+S SR
Sbjct:   49 LQPCGGCLQAKGKKAGVPHQSSTRAERPHMLWHIDLCGPMTASLGGSFFMITFVESFSR 107          
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A151RAL0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RAL0_CAJCA)

HSP 1 Score: 49.3 bits (116), Expect = 2.820e-5
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 1
Query:    7 SCAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPA-SLGGSRYFVTFVDSTSR 177
            +C +C + K+ R P   H   R+K  +E++  D  GPF   SLGG+RYF+TF+D  S+
Sbjct:  283 TCESCMLGKQARNPFKVHLETRSKDVLEVIYTDVCGPFEVPSLGGNRYFITFIDDFSK 340          
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A151RW17_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RW17_CAJCA)

HSP 1 Score: 49.3 bits (116), Expect = 2.850e-5
Identity = 23/59 (38.98%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    4 VSCAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFP-ASLGGSRYFVTFVDSTSR 177
            ++C +C + K+ R P   H   R+K  +E++  D  GPF  +SLGG++YF+TF+D  S+
Sbjct:  481 MTCESCMLGKQARNPFKAHLKTRSKDVLEVIYTDVCGPFEVSSLGGNKYFITFIDDFSK 539          
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: Q9ZRJ0_TOBAC (Retrotransposon Tto1 DNA n=2 Tax=Nicotiana tabacum TaxID=4097 RepID=Q9ZRJ0_TOBAC)

HSP 1 Score: 49.3 bits (116), Expect = 2.860e-5
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 1
Query:    1 LVSCAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPASLGGSRYFVTFVDSTSR 177
            L  CA C   K+ R        +R +  ++LV  D  GPF  SLGG+RYFVTF+D  SR
Sbjct:  452 LKKCADCLAGKQNRVSFKRFPPSRRQNVLDLVHSDVCGPFKKSLGGARYFVTFIDDHSR 510          
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A5N6P6F3_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P6F3_9ASTR)

HSP 1 Score: 49.3 bits (116), Expect = 2.860e-5
Identity = 27/57 (47.37%), Postives = 33/57 (57.89%), Query Frame = 1
Query:   10 CAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPF-PASLGGSRYFVTFVDSTSR 177
            C +C + K  R P    T  RA  P+EL+  D  GP  P +LGGSRYF+ FVD  SR
Sbjct:  659 CDSCLLGKHNRKPFPGKTNYRASSPLELIHTDLCGPISPPTLGGSRYFMLFVDDHSR 715          
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: UPI001C8A75FC (uncharacterized protein LOC108096036 isoform X1 n=1 Tax=Drosophila ficusphila TaxID=30025 RepID=UPI001C8A75FC)

HSP 1 Score: 48.1 bits (113), Expect = 7.330e-5
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    4 VSCAACSMAK--EIRAPTAHHTTARAKRPMELVRMDTTGPFPA-SLGGSRYFVTFVDSTSR 177
            ++C  C ++K    R PT+  T+ RAK  +EL+  D  GPFP  SLGGS+YF+TF+D  SR
Sbjct:  428 MNCKTCMVSKIHVQRFPTS--TSNRAKELLELIHADVCGPFPTQSLGGSKYFLTFIDDKSR 486          
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID)

HSP 1 Score: 48.1 bits (113), Expect = 7.330e-5
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 1
Query:    7 SCAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPA-SLGGSRYFVTFVDSTSR 177
            +C  C+M K+ R P    +T   K  +EL+  D  GP    S+GGSRYFVTF+D  SR
Sbjct:  440 NCEGCAMGKQHRQPFPKKSTNTTKGLLELIHSDVCGPMDVPSVGGSRYFVTFIDDYSR 497          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A392MNS0_9FABA3.120e-646.43Copia-type polyprotein n=1 Tax=Trifolium medium Ta... [more]
UPI001D0012034.350e-647.46uncharacterized protein LOC26513718 n=1 Tax=Drosop... [more]
A0A2K3JX10_TRIPR1.450e-543.64Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JFN2_9PHAE1.890e-545.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A151RAL0_CAJCA2.820e-541.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RW17_CAJCA2.850e-538.98Retrovirus-related Pol polyprotein from transposon... [more]
Q9ZRJ0_TOBAC2.860e-544.07Retrotransposon Tto1 DNA n=2 Tax=Nicotiana tabacum... [more]
A0A5N6P6F3_9ASTR2.860e-547.37Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
UPI001C8A75FC7.330e-547.54uncharacterized protein LOC108096036 isoform X1 n=... [more]
A0A7M6DPI8_9CNID7.330e-544.83Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1146contigF-serratus_M_contig1146:35767..35943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.6902497-CDS-F-serratus_M_contig1146:35766..359191622929047.6902497-CDS-F-serratus_M_contig1146:35766..35919Fucus serratus maleCDSF-serratus_M_contig1146 35767..35919 -
1690962681.3570313-CDS-F-serratus_M_contig1146:35766..359191690962681.3570313-CDS-F-serratus_M_contig1146:35766..35919Fucus serratus maleCDSF-serratus_M_contig1146 35767..35919 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.7076986-UTR-F-serratus_M_contig1146:35919..359431622929047.7076986-UTR-F-serratus_M_contig1146:35919..35943Fucus serratus maleUTRF-serratus_M_contig1146 35920..35943 -
1690962681.367067-UTR-F-serratus_M_contig1146:35919..359431690962681.367067-UTR-F-serratus_M_contig1146:35919..35943Fucus serratus maleUTRF-serratus_M_contig1146 35920..35943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1146.1249.1prot_F-serratus_M_contig1146.1249.1Fucus serratus malepolypeptideF-serratus_M_contig1146 35767..35919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1146.1249.1

>prot_F-serratus_M_contig1146.1249.1 ID=prot_F-serratus_M_contig1146.1249.1|Name=mRNA_F-serratus_M_contig1146.1249.1|organism=Fucus serratus male|type=polypeptide|length=51bp
MAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPASLGGSRYFVTFVDSTS
R
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mRNA from alignment at F-serratus_M_contig1146:35767..35943-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1146.1249.1 ID=mRNA_F-serratus_M_contig1146.1249.1|Name=mRNA_F-serratus_M_contig1146.1249.1|organism=Fucus serratus male|type=mRNA|length=177bp|location=Sequence derived from alignment at F-serratus_M_contig1146:35767..35943- (Fucus serratus male)
CTGGTTTCGTGTGCAGCATGTTCGATGGCAAAGGAGATCCGGGCGCCAAC TGCCCATCACACGACGGCGCGCGCCAAGAGGCCGATGGAGCTGGTACGCA TGGACACCACGGGCCCTTTTCCGGCATCTCTCGGGGGATCGCGGTACTTC GTTACGTTCGTGGACAGCACTTCCCGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1146:35767..35943-

>mRNA_F-serratus_M_contig1146.1249.1 ID=mRNA_F-serratus_M_contig1146.1249.1|Name=mRNA_F-serratus_M_contig1146.1249.1|organism=Fucus serratus male|type=CDS|length=306bp|location=Sequence derived from alignment at F-serratus_M_contig1146:35767..35943- (Fucus serratus male)
ATGGCAAAGGAGATCCGGGCGCCAACTGCCCATCACACGACGGCGCGCGC
CAAGAGGCCGATGGAGCTGGTACGCATGGACACCACGGGCCCTTTTCCGG
CATCTCTCGGGGGATCGCGGTACTTCGTTACGTTCGTGGACAGCACTTCC
CGTATGGCAAAGGAGATCCGGGCGCCAACTGCCCATCACACGACGGCGCG
CGCCAAGAGGCCGATGGAGCTGGTACGCATGGACACCACGGGCCCTTTTC
CGGCATCTCTCGGGGGATCGCGGTACTTCGTTACGTTCGTGGACAGCACT
TCCCGT
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