mRNA_F-serratus_M_contig1142.1232.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1142.1232.1
Unique NamemRNA_F-serratus_M_contig1142.1232.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.910e-18
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 1
Query:    1 DSGSPWGRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTLL 264
            D  + WGRALYALSAPL+FSRLLF+AQ L F G M++V+FSM   +++FGVV+++VM GFA+S F  L  D + TF  T L LFK +L
Sbjct:  892 DGDNSWGRALYALSAPLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMS-FHALFGDVD-TFGGTCLTLFKAML 977          
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 5.200e-16
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    1 DSGSPWGRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTLL 264
            D  S WG A YALSAPLV +R+LF+AQ L FQG MV+VIF M   +LQFG V+++VM GF ++L  + R+  +F   +TLL LFK +L
Sbjct:  830 DWTSTWGPAFYALSAPLVVARVLFFAQILQFQGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVIFRDVEDF--GDTLLGLFKAML 915          
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.480e-15
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    1 DSGSPWGRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTLL 264
            D  S WG A YALSAPLV +R+LF+AQ L F G MV+VIF M   +LQFG V+++VM GF ++L    R+  +F   +TLL LFK +L
Sbjct:  847 DWTSTWGPAFYALSAPLVVARVLFFAQILQFHGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVFFRDVADF--GDTLLGLFKAML 932          
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: A0A6H5JMG8_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG8_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.560e-14
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 DSGSPWGRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTLL 264
            DS S WGR LYA+ +PL++ RLL+YAQ +P QGS ++V++SMA  + QF VV+ +V+ GFA+S F+L R+    T    LL  F+ +L
Sbjct:  744 DSDSSWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYSMASELGQFFVVMGVVILGFAMSFFALFRDVKGETLRGALLDAFQAML 831          
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: D7FR83_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR83_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.250e-12
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 DSGSPWGRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTLL 264
            D  S WGR LYA+ +PL++ RLL+YAQ +P QGS ++V++ MA  + QF VV+ +V+ GFA+S F+L R+    T    LL  F+ +L
Sbjct:  653 DPDSSWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYGMASELGQFFVVMGVVILGFAMSFFALFRDVKGETIRGALLDAFQAML 740          
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.530e-11
Identity = 34/63 (53.97%), Postives = 50/63 (79.37%), Query Frame = 1
Query:   22 RALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRN 210
            RALYALSAPL F+R+LF+AQ LP QG M++V+FSM  ++ +FG+++++VM GF  S +SL + 
Sbjct: 1217 RALYALSAPLAFARILFFAQILPSQGPMIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKE 1279          
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 9.910e-11
Identity = 32/67 (47.76%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   22 RALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNF 222
            RALYALSAPL F+R+LF+ Q LP QG +++V+FSM  ++ +FG+++++VM GF  S +SL +    +
Sbjct:  972 RALYALSAPLAFARILFFVQILPSQGPIIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTTY 1038          
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.980e-8
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   19 GRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTL 261
            G A YALSAPL+ SR LF+ Q  P QG MV  IF M  V+L+FG V+ +VM GF ++   L R+  +F   E+ L LFK +
Sbjct:  659 GPAFYALSAPLLVSRALFFVQIHPLQGPMV--IFRMTTVLLKFGFVMAVVMIGFTMAFHVLFRDFDSF--GESFLELFKAM 735          
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.400e-7
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   19 GRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNF 222
            GRAL+ALSAPLVFSR+LF+ QFL  QG +++++  +   +LQF +VL  +M GF +S ++L     ++
Sbjct:  583 GRALFALSAPLVFSRVLFFGQFLKRQGLVIQMMTILFGEMLQFALVLGTIMMGFTVSFYALFEEAKSY 650          
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.170e-7
Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    1 DSGSPWGRALYALSAPLVFSRLLFYAQFLPFQGSMVE-----------VIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTLL 264
            D  S  G A YAL+APL+ SR LF+ Q  P QG M++           V+F M  ++L+FG V+ +++ GF ++   L R+  +F   E+ L LFK +L
Sbjct:  832 DWKSQLGPAFYALAAPLLVSRALFFVQIHPLQGPMIQASGETKRFPQRVVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRDFDSF--GESFLDLFKAML 928          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FLB1_ECTSI1.910e-1856.82Ankyrin Repeat Transient Receptor Potential Channe... [more]
D7FZR6_ECTSI5.200e-1653.41Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5KBU4_9PHAE2.480e-1552.27Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JMG8_9PHAE7.560e-1447.73Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FR83_ECTSI1.250e-1245.45Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
A0A6H5LDE6_9PHAE1.530e-1153.97Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LT30_ECTSI9.910e-1147.76Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JG42_9PHAE1.980e-848.15Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FMG5_ECTSI2.400e-745.59Transient receptor potential channel n=1 Tax=Ectoc... [more]
A0A6H5KJG3_9PHAE6.170e-737.37Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1142contigF-serratus_M_contig1142:255119..256545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue7.2e-16
Seed eggNOG ortholog2880.D7FLB1
KEGG koko:K04981
KEGG TC1.A.4.5.8
KEGG Pathwayko04978,map04978
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.ion channel activity
EggNOG OGsKOG3614@1,KOG3614@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04040
Exons2
Model size268
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929045.1241994-CDS-F-serratus_M_contig1142:255118..2552291622929045.1241994-CDS-F-serratus_M_contig1142:255118..255229Fucus serratus maleCDSF-serratus_M_contig1142 255119..255229 +
1690962679.8749895-CDS-F-serratus_M_contig1142:255118..2552291690962679.8749895-CDS-F-serratus_M_contig1142:255118..255229Fucus serratus maleCDSF-serratus_M_contig1142 255119..255229 +
1622929045.1440814-CDS-F-serratus_M_contig1142:256390..2565431622929045.1440814-CDS-F-serratus_M_contig1142:256390..256543Fucus serratus maleCDSF-serratus_M_contig1142 256391..256543 +
1690962679.8861232-CDS-F-serratus_M_contig1142:256390..2565431690962679.8861232-CDS-F-serratus_M_contig1142:256390..256543Fucus serratus maleCDSF-serratus_M_contig1142 256391..256543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1142.1232.1prot_F-serratus_M_contig1142.1232.1Fucus serratus malepolypeptideF-serratus_M_contig1142 255119..256543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1142.1232.1

>prot_F-serratus_M_contig1142.1232.1 ID=prot_F-serratus_M_contig1142.1232.1|Name=mRNA_F-serratus_M_contig1142.1232.1|organism=Fucus serratus male|type=polypeptide|length=88bp
DSGSPWGRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFG
VVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTLL
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mRNA from alignment at F-serratus_M_contig1142:255119..256545+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1142.1232.1 ID=mRNA_F-serratus_M_contig1142.1232.1|Name=mRNA_F-serratus_M_contig1142.1232.1|organism=Fucus serratus male|type=mRNA|length=1427bp|location=Sequence derived from alignment at F-serratus_M_contig1142:255119..256545+ (Fucus serratus male)
GACAGCGGCAGTCCATGGGGGCGAGCTCTGTATGCCCTGAGTGCGCCGCT GGTTTTTTCACGCCTCCTATTCTATGCGCAATTCCTGCCATTTCAGGGGT CTATGGTGGAGGTGAGCGTTAAGTATCCACCAAACGCCAGTCGTAGTTTT CTATATATATACAATTCATAAGAGTCTTCCGCGATTAACTTAATGTTGTA CACAGTAATAATACGGTGCGAGATTCAATGTTTCACGCCTTGCTAAGACT ATCTTATATGAGGGGACCGGAAATCAGCGATTTATAAATTTGGACATATG TGTCAAATTCCGGAGAGTGACCAGTCTATTACGTGACTGAACCCATGACC ATTTTATGCGCCTGGAAATAAGAAATCGTCGGTGTACGAAACCATGGAAG GCGAGGATTGTTTTCCTTTATTCGAGACCACACGCCAGGAAGAAGGGTAA TACTCCTTACTAATAGTGTACACCAGCATCTCGCCAGTTGTGCATATCAA GCAGACCTTGGTGTTATGAGATTCAAAATTGCAGCGAAATGTACCAGCCA GTAGTCATGTTTTTATTTGTGATATATTAATAGCACACTTTTAGTTTTAT ACGTTATAAAGTACGAGTACTTTAGTTAGTTGAGTAATGGTATCACCCTA TGCACGTTTCTGGCGTTCCAAATACTCCATACGGCAGTCTTTGAAGTCTA AAAACTGGAAATACAGATTATCTCCATCTTCGATGATCGTGATCCATCGT TTCTAAGTGACGATTTTCAACTAGTCTTTCCATCAACGTCACCAAAGACG GGATGCGAAAGCGTCACAGAAACGATTTGGCTACACTAAAAGGGGAATCG TCAATCTTATCGTGGATCTTCGAGGAACACGGTAACTCAAACGCACTGGC TCACATGTTTCTTGTCAGATTTCGGTGTACGCCGGGAAACTTCTCGGGAG TAGTTCAGTAAAAAACTCCCTCTTGTTCGACGAAGCAGCTGCTACGCCAC TCCGCTTTTGTTTGTGCCATAGCAAAGCGACATCATTGTATCATTGTTGT GTCTCTGAACAGTAGCCACCGTCGTCCTGAGTTTCTTTGCGCGAAGCCCC TCTGTGAAACGCCGCCGCAAAAAAGTCACCAGTACTTGACAGGCTAGAAT ATTATGCCCACGGACATAAGTGGCTTGTACGGGCGGTTTAAATGGAATAC TCGATCACGCTTAACTCAAGTTGTGTCTTCTCGTTCTTCCCCGCCACGAA TTCCGTCACTTCACTTCTGCAGGTGATTTTCAGCATGGCGATTGTTGTCC TACAATTCGGAGTTGTTCTGGTCATTGTCATGACGGGATTTGCTCTGTCG CTTTTCTCGCTCTTGCGAAATGACGGCAACTTTACCTTCGACGAGACGCT GCTCCTTCTTTTTAAAACTCTGCTGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1142:255119..256545+

>mRNA_F-serratus_M_contig1142.1232.1 ID=mRNA_F-serratus_M_contig1142.1232.1|Name=mRNA_F-serratus_M_contig1142.1232.1|organism=Fucus serratus male|type=CDS|length=528bp|location=Sequence derived from alignment at F-serratus_M_contig1142:255119..256545+ (Fucus serratus male)
GACAGCGGCAGTCCATGGGGGCGAGCTCTGTATGCCCTGAGTGCGCCGCT
GGTTTTTTCACGCCTCCTATTCTATGCGCAATTCCTGCCATTTCAGGGGT
CTATGGTGGAGGACAGCGGCAGTCCATGGGGGCGAGCTCTGTATGCCCTG
AGTGCGCCGCTGGTTTTTTCACGCCTCCTATTCTATGCGCAATTCCTGCC
ATTTCAGGGGTCTATGGTGGAGGTGATTTTCAGCATGGCGATTGTTGTCC
TACAATTCGGAGTTGTTCTGGTCATTGTCATGACGGGATTTGCTCTGTCG
CTTTTCTCGCTCTTGCGAAATGACGGCAACTTTACCTTCGACGAGACGCT
GCTCCTTCTTTTTAAAACTCTGCTGGTGATTTTCAGCATGGCGATTGTTG
TCCTACAATTCGGAGTTGTTCTGGTCATTGTCATGACGGGATTTGCTCTG
TCGCTTTTCTCGCTCTTGCGAAATGACGGCAACTTTACCTTCGACGAGAC
GCTGCTCCTTCTTTTTAAAACTCTGCTG
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