mRNA_F-serratus_M_contig1145.1243.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1145.1243.1
Unique NamemRNA_F-serratus_M_contig1145.1243.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1145.1243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1145contigF-serratus_M_contig1145:28899..29756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size173
Cds size111
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1145.1243.1prot_F-serratus_M_contig1145.1243.1Fucus serratus malepolypeptideF-serratus_M_contig1145 28899..29696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929046.4158788-CDS-F-serratus_M_contig1145:28898..289761622929046.4158788-CDS-F-serratus_M_contig1145:28898..28976Fucus serratus maleCDSF-serratus_M_contig1145 28899..28976 -
1690962680.5866308-CDS-F-serratus_M_contig1145:28898..289761690962680.5866308-CDS-F-serratus_M_contig1145:28898..28976Fucus serratus maleCDSF-serratus_M_contig1145 28899..28976 -
1622929046.4307103-CDS-F-serratus_M_contig1145:29663..296961622929046.4307103-CDS-F-serratus_M_contig1145:29663..29696Fucus serratus maleCDSF-serratus_M_contig1145 29664..29696 -
1690962680.599035-CDS-F-serratus_M_contig1145:29663..296961690962680.599035-CDS-F-serratus_M_contig1145:29663..29696Fucus serratus maleCDSF-serratus_M_contig1145 29664..29696 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929046.445127-UTR-F-serratus_M_contig1145:29696..297561622929046.445127-UTR-F-serratus_M_contig1145:29696..29756Fucus serratus maleUTRF-serratus_M_contig1145 29697..29756 -
1690962680.6116784-UTR-F-serratus_M_contig1145:29696..297561690962680.6116784-UTR-F-serratus_M_contig1145:29696..29756Fucus serratus maleUTRF-serratus_M_contig1145 29697..29756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1145.1243.1

>prot_F-serratus_M_contig1145.1243.1 ID=prot_F-serratus_M_contig1145.1243.1|Name=mRNA_F-serratus_M_contig1145.1243.1|organism=Fucus serratus male|type=polypeptide|length=37bp
MVVQSSTTPPMRWVWGFQKILGRLQLLRGSQCAAFNP
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mRNA from alignment at F-serratus_M_contig1145:28899..29756-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1145.1243.1 ID=mRNA_F-serratus_M_contig1145.1243.1|Name=mRNA_F-serratus_M_contig1145.1243.1|organism=Fucus serratus male|type=mRNA|length=858bp|location=Sequence derived from alignment at F-serratus_M_contig1145:28899..29756- (Fucus serratus male)
AACGCGGTACTGTAGAACGCGTCAACATAAACAAGCTGTTTGTGCTGTGT
GGCGGTGACCATGGTAGTACAGTCCAGTACAACCCCCCCCATGGTCTTCG
ATATAACAGCGCAAATAAGCTTACGAACTATTCCTTGAAACAGTACATCA
ATCGAGGATTTAATACAGTACTGGTATTGTATCAATCGTTTACAATTGAT
CAGTACCATGTATGGTCACACATATAGCAAGAGTATGGATCAACCTGGTA
AGGTTGCCAATCCTGCTTGTGGTCAGCTGAACAAGGAAAAAGAATATTCC
CCTGTCCGCGTTCGCGCCTGAGAATTTGGTCTCGCGAGACGGTTTCGGCA
GTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGT
GCTTACTTACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATATATTTA
TATTAAACCGCCATACGCCATCGGGTAAGTCCCAAGTTTATCGGGTCACG
CAATATTGCGTACCGATGGCGTTCACTGCCGAGAGTCCGTCGGCACAGGG
CCAGTAAATCTCAAGGTAGTTCCGAACGACTGCTGCCTTAGCAAGTCACT
ATGGACCAATTAATATACGCCTCTCTTTCCCACACCCACTATTGGTATGA
AGTGGGCATGTTGAAAGTAACGGCGAAGTAACGGGATAAGGACAAAACAA
ATTAAAAATTTGACGACAGCGGTAATCGAACCCTGGACAGAGATTAACTA
TGCGAAATATTCCGGTCCATCCATGAGCAGAGGTGGGTTTGGGGATTTCA
GAAAATTCTTGGAAGATTACAGTTGCTCCGGGGTAGTCAGTGCGCTGCAT
TCAATCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1145:28899..29756-

>mRNA_F-serratus_M_contig1145.1243.1 ID=mRNA_F-serratus_M_contig1145.1243.1|Name=mRNA_F-serratus_M_contig1145.1243.1|organism=Fucus serratus male|type=CDS|length=222bp|location=Sequence derived from alignment at F-serratus_M_contig1145:28899..29756- (Fucus serratus male)
ATGGTAGTACAGTCCAGTACAACCCCCCCCATGATGGTAGTACAGTCCAG
TACAACCCCCCCCATGAGGTGGGTTTGGGGATTTCAGAAAATTCTTGGAA
GATTACAGTTGCTCCGGGGTAGTCAGTGCGCTGCATTCAATCCGAGGTGG
GTTTGGGGATTTCAGAAAATTCTTGGAAGATTACAGTTGCTCCGGGGTAG
TCAGTGCGCTGCATTCAATCCG
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